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biocontainers/ipo : develop
A Tool for automated Optimization of XCMS Parameters
Latest release: over 6 years ago - 1,002 downloads - 366 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- BH 1.65.0-1
- Biobase 2.38.0
- BiocGenerics 0.24.0
- BiocInstaller 1.28.0
- BiocParallel 1.12.0
- CAMERA 1.34.0
- Formula 1.2-3
- Hmisc 4.1-1
- IPO 1.4.1
- IRanges 2.12.0
- KernSmooth 2.23-15
- MALDIquant 1.17
- MASS 7.3-47
- MSnbase 2.4.1
- MassSpecWavelet 1.44.0
- Matrix 1.2-11
- ProtGenerics 1.10.0
- R6 2.2.2
- RANN 2.5.1
- RBGL 1.54.0
- RColorBrewer 1.1-2
- Rcpp 0.12.17
- Rhdf5lib 1.3.1
- S4Vectors 0.16.0
- XML 3.98-1.9
- acepack 1.4.1
- affy 1.56.0
- affyio 1.48.0
- assertthat 0.2.0
- backports 1.1.2
- base64enc 0.1-3
- base 3.4.4
- batch 1.1-5
- boot 1.3-20
- checkmate 1.8.5
- class 7.3-14
- cli 1.0.0
- cluster 2.0.6
- codetools 0.2-15
- colorspace 1.3-2
- compiler 3.4.4
- crayon 1.3.4
- curl 3.2
- data.table 1.11.2
- datasets 3.4.4
- devtools 1.13.5
- dichromat 2.0-0
- digest 0.6.14
- doParallel 1.0.11
- estimability 1.3
- evaluate 0.10.1
- foreach 1.4.4
- foreign 0.8-69
- futile.logger 1.4.3
- futile.options 1.0.0
- ggplot2 2.2.1
- git2r 0.21.0
- grDevices 3.4.4
- graph 1.56.0
- graphics 3.4.4
- grid 3.4.4
- gridExtra 2.3
- gtable 0.2.0
- highr 0.6
- htmlTable 1.11.2
- htmltools 0.3.6
- htmlwidgets 1.2
- httr 1.3.1
- igraph 1.2.1
- impute 1.52.0
- iterators 1.0.9
- jsonlite 1.5
- knitr 1.20
- labeling 0.3
- lambda.r 1.2
- lattice 0.20-35
- latticeExtra 0.6-28
- lazyeval 0.2.1
- limma 3.34.5
- magrittr 1.5
- markdown 0.8
- memoise 1.1.0
- methods 3.4.4
- mgcv 1.8-22
- mime 0.5
- multtest 2.34.0
- munsell 0.4.3
- mzID 1.16.0
- mzR 2.15.1
- nlme 3.1-131
- nnet 7.3-12
- openssl 1.0.1
- parallel 3.4.4
- pcaMethods 1.70.0
- pillar 1.1.0
- pkgconfig 2.0.1
- plyr 1.8.4
- preprocessCore 1.40.0
- reshape2 1.4.3
- rlang 0.1.6
- rpart 4.1-11
- rsm 2.9
- rstudioapi 0.7
- scales 0.5.0
- snow 0.4-2
- spatial 7.3-11
- splines 3.4.4
- stats4 3.4.4
- stats 3.4.4
- stringi 1.1.6
- stringr 1.2.0
- survival 2.41-3
- tcltk 3.4.4
- testRcppClass 0.1
- testRcppModule 0.1
- testRcppPackage 0.1.0
- tibble 1.4.1
- tools 3.4.4
- translations 3.4.4
- utf8 1.1.3
- utils 3.4.4
- viridis 0.5.1
- viridisLite 0.3.0
- vsn 3.46.0
- waveslim 1.7.5
- whisker 0.3-2
- withr 2.1.2
- xcms 3.0.0
- yaml 2.1.19
- zlibbioc 1.24.0
- ubuntu/adduser 3.113 nmu3ubuntu4
- ubuntu/apt-transport-https 1.2.24
- ubuntu/apt 1.2.24
- ubuntu/base-files 9.4ubuntu4.5
- ubuntu/base-passwd 3.5.39
- ubuntu/bash 4.3-14ubuntu1.2
- ubuntu/bsdmainutils 9.0.6ubuntu3
- ubuntu/bsdutils 1:2.27.1-6ubuntu3.3
- ubuntu/ca-certificates 20170717~16.04.1
- ubuntu/coreutils 8.25-2ubuntu3~16.04
- ubuntu/dash 0.5.8-2.1ubuntu2
- ubuntu/debconf 1.5.58ubuntu1
- ubuntu/debianutils 4.7
- ubuntu/diffutils 1:3.3-3
- ubuntu/dpkg 1.18.4ubuntu1.2
- ubuntu/e2fslibs 1.42.13-1ubuntu1
- ubuntu/e2fsprogs 1.42.13-1ubuntu1
- ubuntu/findutils 4.6.0 git 20160126-2
- ubuntu/fontconfig-config 2.11.94-0ubuntu1.1
- ubuntu/fontconfig 2.11.94-0ubuntu1.1
- ubuntu/fonts-dejavu-core 2.35-1
- ubuntu/gcc-5-base 5.4.0-6ubuntu1~16.04.9
- ubuntu/gcc-6-base 6.0.1-0ubuntu1
- ubuntu/gnupg 1.4.20-1ubuntu3.1
- ubuntu/gpgv 1.4.20-1ubuntu3.1
- ubuntu/grep 2.25-1~16.04.1
- ubuntu/gzip 1.6-4ubuntu1
- ubuntu/hdf5-helpers 1.8.16 docs-4ubuntu1
- ubuntu/hostname 3.16ubuntu2
- ubuntu/icu-devtools 55.1-7ubuntu0.4
- ubuntu/init-system-helpers 1.29ubuntu4
- ubuntu/init 1.29ubuntu4
- ubuntu/initscripts 2.88dsf-59.3ubuntu2
- ubuntu/insserv 1.14.0-5ubuntu3
- ubuntu/libacl1 2.2.52-3
- ubuntu/libaec-dev 0.3.2-1
- ubuntu/libaec0 0.3.2-1
- ubuntu/libapparmor1 2.10.95-0ubuntu2.7
- ubuntu/libapt-pkg5.0 1.2.24
- ubuntu/libasan2 5.4.0-6ubuntu1~16.04.9
- ubuntu/libasn1-8-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libatomic1 5.4.0-6ubuntu1~16.04.9
- ubuntu/libattr1 1:2.4.47-2
- ubuntu/libaudit-common 1:2.4.5-1ubuntu2
- ubuntu/libaudit1 1:2.4.5-1ubuntu2
- ubuntu/libblas-common 3.6.0-2ubuntu2
- ubuntu/libblas3 3.6.0-2ubuntu2
- ubuntu/libblkid1 2.27.1-6ubuntu3.3
- ubuntu/libbz2-1.0 1.0.6-8
- ubuntu/libc-bin 2.23-0ubuntu9
- ubuntu/libc-dev-bin 2.23-0ubuntu10
- ubuntu/libc6-dev 2.23-0ubuntu10
- ubuntu/libc6 2.23-0ubuntu10
- ubuntu/libcairo2 1.14.6-1
- ubuntu/libcap2-bin 1:2.24-12
- ubuntu/libcap2 1:2.24-12
- ubuntu/libcilkrts5 5.4.0-6ubuntu1~16.04.9
- ubuntu/libcomerr2 1.42.13-1ubuntu1
- ubuntu/libcryptsetup4 2:1.6.6-5ubuntu2.1
- ubuntu/libcurl3-gnutls 7.47.0-1ubuntu2.8
- ubuntu/libcurl3 7.47.0-1ubuntu2.8
- ubuntu/libcurl4-gnutls-dev 7.47.0-1ubuntu2.8
- ubuntu/libdatrie1 0.2.10-2
- ubuntu/libdb5.3 5.3.28-11
- ubuntu/libdebconfclient0 0.198ubuntu1
- ubuntu/libdevmapper1.02.1 2:1.02.110-1ubuntu10
- ubuntu/libexpat1 2.1.0-7ubuntu0.16.04.3
- ubuntu/libfdisk1 2.27.1-6ubuntu3.3
- ubuntu/libffi6 3.2.1-4
- ubuntu/libfontconfig1 2.11.94-0ubuntu1.1
- ubuntu/libfreetype6 2.6.1-0.1ubuntu2.3
- ubuntu/libgcc-5-dev 5.4.0-6ubuntu1~16.04.9
- ubuntu/libgcc1 1:6.0.1-0ubuntu1
- ubuntu/libgcrypt20 1.6.5-2ubuntu0.4
- ubuntu/libgfortran3 5.4.0-6ubuntu1~16.04.9
- ubuntu/libglib2.0-0 2.48.2-0ubuntu1
- ubuntu/libgmp10 2:6.1.0 dfsg-2
- ubuntu/libgnutls30 3.4.10-4ubuntu1.4
- ubuntu/libgomp1 5.4.0-6ubuntu1~16.04.9
- ubuntu/libgpg-error0 1.21-2ubuntu1
- ubuntu/libgraphite2-3 1.3.10-0ubuntu0.16.04.1
- ubuntu/libgssapi-krb5-2 1.13.2 dfsg-5ubuntu2
- ubuntu/libgssapi3-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libharfbuzz0b 1.0.1-1ubuntu0.1
- ubuntu/libhcrypto4-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libhdf5-10 1.8.16 docs-4ubuntu1
- ubuntu/libhdf5-cpp-11 1.8.16 docs-4ubuntu1
- ubuntu/libhdf5-dev 1.8.16 docs-4ubuntu1
- ubuntu/libheimbase1-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libheimntlm0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libhogweed4 3.2-1ubuntu0.16.04.1
- ubuntu/libhx509-5-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libice6 2:1.0.9-1
- ubuntu/libicu-dev 55.1-7ubuntu0.4
- ubuntu/libicu55 55.1-7ubuntu0.4
- ubuntu/libidn11 1.32-3ubuntu1.2
- ubuntu/libitm1 5.4.0-6ubuntu1~16.04.9
- ubuntu/libjbig0 2.1-3.1
- ubuntu/libjpeg-dev 8c-2ubuntu8
- ubuntu/libjpeg-turbo8-dev 1.4.2-0ubuntu3
- ubuntu/libjpeg-turbo8 1.4.2-0ubuntu3
- ubuntu/libjpeg8-dev 8c-2ubuntu8
- ubuntu/libjpeg8 8c-2ubuntu8
- ubuntu/libk5crypto3 1.13.2 dfsg-5ubuntu2
- ubuntu/libkeyutils1 1.5.9-8ubuntu1
- ubuntu/libkmod2 22-1ubuntu5
- ubuntu/libkrb5-26-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libkrb5-3 1.13.2 dfsg-5ubuntu2
- ubuntu/libkrb5support0 1.13.2 dfsg-5ubuntu2
- ubuntu/liblapack3 3.6.0-2ubuntu2
- ubuntu/libldap-2.4-2 2.4.42 dfsg-2ubuntu3.2
- ubuntu/liblsan0 5.4.0-6ubuntu1~16.04.9
- ubuntu/liblz4-1 0.0~r131-2ubuntu2
- ubuntu/liblzma5 5.1.1alpha 20120614-2ubuntu2
- ubuntu/libmount1 2.27.1-6ubuntu3.3
- ubuntu/libmpx0 5.4.0-6ubuntu1~16.04.9
- ubuntu/libncurses5 6.0 20160213-1ubuntu1
- ubuntu/libncursesw5 6.0 20160213-1ubuntu1
- ubuntu/libnetcdf-dev 1:4.4.0-2
- ubuntu/libnetcdf11 1:4.4.0-2
- ubuntu/libnettle6 3.2-1ubuntu0.16.04.1
- ubuntu/libp11-kit0 0.23.2-5~ubuntu16.04.1
- ubuntu/libpam-modules-bin 1.1.8-3.2ubuntu2
- ubuntu/libpam-modules 1.1.8-3.2ubuntu2
- ubuntu/libpam-runtime 1.1.8-3.2ubuntu2
- ubuntu/libpam0g 1.1.8-3.2ubuntu2
- ubuntu/libpango-1.0-0 1.38.1-1
- ubuntu/libpangocairo-1.0-0 1.38.1-1
- ubuntu/libpangoft2-1.0-0 1.38.1-1
- ubuntu/libpaper-utils 1.1.24 nmu4ubuntu1
- ubuntu/libpaper1 1.1.24 nmu4ubuntu1
- ubuntu/libpcre3 2:8.38-3.1
- ubuntu/libpixman-1-0 0.33.6-1
- ubuntu/libpng12-0 1.2.54-1ubuntu1
- ubuntu/libprocps4 2:3.3.10-4ubuntu2.3
- ubuntu/libquadmath0 5.4.0-6ubuntu1~16.04.9
- ubuntu/libreadline6 6.3-8ubuntu2
- ubuntu/libroken18-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/librtmp1 2.4 20151223.gitfa8646d-1ubuntu0.1
- ubuntu/libsasl2-2 2.1.26.dfsg1-14build1
- ubuntu/libsasl2-modules-db 2.1.26.dfsg1-14build1
- ubuntu/libseccomp2 2.2.3-3ubuntu3
- ubuntu/libselinux1 2.4-3build2
- ubuntu/libsemanage-common 2.3-1build3
- ubuntu/libsemanage1 2.3-1build3
- ubuntu/libsepol1 2.4-2
- ubuntu/libsm6 2:1.2.2-1
- ubuntu/libsmartcols1 2.27.1-6ubuntu3.3
- ubuntu/libsqlite3-0 3.11.0-1ubuntu1
- ubuntu/libss2 1.42.13-1ubuntu1
- ubuntu/libssl1.0.0 1.0.2g-1ubuntu4.12
- ubuntu/libstdc -5-dev 5.4.0-6ubuntu1~16.04.9
- ubuntu/libstdc 6 5.4.0-6ubuntu1~16.04.9
- ubuntu/libsystemd0 229-4ubuntu19
- ubuntu/libsz2 0.3.2-1
- ubuntu/libtasn1-6 4.7-3ubuntu0.16.04.2
- ubuntu/libtcl8.6 8.6.5 dfsg-2
- ubuntu/libthai-data 0.1.24-2
- ubuntu/libthai0 0.1.24-2
- ubuntu/libtiff5 4.0.6-1ubuntu0.2
- ubuntu/libtinfo5 6.0 20160213-1ubuntu1
- ubuntu/libtk8.6 8.6.5-1
- ubuntu/libtsan0 5.4.0-6ubuntu1~16.04.9
- ubuntu/libubsan0 5.4.0-6ubuntu1~16.04.9
- ubuntu/libudev1 229-4ubuntu19
- ubuntu/libusb-0.1-4 2:0.1.12-28
- ubuntu/libustr-1.0-1 1.0.4-5
- ubuntu/libuuid1 2.27.1-6ubuntu3.3
- ubuntu/libwind0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libx11-6 2:1.6.3-1ubuntu2
- ubuntu/libx11-data 2:1.6.3-1ubuntu2
- ubuntu/libxau6 1:1.0.8-1
- ubuntu/libxcb-render0 1.11.1-1ubuntu1
- ubuntu/libxcb-shm0 1.11.1-1ubuntu1
- ubuntu/libxcb1 1.11.1-1ubuntu1
- ubuntu/libxdmcp6 1:1.1.2-1.1
- ubuntu/libxext6 2:1.3.3-1
- ubuntu/libxft2 2.3.2-1
- ubuntu/libxml2-dev 2.9.3 dfsg1-1ubuntu0.5
- ubuntu/libxml2-utils 2.9.3 dfsg1-1ubuntu0.5
- ubuntu/libxml2 2.9.3 dfsg1-1ubuntu0.5
- ubuntu/libxrender1 1:0.9.9-0ubuntu1
- ubuntu/libxss1 1:1.2.2-1
- ubuntu/libxt6 1:1.1.5-0ubuntu1
- ubuntu/linux-libc-dev 4.4.0-109.132
- ubuntu/login 1:4.2-3.1ubuntu5.3
- ubuntu/lsb-base 9.20160110ubuntu0.2
- ubuntu/makedev 2.3.1-93ubuntu2~ubuntu16.04.1
- ubuntu/mawk 1.3.3-17ubuntu2
- ubuntu/mount 2.27.1-6ubuntu3.3
- ubuntu/multiarch-support 2.23-0ubuntu9
- ubuntu/ncurses-base 6.0 20160213-1ubuntu1
- ubuntu/ncurses-bin 6.0 20160213-1ubuntu1
- ubuntu/netcdf-bin 1:4.4.0-2
- ubuntu/openssl 1.0.2g-1ubuntu4.9
- ubuntu/passwd 1:4.2-3.1ubuntu5.3
- ubuntu/perl-base 5.22.1-9ubuntu0.3
- ubuntu/procps 2:3.3.10-4ubuntu2.3
- ubuntu/r-base-core 3.4.4-1xenial0
- ubuntu/r-base 3.4.2-2xenial2
- ubuntu/r-cran-boot 1.3-20-1xenial0
- ubuntu/r-cran-class 7.3-14-2xenial0
- ubuntu/r-cran-cluster 2.0.6-2xenial0
- ubuntu/r-cran-codetools 0.2-15-1cran1xenial0
- ubuntu/r-cran-foreign 0.8.69-1xenial0
- ubuntu/r-cran-kernsmooth 2.23-15-3xenial0
- ubuntu/r-cran-lattice 0.20-35-1cran1xenial0
- ubuntu/r-cran-mass 7.3-47-1xenial0
- ubuntu/r-cran-matrix 1.2-11-1xenial0
- ubuntu/r-cran-mgcv 1.8-22-1cran1xenial0
- ubuntu/r-cran-nlme 3.1.131-3xenial0
- ubuntu/r-cran-nnet 7.3-12-2xenial0
- ubuntu/r-cran-rpart 4.1-11-1xenial0
- ubuntu/r-cran-spatial 7.3-11-1xenial0
- ubuntu/r-cran-survival 2.41-3-2xenial0
- ubuntu/r-recommended 3.4.2-2xenial2
- ubuntu/readline-common 6.3-8ubuntu2
- ubuntu/sed 4.2.2-7
- ubuntu/sensible-utils 0.0.9
- ubuntu/systemd-sysv 229-4ubuntu19
- ubuntu/systemd 229-4ubuntu19
- ubuntu/sysv-rc 2.88dsf-59.3ubuntu2
- ubuntu/sysvinit-utils 2.88dsf-59.3ubuntu2
- ubuntu/tar 1.28-2.1ubuntu0.1
- ubuntu/tzdata 2017c-0ubuntu0.16.04
- ubuntu/ubuntu-keyring 2012.05.19
- ubuntu/ucf 3.0036
- ubuntu/unzip 6.0-20ubuntu1
- ubuntu/util-linux 2.27.1-6ubuntu3.3
- ubuntu/wget 1.17.1-1ubuntu1.4
- ubuntu/x11-common 1:7.7 13ubuntu3
- ubuntu/xdg-utils 1.1.1-1ubuntu1.16.04.1
- ubuntu/zip 3.0-11
- ubuntu/zlib1g-dev 1:1.2.8.dfsg-2ubuntu4.1
- ubuntu/zlib1g 1:1.2.8.dfsg-2ubuntu4.1