Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

nfcore/eager : 2.4.6

A Docker image for the nf-core/eager pipeline.

Debian GNU/Linux 10 (buster)

Latest release: 7 months ago - 46,224 downloads - 738 dependencies

JSON

Dependencies

debian/adduser 3.118
debian/apt 1.8.2.1
debian/base-files 10.3 deb10u6
debian/base-passwd 3.5.46
debian/bash 5.0-4
debian/bsdutils 1:2.33.1-0.1
debian/bzip2 1.0.6-9.2~deb10u1
debian/ca-certificates 20200601~deb10u1
debian/coreutils 8.30-3
debian/dash 0.5.10.2-5
debian/debconf 1.5.71
debian/debian-archive-keyring 2019.1
debian/debianutils 4.8.6.1
debian/diffutils 1:3.7-3
debian/dpkg 1.19.7
debian/e2fsprogs 1.44.5-1 deb10u3
debian/fdisk 2.33.1-0.1
debian/file 1:5.35-4 deb10u1
debian/findutils 4.6.0 git 20190209-2
debian/gcc-8-base 8.3.0-6
debian/git-man 1:2.20.1-2 deb10u3
debian/git 1:2.20.1-2 deb10u3
debian/gpgv 2.2.12-1 deb10u1
debian/grep 3.3-1
debian/gzip 1.9-3
debian/hostname 3.21
debian/init-system-helpers 1.56 nmu1
debian/krb5-locales 1.17-3 deb10u1
debian/less 487-0.1 b1
debian/libacl1 2.2.53-4
debian/libapr1 1.6.5-1 b1
debian/libaprutil1 1.6.1-4
debian/libapt-pkg5.0 1.8.2.1
debian/libattr1 1:2.4.48-4
debian/libaudit-common 1:2.8.4-3
debian/libaudit1 1:2.8.4-3
debian/libblkid1 2.33.1-0.1
debian/libbsd0 0.9.1-2
debian/libbz2-1.0 1.0.6-9.2~deb10u1
debian/libc-bin 2.28-10
debian/libc6 2.28-10
debian/libcap-ng0 0.7.9-2
debian/libcom-err2 1.44.5-1 deb10u3
debian/libcurl3-gnutls 7.64.0-4 deb10u1
debian/libdb5.3 5.3.28 dfsg1-0.5
debian/libdebconfclient0 0.249
debian/libedit2 3.1-20181209-1
debian/liberror-perl 0.17027-2
debian/libexpat1 2.2.6-2 deb10u1
debian/libext2fs2 1.44.5-1 deb10u3
debian/libfdisk1 2.33.1-0.1
debian/libffi6 3.2.1-9
debian/libgcc1 1:8.3.0-6
debian/libgcrypt20 1.8.4-5
debian/libgdbm-compat4 1.18.1-4
debian/libgdbm6 1.18.1-4
debian/libglib2.0-0 2.58.3-2 deb10u2
debian/libglib2.0-data 2.58.3-2 deb10u2
debian/libgmp10 2:6.1.2 dfsg-4
debian/libgnutls30 3.6.7-4 deb10u5
debian/libgpg-error0 1.35-1
debian/libgpm2 1.20.7-5
debian/libgssapi-krb5-2 1.17-3 deb10u1
debian/libhogweed4 3.4.1-1
debian/libice6 2:1.0.9-2
debian/libicu63 63.1-6 deb10u1
debian/libidn2-0 2.0.5-1 deb10u1
debian/libk5crypto3 1.17-3 deb10u1
debian/libkeyutils1 1.6-6
debian/libkrb5-3 1.17-3 deb10u1
debian/libkrb5support0 1.17-3 deb10u1
debian/libldap-2.4-2 2.4.47 dfsg-3 deb10u4
debian/libldap-common 2.4.47 dfsg-3 deb10u4
debian/liblz4-1 1.8.3-1
debian/liblzma5 5.2.4-1
debian/libmagic-mgc 1:5.35-4 deb10u1
debian/libmagic1 1:5.35-4 deb10u1
debian/libmount1 2.33.1-0.1
debian/libncurses6 6.1 20181013-2 deb10u2
debian/libncursesw6 6.1 20181013-2 deb10u2
debian/libnettle6 3.4.1-1
debian/libnghttp2-14 1.36.0-2 deb10u1
debian/libp11-kit0 0.23.15-2
debian/libpam-modules-bin 1.3.1-5
debian/libpam-modules 1.3.1-5
debian/libpam-runtime 1.3.1-5
debian/libpam0g 1.3.1-5
debian/libpcre2-8-0 10.32-5
debian/libpcre3 2:8.39-12
debian/libperl5.28 5.28.1-6 deb10u1
debian/libprocps7 2:3.3.15-2
debian/libpsl5 0.20.2-2
debian/libpython-stdlib 2.7.16-1
debian/libpython2-stdlib 2.7.16-1
debian/libpython2.7-minimal 2.7.16-2 deb10u1
debian/libpython2.7-stdlib 2.7.16-2 deb10u1
debian/libreadline7 7.0-5
debian/librtmp1 2.4 20151223.gitfa8646d.1-2
debian/libsasl2-2 2.1.27 dfsg-1 deb10u1
debian/libsasl2-modules-db 2.1.27 dfsg-1 deb10u1
debian/libsasl2-modules 2.1.27 dfsg-1 deb10u1
debian/libseccomp2 2.3.3-4
debian/libselinux1 2.8-1 b1
debian/libsemanage-common 2.8-2
debian/libsemanage1 2.8-2
debian/libsepol1 2.8-1
debian/libserf-1-1 1.3.9-7 b10
debian/libsm6 2:1.2.3-1
debian/libsmartcols1 2.33.1-0.1
debian/libsqlite3-0 3.27.2-3 deb10u1
debian/libss2 1.44.5-1 deb10u3
debian/libssh2-1 1.8.0-2.1
debian/libssl1.1 1.1.1d-0 deb10u3
debian/libstdc 6 8.3.0-6
debian/libsvn1 1.10.4-1 deb10u1
debian/libsystemd0 241-7~deb10u4
debian/libtasn1-6 4.13-3
debian/libtinfo6 6.1 20181013-2 deb10u2
debian/libudev1 241-7~deb10u4
debian/libunistring2 0.9.10-1
debian/libutf8proc2 2.3.0-1
debian/libuuid1 2.33.1-0.1
debian/libx11-6 2:1.6.7-1 deb10u1
debian/libx11-data 2:1.6.7-1 deb10u1
debian/libxau6 1:1.0.8-1 b2
debian/libxcb1 1.13.1-2
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1 b2
debian/libxml2 2.9.4 dfsg1-7 deb10u1
debian/libxmuu1 2:1.1.2-2 b3
debian/libxrender1 1:0.9.10-1
debian/libzstd1 1.3.8 dfsg-3
debian/login 1:4.5-1.1
debian/lsb-base 10.2019051400
debian/mawk 1.3.3-17 b3
debian/mercurial-common 4.8.2-1 deb10u1
debian/mercurial 4.8.2-1 deb10u1
debian/mime-support 3.62
debian/mount 2.33.1-0.1
debian/ncurses-base 6.1 20181013-2 deb10u2
debian/ncurses-bin 6.1 20181013-2 deb10u2
debian/netbase 5.6
debian/openssh-client 1:7.9p1-10 deb10u2
debian/openssl 1.1.1d-0 deb10u3
debian/passwd 1:4.5-1.1
debian/patch 2.7.6-3 deb10u1
debian/perl-base 5.28.1-6 deb10u1
debian/perl-modules-5.28 5.28.1-6 deb10u1
debian/perl 5.28.1-6 deb10u1
debian/procps 2:3.3.15-2
debian/psmisc 23.2-1
debian/publicsuffix 20190415.1030-1
debian/python-minimal 2.7.16-1
debian/python2-minimal 2.7.16-1
debian/python2.7-minimal 2.7.16-2 deb10u1
debian/python2.7 2.7.16-2 deb10u1
debian/python2 2.7.16-1
debian/python 2.7.16-1
debian/readline-common 7.0-5
debian/sed 4.7-1
debian/sensible-utils 0.0.12
debian/shared-mime-info 1.10-1
debian/subversion 1.10.4-1 deb10u1
debian/sysvinit-utils 2.93-8
debian/tar 1.30 dfsg-6
debian/tzdata 2020d-0 deb10u1
debian/ucf 3.0038 nmu1
debian/util-linux 2.33.1-0.1
debian/wget 1.20.1-1.1
debian/x11-common 1:7.7 19
debian/xauth 1:1.0.10-1
debian/xdg-user-dirs 0.17-2
debian/xz-utils 5.2.4-1
debian/zlib1g 1:1.2.11.dfsg-1

com.sun:sunec 1.8.0_144
com.sun.jersey:jersey-servlet 1.19
AdapterRemovalFixPrefix:AdapterRemovalFixPrefix 0.0.5
DamageProfiler:DamageProfiler 0.4.9
DeDup:DeDup 0.12.8
Jama:Jama 1.0.3
com.sun:jce 1.8.0_144
MTNucRatioCalculator:MTNucRatioCalculator 0.7
MaltExtract1:MaltExtract1 5
MaltExtract1:MaltExtract1 7
MultiVCFAnalyzer:MultiVCFAnalyzer 0.85.2
US_export_policy:US_export_policy *
VCF2Genome:VCF2Genome 0.91
VectorGraphics2D:VectorGraphics2D 0.13
args4j:args4j 2.33
charsets:charsets *
cisd-jhdf5:cisd-jhdf5 *
cldrdata:cldrdata *
colt:colt *
com.beust:jcommander 1.27
com.carrotsearch:hppc 0.7.2
com.clearspring.analytics:stream 2.7.0
com.esotericsoftware:kryo-shaded 4.0.2
com.esotericsoftware:kryo 4.0.0
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.11.3
com.fasterxml.jackson.core:jackson-annotations 2.9.8
com.fasterxml.jackson.core:jackson-core 2.1.3
com.fasterxml.jackson.core:jackson-core 2.9.9
com.fasterxml.jackson.core:jackson-databind 2.9.8
com.fasterxml.jackson.jaxrs:jackson-jaxrs-base 2.9.8
com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider 2.9.8
com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.9.8
com.fasterxml.jackson.module:jackson-module-paranamer 2.9.8
com.fasterxml.woodstox:woodstox-core 5.0.3
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil:jniloader 1.1
com.github.jsr203hadoop:jsr203hadoop 1.0.3
com.github.rwl:jtransforms 2.4.0
com.github.stephenc.jcip:jcip-annotations 1.0-1
com.google.android:annotations 4.1.1.4
com.google.api-client:google-api-client 1.30.10
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1 1.5.1
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta1 0.105.1
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta2 0.105.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1 1.5.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1alpha2 0.105.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta1 0.105.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta2 0.105.1
com.google.api.grpc:proto-google-common-protos 1.18.0
com.google.apis:google-api-services-bigquery v2-rev20200818-1.30.10
com.google.apis:google-api-services-genomics v1beta2-rev9-1.19.0
com.google.apis:google-api-services-storage v1-rev135-1.24.1
com.google.apis:google-api-services-storage v1-rev20190910-1.30.3
com.google.auth:google-auth-library-credentials 0.18.0
com.google.auth:google-auth-library-oauth2-http 0.18.0
com.google.auto.value:auto-value-annotations 1.6.6
com.google.cloud.bigdataoss:gcs-connector 1.9.4-hadoop3
com.google.cloud.bigdataoss:gcsio 1.9.4
com.google.cloud.bigdataoss:util-hadoop 1.9.4-hadoop3
com.google.cloud.bigdataoss:util 1.9.4
com.google.cloud.genomics:gatk-tools-java 1.1
com.google.cloud.genomics:google-genomics-utils v1beta2-0.19
com.google.cloud:google-cloud-bigquery 1.117.1
com.google.cloud:google-cloud-bigquerystorage 1.5.1
com.google.cloud:google-cloud-core-http 1.91.3
com.google.cloud:google-cloud-core 1.91.3
com.google.cloud:google-cloud-nio 0.117.0-alpha
com.google.cloud:google-cloud-storage 1.99.0
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.6.2
com.google.code.gson:gson 2.8.5
com.google.code.gson:gson 2.8.6
com.google.errorprone:error_prone_annotations 2.1.3
com.google.errorprone:error_prone_annotations 2.3.3
com.google.errorprone:error_prone_annotations 2.3.4
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 11.0.2
com.google.guava:guava 15.0
com.google.guava:guava 19.0
com.google.guava:guava 24.1-jre
com.google.guava:guava 27.1-jre
com.google.guava:guava 30.1-jre
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-appengine 1.32.1
com.google.http-client:google-http-client-jackson2 1.36.0
com.google.http-client:google-http-client 1.36.0
com.google.j2objc:j2objc-annotations 1.1
com.google.j2objc:j2objc-annotations 1.3
com.google.oauth-client:google-oauth-client 1.31.0
com.google.protobuf:protobuf-java-util 3.10.0
com.google.protobuf:protobuf-java 3.10.0
com.google.re2j:re2j 1.1
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.protobuf-java-format:protobuf-java-format 1.2
com.itextpdf:itextpdf 5.5.6
com.jamesmurty.utils:java-xmlbuilder 0.4
com.lowagie.tools.ToolboxAvailable:itext 2.1.6
com.nimbusds:nimbus-jose-jwt 4.41.1
com.ning:compress-lzf 1.0.3
com.opencsv:opencsv 3.4
com.squareup.okhttp:okhttp 2.7.5
com.squareup.okio:okio 1.6.0
com.sun.jersey.contribs:jersey-guice 1.19
com.sun.jersey:jersey-client 1.19
com.sun.jersey:jersey-core 1.19
com.sun.jersey:jersey-json 1.19
com.sun.jersey:jersey-server 1.19
com.sun:sunjce_provider 1.8.0_144
com.sun:sunpkcs11 1.8.0_144
com.thoughtworks.paranamer:paranamer 2.8
com.univocity:univocity-parsers 2.7.3
com.vlkan:flatbuffers 1.2.0-3f79e055
commons-beanutils:commons-beanutils 1.9.3
commons-cli:commons-cli 1.2
commons-cli:commons-cli 1.3.1
commons-cli:commons-cli 1.4
commons-codec:commons-codec 1.11
commons-collections:commons-collections 3.2.1
commons-collections:commons-collections 3.2.2
commons-io:commons-io 1.4
commons-io:commons-io 2.1
commons-io:commons-io 2.4
commons-io:commons-io 2.5
commons-io:commons-io 2.6
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.5
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.2
commons-net:commons-net 3.6
commons-pool:commons-pool 1.6
contrasts:contrasts *
daa-converter:daa-converter *
dnsns:dnsns *
dt:dt *
ejml:ejml 0.24
flatlaf:flatlaf *
generator:generator 1.93.5
gov.nist.math.jama:gov.nist.math.jama 1.1.1
hops0:hops0 2
hops0:hops0 35
i4jruntime:i4jruntime *
io.airlift:aircompressor 0.10
io.dropwizard.metrics:metrics-core 3.1.5
io.dropwizard.metrics:metrics-graphite 3.1.5
io.dropwizard.metrics:metrics-json 3.1.5
io.dropwizard.metrics:metrics-jvm 3.1.5
io.netty:netty-all 4.1.42.Final
io.netty:netty-buffer 4.1.48.Final
io.netty:netty-codec-http2 4.1.48.Final
io.netty:netty-codec-http 4.1.48.Final
io.netty:netty-codec-socks 4.1.48.Final
io.netty:netty-codec 4.1.48.Final
io.netty:netty-common 4.1.48.Final
io.netty:netty-handler-proxy 4.1.48.Final
io.netty:netty-handler 4.1.48.Final
io.netty:netty-resolver 4.1.48.Final
io.netty:netty-tcnative-boringssl-static 2.0.30.Final
io.netty:netty-transport-native-epoll 4.1.48.Final
io.netty:netty-transport-native-unix-common 4.1.48.Final
io.netty:netty-transport 4.1.48.Final
io.netty:netty 3.10.6.Final
jaccess:jaccess *
jarhdf5:jarhdf5 2.11.0
javafx-swt:javafx-swt *
javafx:javafx 2.2
jbzip2:jbzip2 0.9
jcommon:jcommon 1.0.15
jconsole:jconsole *
jfreechart:jfreechart 1.0.12
jline:jline 0.9.94
jloda:jloda *
joda-time:joda-time 2.9.9
jrt-fs:jrt-fs 18.0.2.1
jsr311-api:jsr311-api 1.1.1
jsse:jsse 1.8.0_144
junit:junit 4.4
local_policy:local_policy *
localedata:localedata *
log4j:log4j 1.2.15
log4j:log4j 1.2.17
mail:mail 1.4.4
malt:malt *
management-agent:management-agent *
megan:megan *
miglayout:miglayout 3.7.4
nashorn:nashorn 1.8.0_144-b01
net.grey-panther:natural-comparator 1.1
net.java:javax.annotation-api 1.3.2
net.java:javax.servlet-api 3.1.0
net.java:javax.ws.rs-api 2.0.1
net.java:jaxb-api 2.2.11
net.minidev:accessors-smart 1.2
net.minidev:json-smart 2.3
net.razorvine:pyrolite 4.13
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.opencsv:opencsv 2.3
net.sf.py4j:py4j 0.10.7
org.aeonbits.owner:owner 1.0.9
org.antlr:antlr4-runtime 4.7
org.apache.arrow:arrow-format 0.10.0
org.apache.arrow:arrow-memory 0.10.0
org.apache.arrow:arrow-vector 0.10.0
org.apache.avro:avro-guava-dependencies 1.8.2
org.apache.avro:avro-ipc 1.8.2
org.apache.avro:avro-mapred 1.8.2
org.apache.avro:avro 1.8.2
org.apache.commons:commons-collections4 4.3
org.apache.commons:commons-compress 1.19
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-configuration2 2.4
org.apache.commons:commons-crypto 1.0.0
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-lang3 3.8.1
org.apache.commons:commons-lang3 3.9
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-math3 3.6.1
org.apache.commons:commons-math 2.0
org.apache.commons:commons-math 2.2
org.apache.commons:commons-text 1.6
org.apache.commons:commons-vfs2 2.0
org.apache.curator:curator-client 2.13.0
org.apache.curator:curator-framework 2.13.0
org.apache.curator:curator-recipes 2.13.0
org.apache.geronimo.specs:geronimo-activation_1.1_spec 1.0.2
org.apache.geronimo.specs:geronimo-stax-api_1.0_spec 1.0.1
org.apache.hadoop:hadoop-annotations 3.2.1
org.apache.hadoop:hadoop-auth 3.2.1
org.apache.hadoop:hadoop-client 3.2.1
org.apache.hadoop:hadoop-common 3.2.1
org.apache.hadoop:hadoop-hdfs-client 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-common 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-core 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-jobclient 3.2.1
org.apache.hadoop:hadoop-yarn-api 3.2.1
org.apache.hadoop:hadoop-yarn-client 3.2.1
org.apache.hadoop:hadoop-yarn-common 3.2.1
org.apache.hive:hive-storage-api 2.6.0
org.apache.htrace:htrace-core4 4.1.0-incubating
org.apache.httpcomponents:httpclient 4.1.1
org.apache.httpcomponents:httpclient 4.5.10
org.apache.httpcomponents:httpcore 4.1
org.apache.httpcomponents:httpcore 4.4.12
org.apache.kerby:kerb-admin 1.0.1
org.apache.kerby:kerb-client 1.0.1
org.apache.kerby:kerb-common 1.0.1
org.apache.kerby:kerb-core 1.0.1
org.apache.kerby:kerb-crypto 1.0.1
org.apache.kerby:kerb-identity 1.0.1
org.apache.kerby:kerb-server 1.0.1
org.apache.kerby:kerb-simplekdc 1.0.1
org.apache.kerby:kerb-util 1.0.1
org.apache.kerby:kerby-asn1 1.0.1
org.apache.kerby:kerby-config 1.0.1
org.apache.kerby:kerby-pkix 1.0.1
org.apache.kerby:kerby-util 1.0.1
org.apache.kerby:kerby-xdr 1.0.1
org.apache.kerby:token-provider 1.0.1
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.5
org.apache.logging.log4j:log4j-jcl 2.3
org.apache.logging.log4j:log4j-slf4j-impl 2.5
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.orc:orc-core 1.5.5
org.apache.orc:orc-mapreduce 1.5.5
org.apache.orc:orc-shims 1.5.5
org.apache.parquet:parquet-avro 1.10.1
org.apache.parquet:parquet-column 1.10.1
org.apache.parquet:parquet-common 1.10.1
org.apache.parquet:parquet-encoding 1.10.1
org.apache.parquet:parquet-format 2.4.0
org.apache.parquet:parquet-hadoop 1.10.1
org.apache.parquet:parquet-jackson 1.10.1
org.apache.servicemix.bundles:org.apache.servicemix.bundles.jaxb-impl 2.1.6_1
org.apache.servicemix.specs:org.apache.servicemix.specs.jaxb-api-2.1 1.2.0
org.apache.servicemix.specs:org.apache.servicemix.specs.locator 1.2.0
org.apache.servicemix.specs:org.apache.servicemix.specs.stax-api-1.0 1.2.0
org.apache.spark:spark-catalyst_2.11 2.4.5
org.apache.spark:spark-core_2.11 2.4.5
org.apache.spark:spark-graphx_2.11 2.4.5
org.apache.spark:spark-kvstore_2.11 2.4.5
org.apache.spark:spark-launcher_2.11 2.4.5
org.apache.spark:spark-mllib-local_2.11 2.4.5
org.apache.spark:spark-mllib_2.11 2.4.5
org.apache.spark:spark-network-common_2.11 2.4.5
org.apache.spark:spark-network-shuffle_2.11 2.4.5
org.apache.spark:spark-sketch_2.11 2.4.5
org.apache.spark:spark-sql_2.11 2.4.5
org.apache.spark:spark-streaming_2.11 2.4.5
org.apache.spark:spark-tags_2.11 2.4.5
org.apache.spark:spark-unsafe_2.11 2.4.5
org.apache.xbean:xbean-asm-util 4.8
org.apache.xbean:xbean-asm6-shaded 4.8
org.apache.xmlcommons.Version:xml-apis 1.0.b2
org.apache.yetus:audience-annotations 0.5.0
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.28.0
org.bdgenomics.adam:adam-core-spark2_2.11 0.28.0
org.bdgenomics.bdg-formats:bdg-formats 0.13.0
org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-io-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.15
org.bioinfo.ngs:qualimap 2.2.2-dev
org.bioinfo:bioinfo-chart 0.3.0
org.bioinfo:bioinfo-commons 0.10.1
org.bioinfo:bioinfo-data 0.6.0
org.bioinfo:bioinfo-formats 0.2.0
org.bioinfo:bioinfo-graphics 0.4.0
org.bioinfo:bioinfo-math 0.3.0
org.bioinfo:bioinfo-ngs 0.1.0
org.bioinfo:bioinfo-report 0.1.0
org.bioinfo:bioinfo-tool 0.9.0
org.biopax.paxtools:biopax-converter 2.0-SNAPSHOT
org.biopax.paxtools:pathwaycommons-client 2.0-SNAPSHOT
org.biopax.paxtools:paxtools-core 2.0-SNAPSHOT
org.biopax.paxtools:paxtools-jena-io 2.0-SNAPSHOT
org.biopax.paxtools:paxtools-main 2.0-SNAPSHOT
org.biopax.paxtools:paxtools-simple-io 2.0-SNAPSHOT
org.biopax.paxtools:psimi-converter 2.0-SNAPSHOT
org.biopax.paxtools:sif-converter 2.0-SNAPSHOT
org.biopax.paxtools:validator-client 2.0-SNAPSHOT
org.broadinstitute.gatk.engine.CommandLineGATK:GenomeAnalysisTK *
org.broadinstitute.gatk:gatk-engine 3.5
org.broadinstitute.gatk:gatk-package-distribution 3.5
org.broadinstitute.gatk:gatk-tools-protected 3.5
org.broadinstitute.gatk:gatk-tools-public 3.5
org.broadinstitute.gatk:gatk-utils 3.5
org.broadinstitute.hellbender.Main:gatk-package 4.2.0.0-local
org.codehaus.janino:commons-compiler 3.0.9
org.codehaus.janino:janino 3.0.9
org.codehaus.jettison:jettison 1.1
org.codehaus.mojo:animal-sniffer-annotations 1.14
org.codehaus.mojo:animal-sniffer-annotations 1.18
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-utils 1.5.6
org.codehaus.woodstox:stax2-api 3.1.4
org.disq-bio:disq 0.3.6
org.dom4j:dom4j 1.6.1
org.eclipse.jetty:jetty-client 9.3.27.v20190418
org.eclipse.jetty:jetty-continuation 9.3.27.v20190418
org.eclipse.jetty:jetty-http 9.3.27.v20190418
org.eclipse.jetty:jetty-io 9.3.27.v20190418
org.eclipse.jetty:jetty-plus 9.3.27.v20190418
org.eclipse.jetty:jetty-proxy 9.3.27.v20190418
org.eclipse.jetty:jetty-security 9.3.27.v20190418
org.eclipse.jetty:jetty-server 9.3.27.v20190418
org.eclipse.jetty:jetty-servlet 9.3.27.v20190418
org.eclipse.jetty:jetty-servlets 9.3.27.v20190418
org.eclipse.jetty:jetty-util 9.3.27.v20190418
org.eclipse.jetty:jetty-webapp 9.3.24.v20180605
org.eclipse.jetty:jetty-xml 9.3.24.v20180605
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.genomicsdb:genomicsdb 1.3.2
org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
org.glassfish.hk2.external:javax.inject 2.4.0-b34
org.glassfish.hk2:hk2-api 2.4.0-b34
org.glassfish.hk2:hk2-locator 2.4.0-b34
org.glassfish.hk2:hk2-utils 2.4.0-b34
org.glassfish.hk2:osgi-resource-locator 1.0.1
org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
org.glassfish.jersey.core:jersey-client 2.22.2
org.glassfish.jersey.core:jersey-common 2.22.2
org.glassfish.jersey.core:jersey-server 2.22.2
org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
org.javassist:javassist 3.16.1-GA
org.javassist:javassist 3.18.2-GA
org.jctools:jctools-core 3.0.0
org.jdom:jdom 1.1
org.jfree:jcommon 1.0.24
org.jgrapht:jgrapht-core 0.9.1
org.jpmml:pmml-model 1.2.15
org.jpmml:pmml-schema 1.2.15
org.json:json 20200518
org.jvnet:tiger-types 1.4
org.mortbay.jetty:jetty-util 6.1.26
org.mortbay.jetty:jetty 6.1.26
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.reflections:reflections 0.9.10
org.reflections:reflections 0.9.9-RC1
org.roaringbitmap:RoaringBitmap 0.7.45
org.roaringbitmap:shims 0.7.45
org.sharegov:mjson 1.4.1
org.simpleframework:simple-xml 2.0.4
org.slf4j:jcl-over-slf4j 1.7.16
org.slf4j:slf4j-api 1.6.1
org.slf4j:slf4j-api 1.7.14
org.slf4j:slf4j-api 1.7.30
org.slf4j:slf4j-log4j12 1.7.25
org.slf4j:slf4j-log4j12 1.7.5
org.sonatype.oss:dnsjava 2.1.7
org.sonatype.oss:drmaa-common 1.0
org.sonatype.oss:drmaa-gridengine 6.2u5
org.sonatype.oss:jcommon 1.0.16
org.sonatype.oss:kryo-serializers 0.42
org.spark-project.spark:unused 1.0.0
org.threeten:threetenbp 1.4.0
org.xerial.snappy:snappy-java 1.0.3-rc3
org.xerial.thirdparty:nestedvm 1.0
org.xerial:sqlite-jdbc 3.20.1
org.xerial:sqlite-jdbc 3.30.1
org.xerial:sqlite-jdbc 3.6.16
org.xml.sax:sax 2.0.1
picard:picard 1.70
picard:picard 2.26.0
psi25-xml:psi25-xml 1.7.7
realign:realign 1.93.5
resources:resources 1.8.0_144
rt:rt 1.8.0_144
sa-jdi:sa-jdi *
sam:sam 1.103
samtools:samtools 1.70
sis-jhdf5-batteries_included:sis-jhdf5-batteries_included *
tools:tools *
validation-api:validation-api 1.1.0.Final
xxindex:xxindex 0.6
zipfs:zipfs 1.8.0_144

java 18.0.2.1 1
python 2.7.16
python 3.8.5
python 3.9.4

edirect (devel)
github.com/fatih/color v1.12.0
github.com/gedex/inflector v0.0.0-20170307190818-16278e9db813
github.com/klauspost/cpuid v1.3.1
github.com/mattn/go-colorable v0.1.8
github.com/mattn/go-isatty v0.0.12
github.com/pbnjay/memory v0.0.0-20210728143218-7b4eea64cf58
github.com/rainycape/unidecode v0.0.0-20150907023854-cb7f23ec59be
github.com/surgebase/porter2 v0.0.0-20150829210152-56e4718818e8
golang.org/x/sys v0.0.0-20200223170610-d5e6a3e2c0ae
golang.org/x/text v0.3.7