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biocontainers/bioconductor-deseq2 : v1.14.1-1-deb_cv1

Latest release: over 6 years ago - 155 downloads - 523 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.36.1
Biobase 2.34.0
BiocGenerics 0.20.0
BiocParallel 1.8.1
DBI 0.5-1
DESeq2 1.14.1
Formula 1.2-1
GenomeInfoDb 1.10.3
GenomicRanges 1.26.2
Hmisc 4.0-2
IRanges 2.8.1
KernSmooth 2.23-15
MASS 7.3-45
Matrix 1.2-7.1
RColorBrewer 1.1-2
RCurl 1.95-4.8
RSQLite 1.1-2
Rcpp 0.12.9
S4Vectors 0.12.1
SummarizedExperiment 1.4.0
XML 3.98-1.5
XVector 0.14.0
acepack 1.4.1
annotate 1.52.1
assertthat 0.1
base64enc 0.1-3
base 3.3.3
bitops 1.0-6
boot 1.3-18
chron 2.3-49
class 7.3-14
cluster 2.0.5
codetools 0.2-15
colorspace 1.3-2
compiler 3.3.3
crayon 1.3.2
data.table 1.10.0
datasets 3.3.3
dichromat 2.0-0
digest 0.6.11
evaluate 0.10
foreign 0.8-67
futile.logger 1.4.3
futile.options 1.0.0
genefilter 1.56.0
geneplotter 1.52.0
ggplot2 2.2.1
grDevices 3.3.3
graphics 3.3.3
grid 3.3.3
gridExtra 2.2.1
gtable 0.2.0
highr 0.6
htmlTable 1.7
htmltools 0.3.5
knitr 1.15.1
labeling 0.3
lambda.r 1.1.9
lattice 0.20-34
latticeExtra 0.6-28
lazyeval 0.2.0
littler 0.3.1
magrittr 1.5
markdown 0.7.7
memoise 1.0.0
methods 3.3.3
mgcv 1.8-16
mime 0.5
munsell 0.4.3
nlme 3.1-129
nnet 7.3-12
org.testing.db 0.1
parallel 3.3.3
pkgKitten 0.1.4
plyr 1.8.4
reshape2 1.4.2
rpart 4.1-10
scales 0.4.1
snow 0.4-2
spatial 7.3-11
splines 3.3.3
stats4 3.3.3
stats 3.3.3
stringi 1.1.2
stringr 1.1.0
survival 2.40-1
tcltk 3.3.3
testRcppClass 0.1
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 1.2
tools 3.3.3
translations 3.3.3
utils 3.3.3
viridis 0.3.4
xtable 1.8-2
yaml 2.1.14

debian/adduser 3.115
debian/apt 1.4.6
debian/autotools-dev 20161112.1
debian/base-files 9.9
debian/base-passwd 3.5.43
debian/bash 4.4-5
debian/binutils 2.28-5
debian/bsdutils 1:2.29.2-1
debian/build-essential 12.3
debian/bzip2-doc 1.0.6-8.1
debian/bzip2 1.0.6-8.1
debian/ca-certificates 20161130 nmu1
debian/cdbs 0.4.150
debian/coreutils 8.26-3
debian/cpp-6 6.3.0-18 deb9u1
debian/cpp 4:6.3.0-4
debian/dash 0.5.8-2.4
debian/dbus 1.10.26-0 deb9u1
debian/debconf 1.5.61
debian/debian-archive-keyring 2017.5
debian/debianutils 4.8.1.1
debian/diffutils 1:3.5-3
debian/dirmngr 2.1.18-8~deb9u1
debian/dpkg-dev 1.18.24
debian/dpkg 1.18.24
debian/e2fslibs 1.43.4-2
debian/e2fsprogs 1.43.4-2
debian/fakeroot 1.21-3.1
debian/findutils 4.6.0 git 20161106-2
debian/fontconfig-config 2.11.0-6.7
debian/fontconfig 2.11.0-6.7 b1
debian/fonts-dejavu-core 2.37-1
debian/fonts-mathjax 2.7.0-2
debian/fuse 2.9.7-1
debian/g -6 6.3.0-18 deb9u1
debian/g 4:6.3.0-4
debian/gcc-6-base 6.3.0-18 deb9u1
debian/gcc-6 6.3.0-18 deb9u1
debian/gcc 4:6.3.0-4
debian/gfortran-6 6.3.0-18 deb9u1
debian/gfortran 4:6.3.0-4
debian/gnupg-agent 2.1.18-8~deb9u1
debian/gnupg-l10n 2.1.18-8~deb9u1
debian/gnupg 2.1.18-8~deb9u1
debian/gpgv 2.1.18-6
debian/grep 2.27-2
debian/gzip 1.6-5 b1
debian/hostname 3.18 b1
debian/icu-devtools 57.1-6 deb9u2
debian/inetutils-ping 2:1.9.4-2 b1
debian/init-system-helpers 1.48
debian/iproute2 4.9.0-1
debian/javascript-common 11
debian/krb5-locales 1.15-1 deb9u1
debian/libacl1 2.2.52-3 b1
debian/libalgorithm-diff-perl 1.19.03-1
debian/libalgorithm-diff-xs-perl 0.04-4 b2
debian/libalgorithm-merge-perl 0.08-3
debian/libapparmor1 2.11.0-3 deb9u2
debian/libapt-pkg5.0 1.4.6
debian/libasan3 6.3.0-18 deb9u1
debian/libassuan0 2.4.3-2
debian/libatomic1 6.3.0-18 deb9u1
debian/libattr1 1:2.4.47-2 b2
debian/libaudit-common 1:2.6.7-2
debian/libaudit1 1:2.6.7-2
debian/libauthen-sasl-perl 2.1600-1
debian/libblas-common 3.7.0-2
debian/libblas-dev 3.7.0-2
debian/libblas3 3.7.0-2
debian/libblkid1 2.29.2-1
debian/libbsd0 0.8.3-1
debian/libbz2-1.0 1.0.6-8.1
debian/libbz2-dev 1.0.6-8.1
debian/libc-bin 2.24-11 deb9u1
debian/libc-dev-bin 2.24-11 deb9u3
debian/libc6-dev 2.24-11 deb9u3
debian/libc6 2.24-11 deb9u3
debian/libcairo2 1.14.8-1
debian/libcap-ng0 0.7.7-3 b1
debian/libcc1-0 6.3.0-18 deb9u1
debian/libcilkrts5 6.3.0-18 deb9u1
debian/libcomerr2 1.43.4-2
debian/libcurl3 7.52.1-5 deb9u6
debian/libdatrie1 0.2.10-4 b1
debian/libdb5.3 5.3.28-12 b1
debian/libdbus-1-3 1.10.26-0 deb9u1
debian/libdebconfclient0 0.227
debian/libdpkg-perl 1.18.24
debian/libdrm-amdgpu1 2.4.74-1
debian/libdrm-intel1 2.4.74-1
debian/libdrm-nouveau2 2.4.74-1
debian/libdrm-radeon1 2.4.74-1
debian/libdrm2 2.4.74-1
debian/libedit2 3.1-20160903-3
debian/libelf1 0.168-1
debian/libencode-locale-perl 1.05-1
debian/libexpat1 2.2.0-2 deb9u1
debian/libfakeroot 1.21-3.1
debian/libfdisk1 2.29.2-1
debian/libffi6 3.2.1-6
debian/libfile-basedir-perl 0.07-1
debian/libfile-desktopentry-perl 0.22-1
debian/libfile-fcntllock-perl 0.22-3 b2
debian/libfile-listing-perl 6.04-1
debian/libfile-mimeinfo-perl 0.27-1
debian/libfont-afm-perl 1.20-2
debian/libfontconfig1 2.11.0-6.7 b1
debian/libfontenc1 1:1.1.3-1 b2
debian/libfreetype6 2.6.3-3.2
debian/libfuse2 2.9.7-1
debian/libgcc-6-dev 6.3.0-18 deb9u1
debian/libgcc1 1:6.3.0-18 deb9u1
debian/libgcrypt20 1.7.6-2
debian/libgdbm3 1.8.3-14
debian/libgfortran-6-dev 6.3.0-18 deb9u1
debian/libgfortran3 6.3.0-18 deb9u1
debian/libgl1-mesa-dri 13.0.6-1 b2
debian/libgl1-mesa-glx 13.0.6-1 b2
debian/libglapi-mesa 13.0.6-1 b2
debian/libglib2.0-0 2.50.3-2
debian/libglib2.0-data 2.50.3-2
debian/libgmp10 2:6.1.2 dfsg-1
debian/libgnutls30 3.5.8-5 deb9u3
debian/libgomp1 6.3.0-18 deb9u1
debian/libgpg-error0 1.26-2
debian/libgpm2 1.20.4-6.2 b1
debian/libgraphite2-3 1.3.10-1
debian/libgssapi-krb5-2 1.15-1 deb9u1
debian/libharfbuzz0b 1.4.2-1
debian/libhogweed4 3.3-1 b2
debian/libhtml-form-perl 6.03-1
debian/libhtml-format-perl 2.12-1
debian/libhtml-parser-perl 3.72-3
debian/libhtml-tagset-perl 3.20-3
debian/libhtml-tree-perl 5.03-2
debian/libhttp-cookies-perl 6.01-1
debian/libhttp-daemon-perl 6.01-1
debian/libhttp-date-perl 6.02-1
debian/libhttp-message-perl 6.11-1
debian/libhttp-negotiate-perl 6.00-2
debian/libice6 2:1.0.9-2
debian/libicu-dev 57.1-6 deb9u2
debian/libicu57 57.1-6 deb9u2
debian/libidn11 1.33-1
debian/libidn2-0 0.16-1 deb9u1
debian/libio-html-perl 1.001-1
debian/libio-socket-ssl-perl 2.044-1
debian/libipc-system-simple-perl 1.25-3
debian/libisl15 0.18-1
debian/libitm1 6.3.0-18 deb9u1
debian/libjbig0 2.1-3.1 b2
debian/libjpeg-dev 1:1.5.1-2
debian/libjpeg62-turbo-dev 1:1.5.1-2
debian/libjpeg62-turbo 1:1.5.1-2
debian/libjs-highlight.js 8.2 ds-5
debian/libjs-jquery 3.1.1-2
debian/libjs-mathjax 2.7.0-2
debian/libk5crypto3 1.15-1 deb9u1
debian/libkeyutils1 1.5.9-9
debian/libkrb5-3 1.15-1 deb9u1
debian/libkrb5support0 1.15-1 deb9u1
debian/libksba8 1.3.5-2
debian/liblapack-dev 3.7.0-2
debian/liblapack3 3.7.0-2
debian/libldap-2.4-2 2.4.44 dfsg-5 deb9u1
debian/libldap-common 2.4.44 dfsg-5 deb9u1
debian/libllvm3.9 1:3.9.1-9
debian/liblocale-gettext-perl 1.07-3 b1
debian/liblsan0 6.3.0-18 deb9u1
debian/liblwp-mediatypes-perl 6.02-1
debian/liblwp-protocol-https-perl 6.06-2
debian/liblz4-1 0.0~r131-2 b1
debian/liblzma-dev 5.2.2-1.2 b1
debian/liblzma5 5.2.2-1.2 b1
debian/libmailtools-perl 2.18-1
debian/libmnl0 1.0.4-2
debian/libmount1 2.29.2-1
debian/libmpc3 1.0.3-1 b2
debian/libmpfr4 3.1.5-1
debian/libmpx2 6.3.0-18 deb9u1
debian/libncurses5-dev 6.0 20161126-1 deb9u2
debian/libncurses5 6.0 20161126-1 deb9u2
debian/libncursesw5 6.0 20161126-1 deb9u2
debian/libnet-dbus-perl 1.1.0-4 b1
debian/libnet-http-perl 6.12-1
debian/libnet-smtp-ssl-perl 1.04-1
debian/libnet-ssleay-perl 1.80-1
debian/libnettle6 3.3-1 b2
debian/libnghttp2-14 1.18.1-1
debian/libnpth0 1.3-1
debian/libp11-kit0 0.23.3-2
debian/libpam-modules-bin 1.1.8-3.6
debian/libpam-modules 1.1.8-3.6
debian/libpam-runtime 1.1.8-3.6
debian/libpam0g 1.1.8-3.6
debian/libpango-1.0-0 1.40.5-1
debian/libpangocairo-1.0-0 1.40.5-1
debian/libpangoft2-1.0-0 1.40.5-1
debian/libpaper-utils 1.1.24 nmu5
debian/libpaper1 1.1.24 nmu5
debian/libpciaccess0 0.13.4-1 b2
debian/libpcre16-3 2:8.39-3
debian/libpcre3-dev 2:8.39-3
debian/libpcre32-3 2:8.39-3
debian/libpcre3 2:8.39-3
debian/libpcrecpp0v5 2:8.39-3
debian/libperl5.24 5.24.1-3 deb9u3
debian/libpixman-1-0 0.34.0-1
debian/libpng-dev 1.6.28-1
debian/libpng-tools 1.6.28-1
debian/libpng16-16 1.6.28-1
debian/libpsl5 0.17.0-3
debian/libquadmath0 6.3.0-18 deb9u1
debian/libreadline-dev 7.0-3
debian/libreadline7 7.0-3
debian/librtmp1 2.4 20151223.gitfa8646d.1-1 b1
debian/libsasl2-2 2.1.27~101-g0780600 dfsg-3
debian/libsasl2-modules-db 2.1.27~101-g0780600 dfsg-3
debian/libsasl2-modules 2.1.27~101-g0780600 dfsg-3
debian/libselinux1 2.6-3 b1
debian/libsemanage-common 2.6-2
debian/libsemanage1 2.6-2
debian/libsensors4 1:3.4.0-4
debian/libsepol1 2.6-2
debian/libsm6 2:1.2.2-1 b3
debian/libsmartcols1 2.29.2-1
debian/libsqlite3-0 3.16.2-5 deb9u1
debian/libss2 1.43.4-2
debian/libssh2-1 1.7.0-1
debian/libssl1.0.2 1.0.2l-2 deb9u3
debian/libssl1.1 1.1.0f-3 deb9u2
debian/libstdc -6-dev 6.3.0-18 deb9u1
debian/libstdc 6 6.3.0-18 deb9u1
debian/libsystemd0 232-25
debian/libtasn1-6 4.10-1.1 deb9u1
debian/libtcl8.6 8.6.6 dfsg-1 b1
debian/libtext-iconv-perl 1.7-5 b4
debian/libthai-data 0.1.26-1
debian/libthai0 0.1.26-1
debian/libtie-ixhash-perl 1.23-2
debian/libtiff5 4.0.8-2 deb9u2
debian/libtimedate-perl 2.3000-2
debian/libtinfo-dev 6.0 20161126-1 deb9u2
debian/libtinfo5 6.0 20161126-1 deb9u2
debian/libtk8.6 8.6.6-1 b1
debian/libtsan0 6.3.0-18 deb9u1
debian/libtxc-dxtn-s2tc 1.0 git20151227-2
debian/libubsan0 6.3.0-18 deb9u1
debian/libudev1 232-25
debian/libunistring0 0.9.6 really0.9.3-0.1
debian/liburi-perl 1.71-1
debian/libustr-1.0-1 1.0.4-6
debian/libuuid1 2.29.2-1
debian/libwww-perl 6.15-1
debian/libwww-robotrules-perl 6.01-1
debian/libx11-6 2:1.6.4-3
debian/libx11-data 2:1.6.4-3
debian/libx11-protocol-perl 0.56-7
debian/libx11-xcb1 2:1.6.4-3
debian/libxau6 1:1.0.8-1
debian/libxaw7 2:1.0.13-1 b2
debian/libxcb-dri2-0 1.12-1
debian/libxcb-dri3-0 1.12-1
debian/libxcb-glx0 1.12-1
debian/libxcb-present0 1.12-1
debian/libxcb-render0 1.12-1
debian/libxcb-shape0 1.12-1
debian/libxcb-shm0 1.12-1
debian/libxcb-sync1 1.12-1
debian/libxcb1 1.12-1
debian/libxcomposite1 1:0.4.4-2
debian/libxcursor1 1:1.1.14-1 deb9u1
debian/libxdamage1 1:1.1.4-2 b3
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1 b2
debian/libxfixes3 1:5.0.3-1
debian/libxft2 2.3.2-1 b2
debian/libxi6 2:1.7.9-1
debian/libxinerama1 2:1.1.3-1 b3
debian/libxml-parser-perl 2.44-2 b1
debian/libxml-twig-perl 1:3.50-1
debian/libxml-xpathengine-perl 0.13-1
debian/libxml2 2.9.4 dfsg1-2.2 deb9u2
debian/libxmu6 2:1.1.2-2
debian/libxmuu1 2:1.1.2-2
debian/libxpm4 1:3.5.12-1
debian/libxrandr2 2:1.5.1-1
debian/libxrender1 1:0.9.10-1
debian/libxshmfence1 1.2-1 b2
debian/libxss1 1:1.2.2-1
debian/libxt6 1:1.1.5-1
debian/libxtst6 2:1.2.3-1
debian/libxv1 2:1.0.11-1
debian/libxxf86dga1 2:1.1.4-1 b3
debian/libxxf86vm1 1:1.1.4-1 b2
debian/linux-libc-dev 4.9.88-1 deb9u1
debian/littler 0.3.1-1
debian/login 1:4.4-4.1
debian/lsb-base 9.20161125
debian/make 4.1-9.1
debian/manpages-dev 4.10-2
debian/manpages 4.10-2
debian/mawk 1.3.3-17 b3
debian/mount 2.29.2-1
debian/multiarch-support 2.24-11 deb9u1
debian/ncurses-base 6.0 20161126-1
debian/ncurses-bin 6.0 20161126-1
debian/netbase 5.4
debian/openssl 1.1.0f-3 deb9u2
debian/passwd 1:4.4-4.1
debian/patch 2.7.5-1 b2
debian/perl-base 5.24.1-3 deb9u3
debian/perl-modules-5.24 5.24.1-3 deb9u3
debian/perl-openssl-defaults 3
debian/perl 5.24.1-3 deb9u3
debian/pinentry-curses 1.0.0-2
debian/pkg-config 0.29-4 b1
debian/publicsuffix 20180218.2049-0 deb9u1
debian/r-base-core 3.3.3-1
debian/r-base-dev 3.3.3-1
debian/r-bioc-annotate 1.52.1 dfsg-1
debian/r-bioc-annotationdbi 1.36.1-2
debian/r-bioc-biobase 2.34.0-1
debian/r-bioc-biocgenerics 0.20.0-1
debian/r-bioc-biocparallel 1.8.1-1
debian/r-bioc-deseq2 1.14.1-1
debian/r-bioc-genefilter 1.56.0-1
debian/r-bioc-geneplotter 1.52.0-2
debian/r-bioc-genomeinfodb 1.10.3-1
debian/r-bioc-genomicranges 1.26.2-1 b1
debian/r-bioc-iranges 2.8.1-1 b1
debian/r-bioc-s4vectors 0.12.1-2 b1
debian/r-bioc-summarizedexperiment 1.4.0-2
debian/r-bioc-xvector 0.14.0-1 b1
debian/r-cran-acepack 1.4.1-1
debian/r-cran-assertthat 0.1-1
debian/r-cran-base64enc 0.1-3-1
debian/r-cran-bitops 1.0-6-1
debian/r-cran-boot 1.3-18-2
debian/r-cran-chron 2.3-49-1
debian/r-cran-class 7.3-14-1
debian/r-cran-cluster 2.0.5-1
debian/r-cran-codetools 0.2-15-1
debian/r-cran-colorspace 1.3-2-1
debian/r-cran-crayon 1.3.2-1
debian/r-cran-data.table 1.10.0-1
debian/r-cran-dbi 0.5-1-1
debian/r-cran-dichromat 2.0.0-3
debian/r-cran-digest 0.6.11-1
debian/r-cran-evaluate 0.10-1
debian/r-cran-foreign 0.8.67-1
debian/r-cran-formula 1.2-1-1
debian/r-cran-futile.logger 1.4.3-1
debian/r-cran-futile.options 1.0.0-2
debian/r-cran-ggplot2 2.2.1-2
debian/r-cran-gridextra 2.2.1-1
debian/r-cran-gtable 0.2.0-1
debian/r-cran-highr 0.6-1
debian/r-cran-hmisc 4.0-2-1
debian/r-cran-htmltable 1.7-2
debian/r-cran-htmltools 0.3.5-2
debian/r-cran-kernsmooth 2.23-15-2
debian/r-cran-knitr 1.15.1-1
debian/r-cran-labeling 0.3-1
debian/r-cran-lambda.r 1.1.9-1
debian/r-cran-lattice 0.20-34-1
debian/r-cran-latticeextra 0.6-28-2
debian/r-cran-lazyeval 0.2.0-1
debian/r-cran-littler 0.3.1-1
debian/r-cran-magrittr 1.5-3
debian/r-cran-markdown 0.7.7-1
debian/r-cran-mass 7.3-45-1
debian/r-cran-matrix 1.2-7.1-1
debian/r-cran-memoise 1.0.0-1
debian/r-cran-mgcv 1.8-16-1
debian/r-cran-mime 0.5-1
debian/r-cran-munsell 0.4.3-1
debian/r-cran-nlme 3.1.129-1
debian/r-cran-nnet 7.3-12-1
debian/r-cran-pkgkitten 0.1.4-1
debian/r-cran-plyr 1.8.4-1
debian/r-cran-rcolorbrewer 1.1-2-1
debian/r-cran-rcpp 0.12.9-1
debian/r-cran-rcurl 1.95-4.8-2
debian/r-cran-reshape2 1.4.2-1
debian/r-cran-rpart 4.1-10-2
debian/r-cran-rsqlite 1.1-2-1
debian/r-cran-scales 0.4.1-1
debian/r-cran-snow 1:0.4.2-1
debian/r-cran-spatial 7.3-11-1
debian/r-cran-stringi 1.1.2-1
debian/r-cran-stringr 1.1.0-1
debian/r-cran-survival 2.40-1-1
debian/r-cran-tibble 1.2-1
debian/r-cran-viridis 0.3.4-1
debian/r-cran-xml 3.98-1.5-1
debian/r-cran-xtable 1:1.8-2-1
debian/r-cran-yaml 2.1.14-1
debian/r-doc-html 3.3.3-1
debian/r-recommended 3.3.3-1
debian/readline-common 7.0-3
debian/rename 0.20-4
debian/sed 4.4-1
debian/sensible-utils 0.0.9
debian/sgml-base 1.29
debian/shared-mime-info 1.8-1
debian/sysvinit-utils 2.88dsf-59.9
debian/tar 1.29b-1.1
debian/tzdata 2017b-1
debian/ucf 3.0036
debian/unzip 6.0-21
debian/util-linux 2.29.2-1
debian/x11-common 1:7.7 19
debian/x11-utils 7.7 3 b1
debian/x11-xserver-utils 7.7 7 b1
debian/xauth 1:1.0.9-1 b2
debian/xdg-user-dirs 0.15-2 b1
debian/xdg-utils 1.1.1-1 deb9u1
debian/xml-core 0.17
debian/xz-utils 5.2.2-1.2 b1
debian/zip 3.0-11 b1
debian/zlib1g-dev 1:1.2.8.dfsg-5
debian/zlib1g 1:1.2.8.dfsg-5

bash 4.4.12