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trust1/gatk : version0.4.1
Variant Calling Pipeline based on GATK image
Latest release: over 4 years ago - 256 downloads - 965 dependencies
JSONDependencies
- HMM 1.0
- KernSmooth 2.23-15
- MASS 7.3-51.1
- R6 2.3.0
- RColorBrewer 1.1-2
- Rcpp 1.0.0
- assertthat 0.2.0
- base 3.2.5
- bitops 1.0-6
- caTools 1.17.1.1
- cli 1.0.1
- colorspace 1.4-0
- compiler 3.2.5
- crayon 1.3.4
- data.table 1.10.4-2
- datasets 3.2.5
- digest 0.6.18
- fansi 0.4.0
- gdata 2.18.0
- getopt 1.20.0
- ggplot2 2.2.1
- glue 1.3.0
- gplots 3.0.1
- grDevices 3.2.5
- graphics 3.2.5
- grid 3.2.5
- gsalib 2.1
- gtable 0.2.0
- gtools 3.8.1
- labeling 0.3
- lazyeval 0.2.1
- magrittr 1.5
- methods 3.2.5
- munsell 0.5.0
- optparse 1.3.2
- parallel 3.2.5
- pillar 1.3.1
- pkgconfig 2.0.2
- plyr 1.8.4
- reshape2 1.4.3
- rlang 0.3.1
- scales 1.0.0
- splines 3.2.5
- stats4 3.2.5
- stats 3.2.5
- stringi 1.2.4
- stringr 1.3.1
- tcltk 3.2.5
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- tibble 2.0.1
- tools 3.2.5
- translations 3.2.5
- utf8 1.1.4
- utils 3.2.5
- viridisLite 0.3.0
- ubuntu/adduser 3.113 nmu3ubuntu4
- ubuntu/apt-utils 1.2.29ubuntu0.1
- ubuntu/apt 1.2.29ubuntu0.1
- ubuntu/autoconf 2.69-9
- ubuntu/automake 1:1.15-4ubuntu1
- ubuntu/autotools-dev 20150820.1
- ubuntu/base-files 9.4ubuntu4.7
- ubuntu/base-passwd 3.5.39
- ubuntu/bash 4.3-14ubuntu1.2
- ubuntu/bc 1.06.95-9build1
- ubuntu/bcftools 1.2-2
- ubuntu/bedtools 2.25.0-1
- ubuntu/binutils 2.26.1-1ubuntu1~16.04.7
- ubuntu/bsdmainutils 9.0.6ubuntu3
- ubuntu/bsdutils 1:2.27.1-6ubuntu3.6
- ubuntu/build-essential 12.1ubuntu2
- ubuntu/bzip2-doc 1.0.6-8
- ubuntu/bzip2 1.0.6-8ubuntu0.2
- ubuntu/ca-certificates-java 20160321ubuntu1
- ubuntu/ca-certificates 20170717~16.04.2
- ubuntu/cdbs 0.4.130ubuntu2
- ubuntu/coreutils 8.25-2ubuntu3~16.04
- ubuntu/cpp-5 5.4.0-6ubuntu1~16.04.11
- ubuntu/cpp 4:5.3.1-1ubuntu1
- ubuntu/cron 3.0pl1-128ubuntu2
- ubuntu/curl 7.47.0-1ubuntu2.14
- ubuntu/dash 0.5.8-2.1ubuntu2
- ubuntu/dbus 1.10.6-1ubuntu3.3
- ubuntu/debconf 1.5.58ubuntu1
- ubuntu/debhelper 9.20160115ubuntu3
- ubuntu/debianutils 4.7
- ubuntu/dh-python 2.20151103ubuntu1.1
- ubuntu/dh-strip-nondeterminism 0.015-1
- ubuntu/dh-translations 129
- ubuntu/diffutils 1:3.3-3
- ubuntu/distro-info-data 0.28ubuntu0.9
- ubuntu/dpkg-dev 1.18.4ubuntu1.5
- ubuntu/dpkg 1.18.4ubuntu1.5
- ubuntu/e2fslibs 1.42.13-1ubuntu1
- ubuntu/e2fsprogs 1.42.13-1ubuntu1
- ubuntu/fakeroot 1.20.2-1ubuntu1
- ubuntu/file 1:5.25-2ubuntu1.1
- ubuntu/findutils 4.6.0 git 20160126-2
- ubuntu/fontconfig-config 2.11.94-0ubuntu1.1
- ubuntu/fontconfig 2.11.94-0ubuntu1.1
- ubuntu/fonts-dejavu-core 2.35-1
- ubuntu/fonts-dejavu-extra 2.35-1
- ubuntu/g -5 5.4.0-6ubuntu1~16.04.11
- ubuntu/g 4:5.3.1-1ubuntu1
- ubuntu/gcc-5-base 5.4.0-6ubuntu1~16.04.11
- ubuntu/gcc-5 5.4.0-6ubuntu1~16.04.11
- ubuntu/gcc-6-base 6.0.1-0ubuntu1
- ubuntu/gcc 4:5.3.1-1ubuntu1
- ubuntu/gettext-base 0.19.7-2ubuntu3.1
- ubuntu/gettext 0.19.7-2ubuntu3.1
- ubuntu/gfortran-5 5.4.0-6ubuntu1~16.04.11
- ubuntu/gfortran 4:5.3.1-1ubuntu1
- ubuntu/gir1.2-glib-2.0 1.46.0-3ubuntu1
- ubuntu/git-man 1:2.7.4-0ubuntu1.9
- ubuntu/git 1:2.7.4-0ubuntu1.9
- ubuntu/gnupg 1.4.20-1ubuntu3.3
- ubuntu/google-cloud-sdk 230.0.0-0
- ubuntu/gpgv 1.4.20-1ubuntu3.3
- ubuntu/grep 2.25-1~16.04.1
- ubuntu/groff-base 1.22.3-7
- ubuntu/gzip 1.6-4ubuntu1
- ubuntu/hicolor-icon-theme 0.15-0ubuntu1.1
- ubuntu/hostname 3.16ubuntu2
- ubuntu/ifupdown 0.8.10ubuntu1.4
- ubuntu/init-system-helpers 1.29ubuntu4
- ubuntu/init 1.29ubuntu4
- ubuntu/initscripts 2.88dsf-59.3ubuntu2
- ubuntu/insserv 1.14.0-5ubuntu3
- ubuntu/intltool-debian 0.35.0 20060710.4
- ubuntu/intltool 0.51.0-2ubuntu1.16.04.1
- ubuntu/iproute2 4.3.0-1ubuntu3.16.04.4
- ubuntu/isc-dhcp-client 4.3.3-5ubuntu12.10
- ubuntu/isc-dhcp-common 4.3.3-5ubuntu12.10
- ubuntu/iso-codes 3.65-1
- ubuntu/java-common 0.56ubuntu2
- ubuntu/krb5-locales 1.13.2 dfsg-5ubuntu2.1
- ubuntu/less 481-2.1ubuntu0.2
- ubuntu/libacl1 2.2.52-3
- ubuntu/libalgorithm-diff-perl 1.19.03-1
- ubuntu/libalgorithm-diff-xs-perl 0.04-4build1
- ubuntu/libalgorithm-merge-perl 0.08-3
- ubuntu/libapparmor1 2.10.95-0ubuntu2.10
- ubuntu/libapt-inst2.0 1.2.29ubuntu0.1
- ubuntu/libapt-pkg5.0 1.2.29ubuntu0.1
- ubuntu/libarchive-zip-perl 1.56-2ubuntu0.1
- ubuntu/libasan2 5.4.0-6ubuntu1~16.04.11
- ubuntu/libasn1-8-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libasound2-data 1.1.0-0ubuntu1
- ubuntu/libasound2 1.1.0-0ubuntu1
- ubuntu/libasprintf-dev 0.19.7-2ubuntu3.1
- ubuntu/libasprintf0v5 0.19.7-2ubuntu3.1
- ubuntu/libasyncns0 0.8-5build1
- ubuntu/libatk1.0-0 2.18.0-1
- ubuntu/libatk1.0-data 2.18.0-1
- ubuntu/libatm1 1:2.5.1-1.5
- ubuntu/libatomic1 5.4.0-6ubuntu1~16.04.11
- ubuntu/libattr1 1:2.4.47-2
- ubuntu/libaudit-common 1:2.4.5-1ubuntu2.1
- ubuntu/libaudit1 1:2.4.5-1ubuntu2.1
- ubuntu/libauthen-sasl-perl 2.1600-1
- ubuntu/libavahi-client3 0.6.32~rc dfsg-1ubuntu2.2
- ubuntu/libavahi-common-data 0.6.32~rc dfsg-1ubuntu2.2
- ubuntu/libavahi-common3 0.6.32~rc dfsg-1ubuntu2.2
- ubuntu/libblas-common 3.6.0-2ubuntu2
- ubuntu/libblas-dev 3.6.0-2ubuntu2
- ubuntu/libblas3 3.6.0-2ubuntu2
- ubuntu/libblkid1 2.27.1-6ubuntu3.6
- ubuntu/libbsd0 0.8.2-1
- ubuntu/libbz2-1.0 1.0.6-8ubuntu0.2
- ubuntu/libbz2-dev 1.0.6-8ubuntu0.2
- ubuntu/libc-bin 2.23-0ubuntu10
- ubuntu/libc-dev-bin 2.23-0ubuntu10
- ubuntu/libc6-dev 2.23-0ubuntu10
- ubuntu/libc6 2.23-0ubuntu10
- ubuntu/libcairo2 1.14.6-1
- ubuntu/libcap-ng0 0.7.7-1
- ubuntu/libcap2-bin 1:2.24-12
- ubuntu/libcap2 1:2.24-12
- ubuntu/libcc1-0 5.4.0-6ubuntu1~16.04.11
- ubuntu/libcilkrts5 5.4.0-6ubuntu1~16.04.11
- ubuntu/libcomerr2 1.42.13-1ubuntu1
- ubuntu/libcroco3 0.6.11-1
- ubuntu/libcryptsetup4 2:1.6.6-5ubuntu2.1
- ubuntu/libcups2 2.1.3-4ubuntu0.7
- ubuntu/libcurl3-gnutls 7.47.0-1ubuntu2.14
- ubuntu/libcurl3 7.47.0-1ubuntu2.11
- ubuntu/libcurl4-gnutls-dev 7.47.0-1ubuntu2.14
- ubuntu/libdatrie1 0.2.10-2
- ubuntu/libdb5.3 5.3.28-11ubuntu0.1
- ubuntu/libdbus-1-3 1.10.6-1ubuntu3.3
- ubuntu/libdbus-glib-1-2 0.106-1
- ubuntu/libdebconfclient0 0.198ubuntu1
- ubuntu/libdevmapper1.02.1 2:1.02.110-1ubuntu10
- ubuntu/libdns-export162 1:9.10.3.dfsg.P4-8ubuntu1.11
- ubuntu/libdpkg-perl 1.18.4ubuntu1.5
- ubuntu/libdrm-amdgpu1 2.4.91-2~16.04.1
- ubuntu/libdrm-common 2.4.91-2~16.04.1
- ubuntu/libdrm-intel1 2.4.91-2~16.04.1
- ubuntu/libdrm-nouveau2 2.4.91-2~16.04.1
- ubuntu/libdrm-radeon1 2.4.91-2~16.04.1
- ubuntu/libdrm2 2.4.91-2~16.04.1
- ubuntu/libedit2 3.1-20150325-1ubuntu2
- ubuntu/libelf1 0.165-3ubuntu1.1
- ubuntu/libencode-locale-perl 1.05-1
- ubuntu/liberror-perl 0.17-1.2
- ubuntu/libexpat1 2.1.0-7ubuntu0.16.04.3
- ubuntu/libfakeroot 1.20.2-1ubuntu1
- ubuntu/libfdisk1 2.27.1-6ubuntu3.6
- ubuntu/libffi6 3.2.1-4
- ubuntu/libfile-basedir-perl 0.07-1
- ubuntu/libfile-desktopentry-perl 0.22-1
- ubuntu/libfile-fcntllock-perl 0.22-3
- ubuntu/libfile-listing-perl 6.04-1
- ubuntu/libfile-mimeinfo-perl 0.27-1
- ubuntu/libfile-stripnondeterminism-perl 0.015-1
- ubuntu/libflac8 1.3.1-4
- ubuntu/libfont-afm-perl 1.20-1
- ubuntu/libfontconfig1 2.11.94-0ubuntu1.1
- ubuntu/libfontenc1 1:1.1.3-1
- ubuntu/libfreetype6 2.6.1-0.1ubuntu2.3
- ubuntu/libgcc-5-dev 5.4.0-6ubuntu1~16.04.11
- ubuntu/libgcc1 1:6.0.1-0ubuntu1
- ubuntu/libgcrypt20 1.6.5-2ubuntu0.5
- ubuntu/libgdbm3 1.8.3-13.1
- ubuntu/libgdk-pixbuf2.0-0 2.32.2-1ubuntu1.5
- ubuntu/libgdk-pixbuf2.0-common 2.32.2-1ubuntu1.5
- ubuntu/libgettextpo-dev 0.19.7-2ubuntu3.1
- ubuntu/libgettextpo0 0.19.7-2ubuntu3.1
- ubuntu/libgfortran-5-dev 5.4.0-6ubuntu1~16.04.11
- ubuntu/libgfortran3 5.4.0-6ubuntu1~16.04.11
- ubuntu/libgif7 5.1.4-0.3~16.04
- ubuntu/libgirepository-1.0-1 1.46.0-3ubuntu1
- ubuntu/libgl1-mesa-dri 18.0.5-0ubuntu0~16.04.1
- ubuntu/libgl1-mesa-glx 18.0.5-0ubuntu0~16.04.1
- ubuntu/libglapi-mesa 18.0.5-0ubuntu0~16.04.1
- ubuntu/libglib2.0-0 2.48.2-0ubuntu4.1
- ubuntu/libglib2.0-data 2.48.2-0ubuntu4.1
- ubuntu/libgmp10 2:6.1.0 dfsg-2
- ubuntu/libgnutls30 3.4.10-4ubuntu1.4
- ubuntu/libgomp1 5.4.0-6ubuntu1~16.04.11
- ubuntu/libgpg-error0 1.21-2ubuntu1
- ubuntu/libgraphite2-3 1.3.10-0ubuntu0.16.04.1
- ubuntu/libgsl-dev 2.1 dfsg-2
- ubuntu/libgsl2 2.1 dfsg-2
- ubuntu/libgssapi-krb5-2 1.13.2 dfsg-5ubuntu2.1
- ubuntu/libgssapi3-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libgtk2.0-0 2.24.30-1ubuntu1.16.04.2
- ubuntu/libgtk2.0-bin 2.24.30-1ubuntu1.16.04.2
- ubuntu/libgtk2.0-common 2.24.30-1ubuntu1.16.04.2
- ubuntu/libharfbuzz0b 1.0.1-1ubuntu0.1
- ubuntu/libhcrypto4-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libheimbase1-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libheimntlm0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libhogweed4 3.2-1ubuntu0.16.04.1
- ubuntu/libhtml-form-perl 6.03-1
- ubuntu/libhtml-format-perl 2.11-2
- ubuntu/libhtml-parser-perl 3.72-1
- ubuntu/libhtml-tagset-perl 3.20-2
- ubuntu/libhtml-tree-perl 5.03-2
- ubuntu/libhts1 1.2.1-2ubuntu1
- ubuntu/libhttp-cookies-perl 6.01-1
- ubuntu/libhttp-daemon-perl 6.01-1
- ubuntu/libhttp-date-perl 6.02-1
- ubuntu/libhttp-message-perl 6.11-1
- ubuntu/libhttp-negotiate-perl 6.00-2
- ubuntu/libhx509-5-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libice-dev 2:1.0.9-1
- ubuntu/libice6 2:1.0.9-1
- ubuntu/libicu55 55.1-7ubuntu0.4
- ubuntu/libidn11 1.32-3ubuntu1.2
- ubuntu/libio-html-perl 1.001-1
- ubuntu/libio-socket-ssl-perl 2.024-1
- ubuntu/libipc-system-simple-perl 1.25-3
- ubuntu/libisc-export160 1:9.10.3.dfsg.P4-8ubuntu1.11
- ubuntu/libisl15 0.16.1-1
- ubuntu/libitm1 5.4.0-6ubuntu1~16.04.11
- ubuntu/libjbig0 2.1-3.1
- ubuntu/libjpeg-dev 8c-2ubuntu8
- ubuntu/libjpeg-turbo8-dev 1.4.2-0ubuntu3.1
- ubuntu/libjpeg-turbo8 1.4.2-0ubuntu3.1
- ubuntu/libjpeg8-dev 8c-2ubuntu8
- ubuntu/libjpeg8 8c-2ubuntu8
- ubuntu/libjson-c2 0.11-4ubuntu2
- ubuntu/libk5crypto3 1.13.2 dfsg-5ubuntu2.1
- ubuntu/libkeyutils1 1.5.9-8ubuntu1
- ubuntu/libkmod2 22-1ubuntu5.1
- ubuntu/libkrb5-26-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libkrb5-3 1.13.2 dfsg-5ubuntu2.1
- ubuntu/libkrb5support0 1.13.2 dfsg-5ubuntu2.1
- ubuntu/liblapack-dev 3.6.0-2ubuntu2
- ubuntu/liblapack3 3.6.0-2ubuntu2
- ubuntu/liblcms2-2 2.6-3ubuntu2.1
- ubuntu/libldap-2.4-2 2.4.42 dfsg-2ubuntu3.4
- ubuntu/libllvm6.0 1:6.0-1ubuntu2~16.04.1
- ubuntu/liblsan0 5.4.0-6ubuntu1~16.04.11
- ubuntu/liblwp-mediatypes-perl 6.02-1
- ubuntu/liblwp-protocol-https-perl 6.06-2
- ubuntu/liblz4-1 0.0~r131-2ubuntu2
- ubuntu/liblzma-dev 5.1.1alpha 20120614-2ubuntu2
- ubuntu/liblzma5 5.1.1alpha 20120614-2ubuntu2
- ubuntu/libmagic1 1:5.25-2ubuntu1.1
- ubuntu/libmail-sendmail-perl 0.79.16-1
- ubuntu/libmailtools-perl 2.13-1
- ubuntu/libmnl0 1.0.3-5
- ubuntu/libmount1 2.27.1-6ubuntu3.6
- ubuntu/libmpc3 1.0.3-1
- ubuntu/libmpdec2 2.4.2-1
- ubuntu/libmpfr4 3.1.4-1
- ubuntu/libmpx0 5.4.0-6ubuntu1~16.04.11
- ubuntu/libncurses5-dev 6.0 20160213-1ubuntu1
- ubuntu/libncurses5 6.0 20160213-1ubuntu1
- ubuntu/libncursesw5 6.0 20160213-1ubuntu1
- ubuntu/libnet-dbus-perl 1.1.0-3build1
- ubuntu/libnet-http-perl 6.09-1
- ubuntu/libnet-smtp-ssl-perl 1.03-1
- ubuntu/libnet-ssleay-perl 1.72-1build1
- ubuntu/libnettle6 3.2-1ubuntu0.16.04.1
- ubuntu/libnspr4 2:4.13.1-0ubuntu0.16.04.1
- ubuntu/libnss3-nssdb 2:3.28.4-0ubuntu0.16.04.4
- ubuntu/libnss3 2:3.28.4-0ubuntu0.16.04.4
- ubuntu/libogg0 1.3.2-1
- ubuntu/libp11-kit0 0.23.2-5~ubuntu16.04.1
- ubuntu/libpam-modules-bin 1.1.8-3.2ubuntu2.1
- ubuntu/libpam-modules 1.1.8-3.2ubuntu2.1
- ubuntu/libpam-runtime 1.1.8-3.2ubuntu2.1
- ubuntu/libpam0g 1.1.8-3.2ubuntu2.1
- ubuntu/libpango-1.0-0 1.38.1-1
- ubuntu/libpangocairo-1.0-0 1.38.1-1
- ubuntu/libpangoft2-1.0-0 1.38.1-1
- ubuntu/libpaper-utils 1.1.24 nmu4ubuntu1
- ubuntu/libpaper1 1.1.24 nmu4ubuntu1
- ubuntu/libpciaccess0 0.13.4-1
- ubuntu/libpcre16-3 2:8.38-3.1
- ubuntu/libpcre3-dev 2:8.38-3.1
- ubuntu/libpcre32-3 2:8.38-3.1
- ubuntu/libpcre3 2:8.38-3.1
- ubuntu/libpcrecpp0v5 2:8.38-3.1
- ubuntu/libpcsclite1 1.8.14-1ubuntu1.16.04.1
- ubuntu/libperl-dev 5.22.1-9ubuntu0.6
- ubuntu/libperl5.22 5.22.1-9ubuntu0.6
- ubuntu/libpipeline1 1.4.1-2
- ubuntu/libpixman-1-0 0.33.6-1
- ubuntu/libpng12-0 1.2.54-1ubuntu1.1
- ubuntu/libpng12-dev 1.2.54-1ubuntu1.1
- ubuntu/libpopt0 1.16-10
- ubuntu/libprocps4 2:3.3.10-4ubuntu2.4
- ubuntu/libpthread-stubs0-dev 0.3-4
- ubuntu/libpulse0 1:8.0-0ubuntu3.10
- ubuntu/libpython-stdlib 2.7.12-1~16.04
- ubuntu/libpython2.7-minimal 2.7.12-1ubuntu0~16.04.4
- ubuntu/libpython2.7-stdlib 2.7.12-1ubuntu0~16.04.4
- ubuntu/libpython3-stdlib 3.5.1-3
- ubuntu/libpython3.5-minimal 3.5.2-2ubuntu0~16.04.5
- ubuntu/libpython3.5-stdlib 3.5.2-2ubuntu0~16.04.5
- ubuntu/libquadmath0 5.4.0-6ubuntu1~16.04.11
- ubuntu/libreadline-dev 6.3-8ubuntu2
- ubuntu/libreadline6-dev 6.3-8ubuntu2
- ubuntu/libreadline6 6.3-8ubuntu2
- ubuntu/libroken18-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/librtmp1 2.4 20151223.gitfa8646d-1ubuntu0.1
- ubuntu/libsasl2-2 2.1.26.dfsg1-14ubuntu0.1
- ubuntu/libsasl2-modules-db 2.1.26.dfsg1-14ubuntu0.1
- ubuntu/libsasl2-modules 2.1.26.dfsg1-14ubuntu0.1
- ubuntu/libseccomp2 2.3.1-2.1ubuntu2~16.04.1
- ubuntu/libselinux1 2.4-3build2
- ubuntu/libsemanage-common 2.3-1build3
- ubuntu/libsemanage1 2.3-1build3
- ubuntu/libsensors4 1:3.4.0-2
- ubuntu/libsepol1 2.4-2
- ubuntu/libsigsegv2 2.10-4
- ubuntu/libsm-dev 2:1.2.2-1
- ubuntu/libsm6 2:1.2.2-1
- ubuntu/libsmartcols1 2.27.1-6ubuntu3.6
- ubuntu/libsndfile1 1.0.25-10ubuntu0.16.04.1
- ubuntu/libsqlite3-0 3.11.0-1ubuntu1
- ubuntu/libss2 1.42.13-1ubuntu1
- ubuntu/libssl-dev 1.0.2g-1ubuntu4.16
- ubuntu/libssl-doc 1.0.2g-1ubuntu4.16
- ubuntu/libssl1.0.0 1.0.2g-1ubuntu4.16
- ubuntu/libstdc -5-dev 5.4.0-6ubuntu1~16.04.11
- ubuntu/libstdc 6 5.4.0-6ubuntu1~16.04.11
- ubuntu/libsys-hostname-long-perl 1.5-1
- ubuntu/libsystemd0 229-4ubuntu21.15
- ubuntu/libtasn1-6 4.7-3ubuntu0.16.04.3
- ubuntu/libtcl8.6 8.6.5 dfsg-2
- ubuntu/libtext-iconv-perl 1.7-5build4
- ubuntu/libthai-data 0.1.24-2
- ubuntu/libthai0 0.1.24-2
- ubuntu/libtie-ixhash-perl 1.23-2
- ubuntu/libtiff5 4.0.6-1ubuntu0.5
- ubuntu/libtimedate-perl 2.3000-2
- ubuntu/libtinfo-dev 6.0 20160213-1ubuntu1
- ubuntu/libtinfo5 6.0 20160213-1ubuntu1
- ubuntu/libtk8.6 8.6.5-1
- ubuntu/libtsan0 5.4.0-6ubuntu1~16.04.11
- ubuntu/libtxc-dxtn-s2tc0 0~git20131104-1.1
- ubuntu/libubsan0 5.4.0-6ubuntu1~16.04.11
- ubuntu/libudev1 229-4ubuntu21.15
- ubuntu/libunistring0 0.9.3-5.2ubuntu1
- ubuntu/liburi-perl 1.71-1
- ubuntu/libusb-0.1-4 2:0.1.12-28
- ubuntu/libustr-1.0-1 1.0.4-5
- ubuntu/libuuid1 2.27.1-6ubuntu3.6
- ubuntu/libvorbis0a 1.3.5-3ubuntu0.2
- ubuntu/libvorbisenc2 1.3.5-3ubuntu0.2
- ubuntu/libwind0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libwrap0 7.6.q-25
- ubuntu/libwww-perl 6.15-1
- ubuntu/libwww-robotrules-perl 6.01-1
- ubuntu/libx11-6 2:1.6.3-1ubuntu2.1
- ubuntu/libx11-data 2:1.6.3-1ubuntu2.1
- ubuntu/libx11-dev 2:1.6.3-1ubuntu2.1
- ubuntu/libx11-doc 2:1.6.3-1ubuntu2.1
- ubuntu/libx11-protocol-perl 0.56-7
- ubuntu/libx11-xcb1 2:1.6.3-1ubuntu2.1
- ubuntu/libxau-dev 1:1.0.8-1
- ubuntu/libxau6 1:1.0.8-1
- ubuntu/libxaw7 2:1.0.13-1
- ubuntu/libxcb-dri2-0 1.11.1-1ubuntu1
- ubuntu/libxcb-dri3-0 1.11.1-1ubuntu1
- ubuntu/libxcb-glx0 1.11.1-1ubuntu1
- ubuntu/libxcb-present0 1.11.1-1ubuntu1
- ubuntu/libxcb-render0 1.11.1-1ubuntu1
- ubuntu/libxcb-shape0 1.11.1-1ubuntu1
- ubuntu/libxcb-shm0 1.11.1-1ubuntu1
- ubuntu/libxcb-sync1 1.11.1-1ubuntu1
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- org.broadinstitute.hellbender.Main:gatk-package 4.1.0.0-spark
- org.broadinstitute.hellbender.Main:gatk-package 4.1.4.1-local
- org.broadinstitute.hellbender.Main:gatk-package 4.1.4.1-spark
- org.codehaus.janino:commons-compiler 3.0.9
- org.codehaus.janino:janino 3.0.9
- org.codehaus.jettison:jettison 1.1
- org.codehaus.mojo:animal-sniffer-annotations 1.18
- org.codehaus.plexus:plexus-interpolation 1.0
- org.codehaus.plexus:plexus-utils 1.5.6
- org.debian.security.UpdateCertificates:ca-certificates-java *
- org.disq-bio:disq 0.2.0
- org.disq-bio:disq 0.3.4
- org.eclipse.jetty:jetty-client 9.3.11.v20160721
- org.eclipse.jetty:jetty-client 9.3.24.v20180605
- org.eclipse.jetty:jetty-continuation 9.3.11.v20160721
- org.eclipse.jetty:jetty-continuation 9.3.24.v20180605
- org.eclipse.jetty:jetty-http 9.3.11.v20160721
- org.eclipse.jetty:jetty-http 9.3.24.v20180605
- org.eclipse.jetty:jetty-io 9.3.11.v20160721
- org.eclipse.jetty:jetty-io 9.3.24.v20180605
- org.eclipse.jetty:jetty-plus 9.3.11.v20160721
- org.eclipse.jetty:jetty-plus 9.3.24.v20180605
- org.eclipse.jetty:jetty-proxy 9.3.11.v20160721
- org.eclipse.jetty:jetty-proxy 9.3.24.v20180605
- org.eclipse.jetty:jetty-security 9.3.11.v20160721
- org.eclipse.jetty:jetty-security 9.3.24.v20180605
- org.eclipse.jetty:jetty-server 9.3.11.v20160721
- org.eclipse.jetty:jetty-server 9.3.24.v20180605
- org.eclipse.jetty:jetty-servlet 9.3.11.v20160721
- org.eclipse.jetty:jetty-servlet 9.3.24.v20180605
- org.eclipse.jetty:jetty-servlets 9.3.11.v20160721
- org.eclipse.jetty:jetty-servlets 9.3.24.v20180605
- org.eclipse.jetty:jetty-util 9.3.11.v20160721
- org.eclipse.jetty:jetty-util 9.3.24.v20180605
- org.fusesource.leveldbjni:leveldbjni-all 1.8
- org.genomicsdb:genomicsdb 1.0.0-rc2
- org.genomicsdb:genomicsdb 1.1.2.2
- org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
- org.glassfish.hk2.external:javax.inject 2.4.0-b34
- org.glassfish.hk2:hk2-api 2.4.0-b34
- org.glassfish.hk2:hk2-locator 2.4.0-b34
- org.glassfish.hk2:hk2-utils 2.4.0-b34
- org.glassfish.hk2:osgi-resource-locator 1.0.1
- org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
- org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
- org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
- org.glassfish.jersey.core:jersey-client 2.22.2
- org.glassfish.jersey.core:jersey-common 2.22.2
- org.glassfish.jersey.core:jersey-server 2.22.2
- org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
- org.javassist:javassist 3.16.1-GA
- org.javassist:javassist 3.18.2-GA
- org.jgrapht:jgrapht-core 0.9.1
- org.jpmml:pmml-model 1.2.15
- org.jpmml:pmml-schema 1.2.15
- org.jvnet:tiger-types 1.4
- org.mortbay.jetty:jetty-sslengine 6.1.26
- org.mortbay.jetty:jetty-util 6.1.26
- org.ojalgo:ojalgo-commons-math3 1.0.0
- org.ojalgo:ojalgo 44.0.0
- org.reflections:reflections 0.9.10
- org.reflections:reflections 0.9.9-RC1
- org.roaringbitmap:RoaringBitmap 0.5.11
- org.roaringbitmap:RoaringBitmap 0.7.45
- org.roaringbitmap:shims 0.7.45
- org.simpleframework:simple-xml 2.0.4
- org.slf4j:jcl-over-slf4j 1.7.16
- org.slf4j:slf4j-api 1.6.1
- org.slf4j:slf4j-api 1.7.2
- org.slf4j:slf4j-api 1.7.25
- org.slf4j:slf4j-log4j12 1.7.21
- org.slf4j:slf4j-log4j12 1.7.5
- org.spark-project.spark:unused 1.0.0
- org.threeten:threetenbp 1.3.3
- org.xerial.snappy:snappy-java 1.0.3-rc3
- org.xerial:sqlite-jdbc 3.20.1
- resources:resources 1.8.0_181
- resources:resources 1.8.0_191
- rt:rt 1.8.0_181
- rt:rt 1.8.0_191
- sa-jdi:sa-jdi *
- tools:tools *
- us.levk:drmaa-common 1.0
- us.levk:drmaa-gridengine 6.2u5
- zipfs:zipfs 1.8.0_181
- zipfs:zipfs 1.8.0_191
- Django 1.10.0
- SocksiPy-branch 1.01
- argparse 1.2.1
- boto 2.49.0
- coverage 3.7.1
- flake8 3.4.1
- jsonpickle 0.9.3
- mock 1.0.1
- mock 2.0.0
- nose 1.3.3
- oauth2client 3.0.0
- oauth2client 4.1.3
- ordereddict 1.1
- pytest-cov 2.5.1
- pytest-forked 0.2
- pytest-randomly 1.2.1
- pytest-timeout 1.2.0
- pytest-xdist 1.20.0
- pytest 3.2.1
- rsa 3.1.4
- simplejson 3.5.2
- simplejson 3.6.5
- six 1.10.0
- unittest2 0.5.1