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liutiantian/lrgasp_event2_metrics : 0.2.0

Ubuntu 20.04.5 LTS

Latest release: over 1 year ago - 15 downloads - 282 dependencies

JSON

Dependencies

BH 1.78.0-0
BiocGenerics 0.44.0
BiocParallel 1.32.0
Biostrings 2.66.0
GenomeInfoDb 1.34.1
GenomeInfoDbData 1.2.9
GenomicRanges 1.50.0
IRanges 2.32.0
MASS 7.3-58.1
Matrix 1.5-3
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
Rcpp 1.0.9
Rhtslib 2.0.0
Rsamtools 2.14.0
S4Vectors 0.36.0
XVector 0.38.0
askpass 1.1
base64enc 0.1-3
base 4.2.2
bitops 1.0-7
bslib 0.4.2
cachem 1.0.6
callr 3.7.3
cli 3.4.1
codetools 0.2-18
colorspace 2.0-3
compiler 4.2.2
cpp11 0.4.3
crayon 1.5.2
curl 4.3.3
data.table 1.14.6
datasets 4.2.2
digest 0.6.31
dplyr 1.0.10
ellipsis 0.3.2
evaluate 0.19
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
formatR 1.12
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
gdtools 0.2.4
generics 0.1.3
ggplot2 3.4.0
glue 1.6.2
grDevices 4.2.2
graphics 4.2.2
grid 4.2.2
gtable 0.3.1
highr 0.9
htmltools 0.5.4
httr 1.4.4
isoband 0.2.6
jquerylib 0.1.4
jsonlite 1.8.4
kableExtra 1.3.4
knitr 1.41
labeling 0.4.2
lambda.r 1.2.4
lattice 0.20-45
lifecycle 1.0.3
magrittr 2.0.3
memoise 2.0.1
methods 4.2.2
mgcv 1.8-41
mime 0.12
munsell 0.5.0
nlme 3.1-161
openssl 2.0.5
parallel 4.2.2
pillar 1.8.1
pkgconfig 2.0.3
processx 3.8.0
ps 1.7.2
rappdirs 0.3.3
rlang 1.0.6
rmarkdown 2.19
rstudioapi 0.14
rvest 1.0.3
sass 0.4.4
scales 1.2.1
selectr 0.4-2
snow 0.4-4
splines 4.2.2
stats4 4.2.2
stats 4.2.2
stringi 1.7.8
stringr 1.5.0
svglite 2.1.0
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 3.1.8
tidyselect 1.2.0
tinytex 0.43
tools 4.2.2
translations 4.2.2
utf8 1.2.2
utils 4.2.2
vctrs 0.5.1
viridisLite 0.4.1
webshot 0.5.4
withr 2.5.0
xfun 0.35
xml2 1.3.3
yaml 2.3.6
zlibbioc 1.44.0

ubuntu/adduser 3.118ubuntu2
ubuntu/apt 2.0.9
ubuntu/base-files 11ubuntu5.6
ubuntu/base-passwd 3.5.47
ubuntu/bash 5.0-6ubuntu1.2
ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
ubuntu/bzip2 1.0.8-2
ubuntu/ca-certificates 20211016ubuntu0.20.04.1
ubuntu/coreutils 8.30-3ubuntu2
ubuntu/dash 0.5.10.2-6
ubuntu/debconf 1.5.73
ubuntu/debianutils 4.9.1
ubuntu/diffutils 1:3.7-3
ubuntu/dpkg 1.19.7ubuntu3.2
ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
ubuntu/fdisk 2.34-0.1ubuntu9.3
ubuntu/findutils 4.7.0-1ubuntu1
ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
ubuntu/git-man 1:2.25.1-1ubuntu3.6
ubuntu/git 1:2.25.1-1ubuntu3.6
ubuntu/gpgv 2.2.19-3ubuntu2.2
ubuntu/grep 3.4-1
ubuntu/gzip 1.10-0ubuntu4.1
ubuntu/hostname 3.23
ubuntu/init-system-helpers 1.57
ubuntu/libacl1 2.2.53-6
ubuntu/libapt-pkg6.0 2.0.9
ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.2
ubuntu/libattr1 1:2.4.48-5
ubuntu/libaudit-common 1:2.8.5-2ubuntu6
ubuntu/libaudit1 1:2.8.5-2ubuntu6
ubuntu/libblkid1 2.34-0.1ubuntu9.3
ubuntu/libbrotli1 1.0.7-6ubuntu0.1
ubuntu/libbz2-1.0 1.0.8-2
ubuntu/libc-bin 2.31-0ubuntu9.9
ubuntu/libc6 2.31-0ubuntu9.9
ubuntu/libcap-ng0 0.7.9-2.1build1
ubuntu/libcom-err2 1.45.5-2ubuntu1.1
ubuntu/libcrypt1 1:4.4.10-10ubuntu4
ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.14
ubuntu/libcurl4-openssl-dev 7.68.0-1ubuntu2.14
ubuntu/libcurl4 7.68.0-1ubuntu2.14
ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
ubuntu/libdebconfclient0 0.251ubuntu1
ubuntu/liberror-perl 0.17029-1
ubuntu/libexpat1 2.2.9-1ubuntu0.6
ubuntu/libext2fs2 1.45.5-2ubuntu1.1
ubuntu/libfdisk1 2.34-0.1ubuntu9.3
ubuntu/libffi7 3.3-4
ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
ubuntu/libgdbm-compat4 1.18.1-5
ubuntu/libgdbm6 1.18.1-5
ubuntu/libgmp10 2:6.2.0 dfsg-4ubuntu0.1
ubuntu/libgnutls30 3.6.13-2ubuntu1.7
ubuntu/libgpg-error0 1.37-1
ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.1
ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.2
ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.2
ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.2
ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1.2
ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1.2
ubuntu/libidn2-0 2.2.0-2
ubuntu/libk5crypto3 1.17-6ubuntu4.1
ubuntu/libkeyutils1 1.6-6ubuntu1.1
ubuntu/libkrb5-26-heimdal 7.7.0 dfsg-1ubuntu1.2
ubuntu/libkrb5-3 1.17-6ubuntu4.1
ubuntu/libkrb5support0 1.17-6ubuntu4.1
ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.9
ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.9
ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
ubuntu/liblzma5 5.2.4-1ubuntu1.1
ubuntu/libmount1 2.34-0.1ubuntu9.3
ubuntu/libncurses6 6.2-0ubuntu2
ubuntu/libncursesw6 6.2-0ubuntu2
ubuntu/libnettle7 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libnghttp2-14 1.40.0-1build1
ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.3
ubuntu/libpam-modules 1.3.1-5ubuntu4.3
ubuntu/libpam-runtime 1.3.1-5ubuntu4.3
ubuntu/libpam0g 1.3.1-5ubuntu4.3
ubuntu/libpcre2-8-0 10.34-7ubuntu0.1
ubuntu/libpcre3 2:8.39-12ubuntu0.1
ubuntu/libperl5.30 5.30.0-9ubuntu0.3
ubuntu/libprocps8 2:3.3.16-1ubuntu2.3
ubuntu/libpsl5 0.21.0-1ubuntu1
ubuntu/libroken18-heimdal 7.7.0 dfsg-1ubuntu1.2
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build1
ubuntu/libsasl2-2 2.1.27 dfsg-2ubuntu0.1
ubuntu/libsasl2-modules-db 2.1.27 dfsg-2ubuntu0.1
ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
ubuntu/libselinux1 3.0-1build2
ubuntu/libsemanage-common 3.0-1build2
ubuntu/libsemanage1 3.0-1build2
ubuntu/libsepol1 3.0-1ubuntu0.1
ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
ubuntu/libsqlite3-0 3.31.1-4ubuntu0.5
ubuntu/libss2 1.45.5-2ubuntu1.1
ubuntu/libssh-4 0.9.3-2ubuntu2.2
ubuntu/libssl1.1 1.1.1f-1ubuntu2.16
ubuntu/libstdc 6 10.3.0-1ubuntu1~20.04
ubuntu/libsystemd0 245.4-4ubuntu3.19
ubuntu/libtasn1-6 4.16.0-2
ubuntu/libtinfo6 6.2-0ubuntu2
ubuntu/libudev1 245.4-4ubuntu3.19
ubuntu/libunistring2 0.9.10-2
ubuntu/libuuid1 2.34-0.1ubuntu9.3
ubuntu/libwind0-heimdal 7.7.0 dfsg-1ubuntu1.2
ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
ubuntu/login 1:4.8.1-1ubuntu5.20.04.4
ubuntu/logsave 1.45.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu2
ubuntu/mawk 1.3.4.20200120-2
ubuntu/mount 2.34-0.1ubuntu9.3
ubuntu/ncurses-base 6.2-0ubuntu2
ubuntu/ncurses-bin 6.2-0ubuntu2
ubuntu/openssl 1.1.1f-1ubuntu2.16
ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.4
ubuntu/perl-base 5.30.0-9ubuntu0.3
ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.3
ubuntu/perl 5.30.0-9ubuntu0.3
ubuntu/procps 2:3.3.16-1ubuntu2.3
ubuntu/sed 4.7-1
ubuntu/sensible-utils 0.0.12 nmu1
ubuntu/sysvinit-utils 2.96-2.1ubuntu1
ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.2
ubuntu/tini 0.18.0-1
ubuntu/ubuntu-keyring 2020.02.11.4
ubuntu/util-linux 2.34-0.1ubuntu9.3
ubuntu/wget 1.20.3-1ubuntu2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5

bootswatch 3.4.1
bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 4.6.0
bootswatch 5.2.2
casperjs 1.1.0-beta5
js 1.0.0

java 17.0.3-internal 0-adhoc..src
python 3.7.12

edirect (devel)
github.com/fatih/color v1.12.0
github.com/gedex/inflector v0.0.0-20170307190818-16278e9db813
github.com/klauspost/cpuid v1.3.1
github.com/mattn/go-colorable v0.1.8
github.com/mattn/go-isatty v0.0.12
github.com/pbnjay/memory v0.0.0-20210728143218-7b4eea64cf58
github.com/rainycape/unidecode v0.0.0-20150907023854-cb7f23ec59be
github.com/surgebase/porter2 v0.0.0-20150829210152-56e4718818e8
golang.org/x/sys v0.0.0-20200223170610-d5e6a3e2c0ae
golang.org/x/text v0.3.7

commons-beanutils:commons-beanutils 1.8.3
commons-collections:commons-collections 3.2.1
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
jrt-fs:jrt-fs 17.0.3-internal
net.sf.ezmorph:ezmorph 1.0.6
seppJsonMerger:seppJsonMerger *

BUSCO 5.4.4
Cython 0.29.32
DendroPy 4.5.2
PySocks 1.7.1
PyYAML 6.0
argcomplete 2.0.0
attrs 22.1.0
biopython 1.79
brotlipy 0.7.0
bx-python 0.9.0
certifi 2022.9.24
cffi 1.15.0
cffi 1.15.1
charset-normalizer 2.1.1
colorama 0.4.6
conda-package-handling 1.9.0
conda 22.9.0
cryptography 38.0.3
greenlet 0.4.13
hpy 0.0.3
idna 3.4
importlib-metadata 4.11.4
importlib-resources 5.10.1
jsonschema 4.17.3
libmambapy 1.0.0
mamba 1.0.0
numpy 1.21.6
pandas 1.3.5
pip 22.3.1
pkgutil_resolve_name 1.3.10
psutil 5.9.3
pyOpenSSL 22.1.0
pycosat 0.6.4
pycparser 2.21
pyrsistent 0.18.1
pysam 0.20.0
python-dateutil 2.8.2
python-lzo 1.14
pytz 2022.7
readline 6.2.4.1
requests 2.28.1
ruamel-yaml-conda 0.15.80
scipy 1.7.3
sepp 4.5.1
setuptools 59.8.0
setuptools 65.5.1
six 1.16.0
toml 0.10.2
toolz 0.12.0
tqdm 4.64.1
typing_extensions 4.4.0
urllib3 1.26.11
wheel 0.38.4
xmltodict 0.13.0
yq 3.1.0
zipp 3.11.0