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broadinstitute/pcawg_broad_wgs_variant_callers : mutect_2percent_floor
pcawg_broad_wgs_variant_callers
Ubuntu 14.04.5 LTS
Latest release: almost 7 years ago - 246 downloads - 865 dependencies
JSONDependencies
- BH 1.65.0-1
- BiocGenerics 0.24.0
- BiocInstaller 1.28.0
- BiocParallel 1.12.0
- Biostrings 2.46.0
- DNAcopy 1.52.0
- GenomeInfoDb 1.14.0
- GenomeInfoDbData 1.0.0
- GenomicRanges 1.30.1
- IRanges 2.12.0
- KernSmooth 2.23-15
- MASS 7.3-48
- Matrix 1.2-11
- RCurl 1.95-4.10
- Rsamtools 1.30.0
- S4Vectors 0.16.0
- XVector 0.18.0
- base 3.4.3
- bitops 1.0-6
- boot 1.3-20
- class 7.3-14
- cluster 2.0.6
- codetools 0.2-15
- compiler 3.4.3
- data.table 1.10.4-3
- datasets 3.4.3
- foreign 0.8-69
- futile.logger 1.4.3
- futile.options 1.0.0
- getopt 1.20.1
- grDevices 3.4.3
- graphics 3.4.3
- grid 3.4.3
- lambda.r 1.2
- lattice 0.20-35
- methods 3.4.3
- mgcv 1.8-23
- nlme 3.1-131
- nnet 7.3-12
- optparse 1.4.4
- parallel 3.4.3
- rpart 4.1-12
- snow 0.4-2
- spatial 7.3-10
- splines 3.4.3
- stats4 3.4.3
- stats 3.4.3
- survival 2.41-3
- tcltk 3.4.3
- tools 3.4.3
- translations 3.4.3
- utils 3.4.3
- zlibbioc 1.24.0
- ubuntu/adduser 3.113 nmu3ubuntu3
- ubuntu/apt-utils 1.0.1ubuntu2.17
- ubuntu/apt 1.0.1ubuntu2.17
- ubuntu/autoconf 2.69-6
- ubuntu/automake 1:1.14.1-2ubuntu1
- ubuntu/autotools-dev 20130810.1
- ubuntu/base-files 7.2ubuntu5.5
- ubuntu/base-passwd 3.5.33
- ubuntu/bash 4.3-7ubuntu1.7
- ubuntu/bc 1.06.95-8ubuntu1
- ubuntu/binutils 2.24-5ubuntu14.2
- ubuntu/bsdmainutils 9.0.5ubuntu1
- ubuntu/bsdutils 1:2.20.1-5.1ubuntu20.9
- ubuntu/build-essential 11.6ubuntu6
- ubuntu/busybox-initramfs 1:1.21.0-1ubuntu1
- ubuntu/byobu 5.77-0ubuntu1.2
- ubuntu/bzip2 1.0.6-5
- ubuntu/ca-certificates 20170717~14.04.1
- ubuntu/cdbs 0.4.122ubuntu2
- ubuntu/comerr-dev 2.1-1.42.9-3ubuntu1.3
- ubuntu/console-setup 1.70ubuntu8
- ubuntu/coreutils 8.21-1ubuntu5.4
- ubuntu/cpio 2.11 dfsg-1ubuntu1.2
- ubuntu/cpp-4.8 4.8.5-2ubuntu1~14.04.1
- ubuntu/cpp 4:4.8.2-1ubuntu6
- ubuntu/cron 3.0pl1-124ubuntu2
- ubuntu/curl 7.35.0-1ubuntu2.13
- ubuntu/dash 0.5.7-4ubuntu1
- ubuntu/debconf-i18n 1.5.51ubuntu2
- ubuntu/debconf 1.5.51ubuntu2
- ubuntu/debhelper 9.20131227ubuntu1
- ubuntu/debianutils 4.4
- ubuntu/dh-apparmor 2.10.95-0ubuntu2.6~14.04.1
- ubuntu/dh-python 1.20140128-1ubuntu8.2
- ubuntu/dh-translations 121
- ubuntu/diffutils 1:3.3-1
- ubuntu/dmsetup 2:1.02.77-6ubuntu2
- ubuntu/dpkg-dev 1.17.5ubuntu5.7
- ubuntu/dpkg 1.17.5ubuntu5.7
- ubuntu/dstat 0.7.2-3build1
- ubuntu/e2fslibs 1.42.9-3ubuntu1.3
- ubuntu/e2fsprogs 1.42.9-3ubuntu1.3
- ubuntu/eject 2.1.5 deb1 cvs20081104-13.1ubuntu0.14.04.1
- ubuntu/fakeroot 1.20-3ubuntu2
- ubuntu/file 1:5.14-2ubuntu3.3
- ubuntu/findutils 4.4.2-7
- ubuntu/fontconfig-config 2.11.0-0ubuntu4.2
- ubuntu/fontconfig 2.11.0-0ubuntu4.2
- ubuntu/fonts-dejavu-core 2.34-1ubuntu1
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- ubuntu/gcc-4.9-base 4.9.4-2ubuntu1~14.04.1
- ubuntu/gcc-6-base 6.3.0-18ubuntu2~14.04
- ubuntu/gcc-7-base 7.2.0-1ubuntu1~14.04
- ubuntu/gcc 4:4.8.2-1ubuntu6
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- ubuntu/gfortran 4:4.8.2-1ubuntu6
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- ubuntu/git-man 1:1.9.1-1ubuntu0.7
- ubuntu/git 1:1.9.1-1ubuntu0.7
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- ubuntu/gpgv 1.4.16-1ubuntu2.4
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- ubuntu/hostname 3.15ubuntu1
- ubuntu/htop 1.0.2-3
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- ubuntu/init-system-helpers 1.14ubuntu1
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- ubuntu/initramfs-tools 0.103ubuntu4.10
- ubuntu/initscripts 2.88dsf-41ubuntu6.3
- ubuntu/insserv 1.14.0-5ubuntu2
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- ubuntu/iso-codes 3.52-1
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- ubuntu/libauthen-sasl-perl 2.1500-1
- ubuntu/libblas-dev 1.2.20110419-7
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- ubuntu/libc6 2.19-0ubuntu6.14
- ubuntu/libcairo2 1.13.0~20140204-0ubuntu1.1
- ubuntu/libcap2-bin 1:2.24-0ubuntu2
- ubuntu/libcap2 1:2.24-0ubuntu2
- ubuntu/libcgmanager0 0.24-0ubuntu7.5
- ubuntu/libcloog-isl4 0.18.4-1~14.04
- ubuntu/libcomerr2 1.42.9-3ubuntu1.3
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- ubuntu/libdevmapper1.02.1 2:1.02.77-6ubuntu2
- ubuntu/libdpkg-perl 1.17.5ubuntu5.7
- ubuntu/libdrm-intel1 2.4.67-1ubuntu0.14.04.2
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