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nbutter/gatk_tools : latest
GATK and other bioinformatics tools packaged together.
Latest release: over 5 years ago - 44 downloads - 869 dependencies
JSONDependencies
- HMM 1.0
- KernSmooth 2.23-15
- MASS 7.3-51.1
- R6 2.3.0
- RColorBrewer 1.1-2
- Rcpp 1.0.0
- assertthat 0.2.0
- base 3.2.5
- bitops 1.0-6
- caTools 1.17.1.1
- cli 1.0.1
- colorspace 1.4-0
- compiler 3.2.5
- crayon 1.3.4
- data.table 1.10.4-2
- datasets 3.2.5
- digest 0.6.18
- fansi 0.4.0
- gdata 2.18.0
- getopt 1.20.0
- ggplot2 2.2.1
- glue 1.3.0
- gplots 3.0.1
- grDevices 3.2.5
- graphics 3.2.5
- grid 3.2.5
- gsalib 2.1
- gtable 0.2.0
- gtools 3.8.1
- labeling 0.3
- lazyeval 0.2.1
- magrittr 1.5
- methods 3.2.5
- munsell 0.5.0
- optparse 1.3.2
- parallel 3.2.5
- pillar 1.3.1
- pkgconfig 2.0.2
- plyr 1.8.4
- reshape2 1.4.3
- rlang 0.3.1
- scales 1.0.0
- splines 3.2.5
- stats4 3.2.5
- stats 3.2.5
- stringi 1.2.4
- stringr 1.3.1
- tcltk 3.2.5
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- tibble 2.0.1
- tools 3.2.5
- translations 3.2.5
- utf8 1.1.4
- utils 3.2.5
- viridisLite 0.3.0
- ubuntu/adduser 3.113 nmu3ubuntu4
- ubuntu/apt-utils 1.2.29ubuntu0.1
- ubuntu/apt 1.2.29ubuntu0.1
- ubuntu/autoconf 2.69-9
- ubuntu/automake 1:1.15-4ubuntu1
- ubuntu/autotools-dev 20150820.1
- ubuntu/base-files 9.4ubuntu4.7
- ubuntu/base-passwd 3.5.39
- ubuntu/bash 4.3-14ubuntu1.2
- ubuntu/bc 1.06.95-9build1
- ubuntu/bedtools 2.25.0-1
- ubuntu/binutils 2.26.1-1ubuntu1~16.04.7
- ubuntu/bsdmainutils 9.0.6ubuntu3
- ubuntu/bsdutils 1:2.27.1-6ubuntu3.6
- ubuntu/build-essential 12.1ubuntu2
- ubuntu/bzip2-doc 1.0.6-8
- ubuntu/bzip2 1.0.6-8
- ubuntu/ca-certificates-java 20160321ubuntu1
- ubuntu/ca-certificates 20170717~16.04.2
- ubuntu/cdbs 0.4.130ubuntu2
- ubuntu/coreutils 8.25-2ubuntu3~16.04
- ubuntu/cpp-5 5.4.0-6ubuntu1~16.04.11
- ubuntu/cpp 4:5.3.1-1ubuntu1
- ubuntu/cron 3.0pl1-128ubuntu2
- ubuntu/curl 7.47.0-1ubuntu2.11
- ubuntu/dash 0.5.8-2.1ubuntu2
- ubuntu/dbus 1.10.6-1ubuntu3.3
- ubuntu/debconf 1.5.58ubuntu1
- ubuntu/debhelper 9.20160115ubuntu3
- ubuntu/debianutils 4.7
- ubuntu/dh-python 2.20151103ubuntu1.1
- ubuntu/dh-strip-nondeterminism 0.015-1
- ubuntu/dh-translations 129
- ubuntu/diffutils 1:3.3-3
- ubuntu/distro-info-data 0.28ubuntu0.9
- ubuntu/dpkg-dev 1.18.4ubuntu1.5
- ubuntu/dpkg 1.18.4ubuntu1.5
- ubuntu/e2fslibs 1.42.13-1ubuntu1
- ubuntu/e2fsprogs 1.42.13-1ubuntu1
- ubuntu/fakeroot 1.20.2-1ubuntu1
- ubuntu/file 1:5.25-2ubuntu1.1
- ubuntu/findutils 4.6.0 git 20160126-2
- ubuntu/fontconfig-config 2.11.94-0ubuntu1.1
- ubuntu/fontconfig 2.11.94-0ubuntu1.1
- ubuntu/fonts-dejavu-core 2.35-1
- ubuntu/fonts-dejavu-extra 2.35-1
- ubuntu/g -5 5.4.0-6ubuntu1~16.04.11
- ubuntu/g 4:5.3.1-1ubuntu1
- ubuntu/gcc-5-base 5.4.0-6ubuntu1~16.04.11
- ubuntu/gcc-5 5.4.0-6ubuntu1~16.04.11
- ubuntu/gcc-6-base 6.0.1-0ubuntu1
- ubuntu/gcc 4:5.3.1-1ubuntu1
- ubuntu/gettext-base 0.19.7-2ubuntu3.1
- ubuntu/gettext 0.19.7-2ubuntu3.1
- ubuntu/gfortran-5 5.4.0-6ubuntu1~16.04.11
- ubuntu/gfortran 4:5.3.1-1ubuntu1
- ubuntu/gir1.2-glib-2.0 1.46.0-3ubuntu1
- ubuntu/gnupg 1.4.20-1ubuntu3.3
- ubuntu/google-cloud-sdk 230.0.0-0
- ubuntu/gpgv 1.4.20-1ubuntu3.3
- ubuntu/grep 2.25-1~16.04.1
- ubuntu/groff-base 1.22.3-7
- ubuntu/gzip 1.6-4ubuntu1
- ubuntu/hicolor-icon-theme 0.15-0ubuntu1.1
- ubuntu/hostname 3.16ubuntu2
- ubuntu/ifupdown 0.8.10ubuntu1.4
- ubuntu/init-system-helpers 1.29ubuntu4
- ubuntu/init 1.29ubuntu4
- ubuntu/initscripts 2.88dsf-59.3ubuntu2
- ubuntu/insserv 1.14.0-5ubuntu3
- ubuntu/intltool-debian 0.35.0 20060710.4
- ubuntu/intltool 0.51.0-2ubuntu1.16.04.1
- ubuntu/iproute2 4.3.0-1ubuntu3.16.04.4
- ubuntu/isc-dhcp-client 4.3.3-5ubuntu12.10
- ubuntu/isc-dhcp-common 4.3.3-5ubuntu12.10
- ubuntu/iso-codes 3.65-1
- ubuntu/java-common 0.56ubuntu2
- ubuntu/krb5-locales 1.13.2 dfsg-5ubuntu2.1
- ubuntu/less 481-2.1ubuntu0.2
- ubuntu/libacl1 2.2.52-3
- ubuntu/libalgorithm-diff-perl 1.19.03-1
- ubuntu/libalgorithm-diff-xs-perl 0.04-4build1
- ubuntu/libalgorithm-merge-perl 0.08-3
- ubuntu/libapparmor1 2.10.95-0ubuntu2.10
- ubuntu/libapt-inst2.0 1.2.29ubuntu0.1
- ubuntu/libapt-pkg5.0 1.2.29ubuntu0.1
- ubuntu/libarchive-zip-perl 1.56-2ubuntu0.1
- ubuntu/libasan2 5.4.0-6ubuntu1~16.04.11
- ubuntu/libasn1-8-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libasound2-data 1.1.0-0ubuntu1
- ubuntu/libasound2 1.1.0-0ubuntu1
- ubuntu/libasprintf-dev 0.19.7-2ubuntu3.1
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- ubuntu/libasyncns0 0.8-5build1
- ubuntu/libatk1.0-0 2.18.0-1
- ubuntu/libatk1.0-data 2.18.0-1
- ubuntu/libatm1 1:2.5.1-1.5
- ubuntu/libatomic1 5.4.0-6ubuntu1~16.04.11
- ubuntu/libattr1 1:2.4.47-2
- ubuntu/libaudit-common 1:2.4.5-1ubuntu2.1
- ubuntu/libaudit1 1:2.4.5-1ubuntu2.1
- ubuntu/libauthen-sasl-perl 2.1600-1
- ubuntu/libavahi-client3 0.6.32~rc dfsg-1ubuntu2.2
- ubuntu/libavahi-common-data 0.6.32~rc dfsg-1ubuntu2.2
- ubuntu/libavahi-common3 0.6.32~rc dfsg-1ubuntu2.2
- ubuntu/libblas-common 3.6.0-2ubuntu2
- ubuntu/libblas-dev 3.6.0-2ubuntu2
- ubuntu/libblas3 3.6.0-2ubuntu2
- ubuntu/libblkid1 2.27.1-6ubuntu3.6
- ubuntu/libbsd0 0.8.2-1
- ubuntu/libbz2-1.0 1.0.6-8
- ubuntu/libbz2-dev 1.0.6-8
- ubuntu/libc-bin 2.23-0ubuntu10
- ubuntu/libc-dev-bin 2.23-0ubuntu10
- ubuntu/libc6-dev 2.23-0ubuntu10
- ubuntu/libc6 2.23-0ubuntu10
- ubuntu/libcairo2 1.14.6-1
- ubuntu/libcap-ng0 0.7.7-1
- ubuntu/libcap2-bin 1:2.24-12
- ubuntu/libcap2 1:2.24-12
- ubuntu/libcc1-0 5.4.0-6ubuntu1~16.04.11
- ubuntu/libcilkrts5 5.4.0-6ubuntu1~16.04.11
- ubuntu/libcomerr2 1.42.13-1ubuntu1
- ubuntu/libcroco3 0.6.11-1
- ubuntu/libcryptsetup4 2:1.6.6-5ubuntu2.1
- ubuntu/libcups2 2.1.3-4ubuntu0.7
- ubuntu/libcurl3-gnutls 7.47.0-1ubuntu2.11
- ubuntu/libcurl3 7.47.0-1ubuntu2.11
- ubuntu/libdatrie1 0.2.10-2
- ubuntu/libdb5.3 5.3.28-11ubuntu0.1
- ubuntu/libdbus-1-3 1.10.6-1ubuntu3.3
- ubuntu/libdbus-glib-1-2 0.106-1
- ubuntu/libdebconfclient0 0.198ubuntu1
- ubuntu/libdevmapper1.02.1 2:1.02.110-1ubuntu10
- ubuntu/libdns-export162 1:9.10.3.dfsg.P4-8ubuntu1.11
- ubuntu/libdpkg-perl 1.18.4ubuntu1.5
- ubuntu/libdrm-amdgpu1 2.4.91-2~16.04.1
- ubuntu/libdrm-common 2.4.91-2~16.04.1
- ubuntu/libdrm-intel1 2.4.91-2~16.04.1
- ubuntu/libdrm-nouveau2 2.4.91-2~16.04.1
- ubuntu/libdrm-radeon1 2.4.91-2~16.04.1
- ubuntu/libdrm2 2.4.91-2~16.04.1
- ubuntu/libedit2 3.1-20150325-1ubuntu2
- ubuntu/libelf1 0.165-3ubuntu1.1
- ubuntu/libencode-locale-perl 1.05-1
- ubuntu/libexpat1 2.1.0-7ubuntu0.16.04.3
- ubuntu/libfakeroot 1.20.2-1ubuntu1
- ubuntu/libfdisk1 2.27.1-6ubuntu3.6
- ubuntu/libffi6 3.2.1-4
- ubuntu/libfile-basedir-perl 0.07-1
- ubuntu/libfile-desktopentry-perl 0.22-1
- ubuntu/libfile-fcntllock-perl 0.22-3
- ubuntu/libfile-listing-perl 6.04-1
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- ubuntu/libfile-stripnondeterminism-perl 0.015-1
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- ubuntu/libfont-afm-perl 1.20-1
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- ubuntu/libfontenc1 1:1.1.3-1
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- ubuntu/libglapi-mesa 18.0.5-0ubuntu0~16.04.1
- ubuntu/libglib2.0-0 2.48.2-0ubuntu4.1
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- ubuntu/libgmp10 2:6.1.0 dfsg-2
- ubuntu/libgnutls30 3.4.10-4ubuntu1.4
- ubuntu/libgomp1 5.4.0-6ubuntu1~16.04.11
- ubuntu/libgpg-error0 1.21-2ubuntu1
- ubuntu/libgraphite2-3 1.3.10-0ubuntu0.16.04.1
- ubuntu/libgssapi-krb5-2 1.13.2 dfsg-5ubuntu2.1
- ubuntu/libgssapi3-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libgtk2.0-0 2.24.30-1ubuntu1.16.04.2
- ubuntu/libgtk2.0-bin 2.24.30-1ubuntu1.16.04.2
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- ubuntu/libharfbuzz0b 1.0.1-1ubuntu0.1
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- ubuntu/libhogweed4 3.2-1ubuntu0.16.04.1
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