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hoonbiolab/aa_tools : v2.3.1.1

Latest release: about 3 years ago - 12 downloads - 432 dependencies

JSON

Dependencies

fastmap 1.1.0
forcats 0.5.1
foreach 1.5.1
fs 1.5.0
gargle 1.2.0
generics 0.1.1
gert 1.4.2
getopt 1.20.3
ggplot2 3.3.5
gh 1.0.1
gh 1.3.0
git2r 0.25.2
gitcreds 0.1.1
glue 1.3.1
glue 1.5.0
googledrive 2.0.0
googlesheets4 1.0.0
grDevices 3.6.1
graphics 3.6.1
grid 3.6.1
gtable 0.3.0
haven 2.4.3
highr 0.9
hms 1.1.1
htmltools 0.5.2
httr 1.4.2
ids 1.0.1
igraph 1.2.8
ini 0.3.1
isoband 0.2.5
iterators 1.0.13
jquerylib 0.1.4
jsonlite 1.6
jsonlite 1.7.2
knitr 1.36
labeling 0.4.2
lattice 0.20-45
lifecycle 1.0.1
lubridate 1.8.0
magrittr 2.0.1
memoise 1.1.0
memoise 2.0.0
methods 3.6.1
mgcv 1.8-38
mime 0.12
mime 0.6
modelr 0.1.8
munsell 0.5.0
nat.utils 0.5.1
nlme 3.1-153
openssl 1.3
openssl 1.4.5
optparse 1.7.1
parallel 3.6.1
pillar 1.6.4
pkgbuild 1.2.0
pkgconfig 2.0.3
pkgload 1.0.2
pkgload 1.2.3
plyr 1.8.6
pracma 2.3.3
praise 1.0.0
prettyunits 1.1.1
processx 3.3.0
processx 3.5.2
progress 1.2.2
ps 1.3.0
ps 1.6.0
purrr 0.3.4
rappdirs 0.3.3
rcmdcheck 1.3.2
rcmdcheck 1.4.0
readr 2.0.2
readxl 1.3.1
rematch2 2.1.2
rematch 1.0.1
remotes 2.0.4
remotes 2.4.1
reprex 2.0.1
rlang 0.3.4
rlang 0.4.12
rmarkdown 2.11
roxygen2 7.1.2
rprojroot 2.0.2
rstudioapi 0.13
rversions 2.1.1
rvest 1.0.2
scales 1.1.1
selectr 0.4-2
sessioninfo 1.1.1
splines 3.6.1
stats4 3.6.1
stats 3.6.1
stringi 1.7.5
stringr 1.4.0
sys 3.4
tcltk 3.6.1
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.0
tibble 3.1.6
tidyr 1.1.4
tidyselect 1.1.1
tidyverse 1.3.1
tinytex 0.35
tools 3.6.1
translations 3.6.1
tzdb 0.2.0
usethis 1.5.0
usethis 2.1.3
utf8 1.2.2
utils 3.6.1
uuid 1.0-3
vctrs 0.3.8
viridisLite 0.4.0
vroom 1.5.5
waldo 0.3.1
whisker 0.4
withr 2.4.2
xfun 0.28
xml2 1.3.2
xopen 1.0.0
yaml 2.2.1
zip 2.2.0
zlibbioc 1.32.0
BiocGenerics 0.32.0
BiocManager 1.30.16
BiocVersion 3.10.1
DBI 1.1.1
GenomeInfoDb 1.22.1
GenomeInfoDbData 1.2.2
GenomicRanges 1.38.0
IRanges 2.20.2
MASS 7.3-54
Matrix 1.3-4
R6 2.4.0
R6 2.5.1
RColorBrewer 1.1-2
RCurl 1.98-1.5
Rcpp 1.0.7
S4Vectors 0.24.4
XVector 0.26.0
askpass 1.1
assertthat 0.2.1
backports 1.1.4
backports 1.3.0
base64enc 0.1-3
base 3.6.1
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.2
brew 1.0-6
brio 1.1.2
broom 0.7.10
cachem 1.0.6
callr 3.2.0
callr 3.7.0
ccube 1.0
cellranger 1.1.0
cli 1.1.0
cli 3.1.0
clipr 0.7.1
clisymbols 1.2.0
codetools 0.2-18
colorspace 2.0-2
commonmark 1.7
compiler 3.6.1
cpp11 0.4.1
crayon 1.3.4
crayon 1.4.2
credentials 1.3.1
curl 3.3
curl 4.3.2
data.table 1.14.2
datasets 3.6.1
dbplyr 2.1.1
desc 1.2.0
desc 1.4.0
devtools 2.0.2
devtools 2.4.2
diffobj 0.3.5
digest 0.6.18
digest 0.6.28
doParallel 1.0.16
dplyr 1.0.7
dtplyr 1.1.0
ellipsis 0.3.2
evaluate 0.14
fansi 0.5.0
farver 2.1.0

bash 5.0.3
java 11.0.1-internal 0-adhoc..src
python 2.7.16
python 2.7.18
python 3.9.5

US_export_policy:US_export_policy *
bio.overture:score-client 5.8.1
bio.overture:score-core 5.8.1
bio.overture:score-fs 5.8.1
ch.qos.logback:logback-classic 1.2.3
ch.qos.logback:logback-core 1.2.3
charsets:charsets *
com.amazonaws:aws-java-sdk-core 1.11.415
com.amazonaws:aws-java-sdk-kms 1.11.415
com.amazonaws:aws-java-sdk-s3 1.11.219
com.amazonaws:jmespath-java 1.11.415
com.beust:jcommander 1.35
com.fasterxml.jackson.core:jackson-annotations 2.9.0
com.fasterxml.jackson.core:jackson-core 2.9.9
com.fasterxml.jackson.core:jackson-databind 2.9.9
com.fasterxml.jackson.dataformat:jackson-dataformat-cbor 2.9.9
com.fasterxml.jackson.dataformat:jackson-dataformat-csv 2.10.0.pr1
com.fasterxml.jackson.dataformat:jackson-dataformat-yaml 2.9.9
com.github.jnr:jffi 1.2.9
com.github.jnr:jnr-constants 0.8.8
com.github.jnr:jnr-ffi 2.0.3
com.github.jnr:jnr-posix 3.0.17
com.github.jnr:jnr-x86asm 1.0.2
com.github.samtools:htsjdk 2.1.0
com.google.code.findbugs:annotations 3.0.1u2
com.google.code.findbugs:jsr305 3.0.1
com.google.guava:guava 19.0
com.microsoft.azure:azure-keyvault-core 1.2.4
com.microsoft.azure:azure-storage 8.6.6
com.sun.jersey:jersey-client 1.19.1
com.sun.jersey:jersey-core 1.19.1
com.sun.jersey:jersey-json 1.19.1
com.sun.jna:jna 4.5.2
com.sun:jaxb-impl 2.2.3-1
com.sun:jce 1.7.0_131
com.sun:sunec 1.7.0_131
com.sun:sunjce_provider 1.7.0_131
com.sun:sunpkcs11 1.7.0_131
commons-codec:commons-codec 1.11
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
dnsns:dnsns *
findbugsAnnotations:findbugsAnnotations 3.0.1u2
gnome-java-bridge:gnome-java-bridge *
jackson-core-asl:jackson-core-asl 1.9.2
jackson-jaxrs:jackson-jaxrs 1.9.2
jackson-mapper-asl:jackson-mapper-asl 1.9.2
jackson-xc:jackson-xc 1.9.2
javafs:javafs 0.1.0
javax.activation:javax.activation-api 1.2.0
javax.annotation:javax.annotation-api 1.3.2
javax.ws.rs:jsr311-api 1.1.1
javax.xml.bind:jaxb-api 2.3.1
jcip-annotations:jcip-annotations 1.0
jffi:jffi 1.2.9-native
jline:jline 2.14.6
joda-time:joda-time 2.10.2
jrt-fs:jrt-fs 11.0.1-internal
jsr305:jsr305 1.3.9
jsse:jsse 1.7.0_131
local_policy:local_policy *
localedata:localedata *
lombok:lombok 1.18.4
management-agent:management-agent *
mosek:mosek *
mosekmatlab:mosekmatlab *
ngs-java:ngs-java 1.2.2
ognl:ognl 3.1.12
org.apache.ant:ant-launcher 1.8.2
org.apache.ant:ant 1.8.2
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.8.1
org.apache.httpcomponents:httpclient 4.5.9
org.apache.httpcomponents:httpcore 4.4.11
org.apache.logging.log4j:log4j-api 2.11.2
org.apache.logging.log4j:log4j-to-slf4j 2.11.2
org.attoparser:attoparser 2.0.4.RELEASE
org.bouncycastle:bcmail-jdk15on 1.51
org.bouncycastle:bcpkix-jdk15on 1.51
org.bouncycastle:bcprov-jdk15on 1.51
org.codehaus.jettison:jettison 1.1
org.fusesource.hawtjni:hawtjni-runtime 1.8
org.fusesource.jansi:jansi-native 1.5
org.fusesource.jansi:jansi 1.11
org.icgc.dcc:dcc-common-core 4.0.9
org.javassist:javassist 3.20.0-GA
org.kohsuke:akuma 1.10
org.objectweb.asm.analysis:asm-analysis 5.0.3
org.objectweb.asm.commons:asm-commons 5.0.3
org.objectweb.asm.tree:asm-tree 5.0.3
org.objectweb.asm.util:asm-util 5.0.3
org.objectweb.asm:asm 5.0.3
org.slf4j:jcl-over-slf4j 1.7.26
org.slf4j:jul-to-slf4j 1.7.26
org.slf4j:slf4j-api 1.7.26
org.springframework.boot:spring-boot 2.1.6.RELEASE
org.springframework.retry:spring-retry 1.1.2.RELEASE
org.springframework.security.oauth:spring-security-oauth2 2.3.5.RELEASE
org.springframework.security:spring-security-config 5.1.5.RELEASE
org.springframework.security:spring-security-core 5.1.5.RELEASE
org.springframework:spring-beans 5.1.8.RELEASE
org.springframework:spring-core 5.1.8.RELEASE
org.springframework:spring-expression 5.1.8.RELEASE
org.springframework:spring-web 5.1.8.RELEASE
org.springframework:spring-webmvc 5.1.8.RELEASE
org.thymeleaf.extras:thymeleaf-extras-java8time 3.0.4.RELEASE
org.thymeleaf:thymeleaf-spring5 3.0.11.RELEASE
org.thymeleaf:thymeleaf 3.0.9.RELEASE
org.tukaani.xz:xz 1.5
org.unbescape:unbescape 1.1.5.RELEASE
org.xerial.snappy:snappy-java 1.0.3-rc3
org.yaml:snakeyaml 1.23
pulse-java:pulse-java *
resources:resources 1.7.0_131
rhino:rhino 1.7R4
rt:rt 1.7.0_131
software.amazon.ion:ion-java 1.0.2
spring-aop:spring-aop 5.1.8.RELEASE
spring-boot-autoconfigure:spring-boot-autoconfigure 2.1.6.RELEASE
spring-boot-starter-logging:spring-boot-starter-logging 2.1.6.RELEASE
spring-boot-starter-thymeleaf:spring-boot-starter-thymeleaf 2.0.3.RELEASE
spring-boot-starter:spring-boot-starter 2.1.6.RELEASE
spring-context:spring-context 5.1.8.RELEASE
spring-jcl:spring-jcl 5.1.8.RELEASE
spring-security-web:spring-security-web 5.1.5.RELEASE
zipfs:zipfs 1.7.0_131

Jinja2 2.11.2
MarkupSafe 2.0.1
Mosek 8.0.60
Pillow 6.2.1
PySocks 1.7.1
PyVCF 0.4.3
PyWavelets 1.0.3
PyYAML 6.0
SVclone 1.1.0
SocksiPy-branch 1.1
argcomplete 1.12.3
argparse 1.2.1
backports-abc 0.5
backports.functools-lru-cache 1.6.4
beautifulsoup4 4.9.3
boto 2.49.0
brotlipy 0.7.0
certifi 2020.6.20
certifi 2021.10.8
cffi 1.14.6
chardet 4.0.0
charset-normalizer 2.0.4
cloudpickle 1.2.2
conda-build 3.21.5
conda-package-handling 1.7.3
conda 4.10.3
crcmod 1.7
cryptography 35.0.0
cycler 0.10.0
cytoolz 0.10.1
dask 1.2.2
decorator 5.1.0
enum34 1.1.6
fasteners 0.16
filelock 3.0.12
flask 0.10.1
functools32 3.2.3-2
futures 3.3.0
gcs-oauth2-boto-plugin 3.0
glob2 0.7
google-apitools 0.5.32
google-reauth 0.1.1
gsutil 5.4
httplib2 0.20.2
idna 3.2
imageio 2.6.1
importlib-metadata 4.8.1
intervaltree 3.1.0
kiwisolver 1.1.0
libarchive-c 2.9
matplotlib 2.2.3
mercurial 4.8.2
mkl-fft 1.0.15
mkl-random 1.1.0
mkl-service 2.3.0
mock 2.0.0
monotonic 1.5
networkx 2.2
numpy 1.16.6
numpy 1.21.4
oauth2client 4.1.3
olefile 0.46
pandas 0.24.2
pandas 1.3.4
pbr 5.7.0
pip 19.3.1
pip 21.3.1
pkginfo 1.7.1
psutil 5.8.0
pyOpenSSL 21.0.0
pyasn1-modules 0.2.7
pyasn1 0.4.8
pycosat 0.6.3
pycparser 2.20
pyparsing 2.4.7
pyparsing 3.0.5
pysam 0.15.3
pysam 0.17.0
python-dateutil 2.8.2
pytz 2020.1
pytz 2021.3
pyu2f 0.1.5
requests 2.26.0
retry-decorator 1.1.1
rsa 3.1.4
rsa 4.7.2
ruamel-yaml-conda 0.15.100
scikit-image 0.14.2
scikit-learn 0.20.3
scipy 1.2.1
setuptools 44.0.0.post20200106
setuptools 58.0.4
simplejson 3.5.2
simplejson 3.6.5
singledispatch 3.7.0
six 1.16.0
sortedcontainers 2.4.0
soupsieve 2.0.1
subprocess32 3.5.4
toolz 0.10.0
tornado 5.1.1
tqdm 4.62.3
urllib3 1.26.7
wheel 0.37.0
wsgiref 0.1.2
zipp 3.6.0