Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

broadinstitute/viral-ngs : 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

Latest release: over 5 years ago - 25,404 downloads - 417 dependencies

JSON

Dependencies

ggplot2 3.2.1
KernSmooth 2.23-15
MASS 7.3-51.4
Matrix 1.2-17
R6 2.4.0
RColorBrewer 1.1-2
Rcpp 1.0.2
assertthat 0.2.1
backports 1.1.5
base 3.5.1
bitops 1.0-6
caTools 1.17.1.2
cli 1.1.0
colorspace 1.4-1
compiler 3.5.1
crayon 1.3.4
datasets 3.5.1
digest 0.6.21
ellipsis 0.3.0
fansi 0.4.0
gdata 2.18.0
glue 1.3.1
gplots 3.0.1.1
grDevices 3.5.1
graphics 3.5.1
grid 3.5.1
gsalib 2.1
gtable 0.3.0
gtools 3.8.1
labeling 0.3
lattice 0.20-38
lazyeval 0.2.2
magrittr 1.5
methods 3.5.1
mgcv 1.8-29
munsell 0.5.0
nlme 3.1-141
parallel 3.5.1
pillar 1.4.2
pkgconfig 2.0.3
plyr 1.8.4
reshape2 1.4.3
reshape 0.8.8
rlang 0.4.0
scales 1.0.0
splines 3.5.1
stats4 3.5.1
stats 3.5.1
stringi 1.4.3
stringr 1.4.0
tcltk 3.5.1
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 2.1.3
tools 3.5.1
translations 3.5.1
utf8 1.1.4
utils 3.5.1
vctrs 0.2.0
viridisLite 0.3.0
withr 2.1.2
zeallot 0.1.0

ubuntu/adduser 3.116ubuntu1
ubuntu/apt 1.6.11
ubuntu/awscli 1.14.44-1ubuntu1
ubuntu/base-files 10.1ubuntu2.4
ubuntu/base-passwd 3.5.44
ubuntu/bash 4.4.18-2ubuntu1.2
ubuntu/bsdutils 1:2.31.1-0.4ubuntu3.3
ubuntu/bzip2 1.0.6-8.1ubuntu0.2
ubuntu/ca-certificates 20180409
ubuntu/coreutils 8.28-1ubuntu1
ubuntu/curl 7.58.0-2ubuntu3.7
ubuntu/dash 0.5.8-2.10
ubuntu/debconf 1.5.66ubuntu1
ubuntu/debianutils 4.8.4
ubuntu/diffutils 1:3.6-1
ubuntu/dirmngr 2.2.4-1ubuntu1.2
ubuntu/distro-info-data 0.37ubuntu0.5
ubuntu/docutils-common 0.14 dfsg-3
ubuntu/dpkg 1.19.0.5ubuntu2.1
ubuntu/e2fsprogs 1.44.1-1ubuntu1.1
ubuntu/fdisk 2.31.1-0.4ubuntu3.3
ubuntu/findutils 4.6.0 git 20170828-2
ubuntu/fonts-dejavu-core 2.37-1
ubuntu/fonts-dejavu-extra 2.37-1
ubuntu/fonts-dejavu 2.37-1
ubuntu/gcc-8-base 8.3.0-6ubuntu1~18.04.1
ubuntu/git-man 1:2.17.1-1ubuntu0.4
ubuntu/git 1:2.17.1-1ubuntu0.4
ubuntu/gnupg-l10n 2.2.4-1ubuntu1.2
ubuntu/gnupg-utils 2.2.4-1ubuntu1.2
ubuntu/gnupg 2.2.4-1ubuntu1.2
ubuntu/google-cloud-sdk 253.0.0-0
ubuntu/gpg-agent 2.2.4-1ubuntu1.2
ubuntu/gpg-wks-client 2.2.4-1ubuntu1.2
ubuntu/gpg-wks-server 2.2.4-1ubuntu1.2
ubuntu/gpg 2.2.4-1ubuntu1.2
ubuntu/gpgconf 2.2.4-1ubuntu1.2
ubuntu/gpgsm 2.2.4-1ubuntu1.2
ubuntu/gpgv 2.2.4-1ubuntu1.2
ubuntu/grep 3.1-2
ubuntu/gzip 1.6-5ubuntu1
ubuntu/hostname 3.20
ubuntu/init-system-helpers 1.51
ubuntu/lbzip2 2.5-2
ubuntu/less 487-0.1
ubuntu/libacl1 2.2.52-3build1
ubuntu/libapt-pkg5.0 1.6.11
ubuntu/libasn1-8-heimdal 7.5.0 dfsg-1
ubuntu/libassuan0 2.5.1-2
ubuntu/libattr1 1:2.4.47-2build1
ubuntu/libaudit-common 1:2.8.2-1ubuntu1
ubuntu/libaudit1 1:2.8.2-1ubuntu1
ubuntu/libblkid1 2.31.1-0.4ubuntu3.3
ubuntu/libbz2-1.0 1.0.6-8.1ubuntu0.2
ubuntu/libc-bin 2.27-3ubuntu1
ubuntu/libc6 2.27-3ubuntu1
ubuntu/libcap-ng0 0.7.7-3.1
ubuntu/libcom-err2 1.44.1-1ubuntu1.1
ubuntu/libcurl3-gnutls 7.58.0-2ubuntu3.7
ubuntu/libcurl4 7.58.0-2ubuntu3.7
ubuntu/libdb5.3 5.3.28-13.1ubuntu1.1
ubuntu/libdebconfclient0 0.213ubuntu1
ubuntu/liberror-perl 0.17025-1
ubuntu/libexpat1 2.2.5-3ubuntu0.1
ubuntu/libext2fs2 1.44.1-1ubuntu1.1
ubuntu/libfdisk1 2.31.1-0.4ubuntu3.3
ubuntu/libffi6 3.2.1-8
ubuntu/libgcc1 1:8.3.0-6ubuntu1~18.04.1
ubuntu/libgcrypt20 1.8.1-4ubuntu1.1
ubuntu/libgdbm-compat4 1.14.1-6
ubuntu/libgdbm5 1.14.1-6
ubuntu/libgmp10 2:6.1.2 dfsg-2
ubuntu/libgnutls30 3.5.18-1ubuntu1.1
ubuntu/libgpg-error0 1.27-6
ubuntu/libgpm2 1.20.7-5
ubuntu/libgssapi-krb5-2 1.16-2ubuntu0.1
ubuntu/libgssapi3-heimdal 7.5.0 dfsg-1
ubuntu/libhcrypto4-heimdal 7.5.0 dfsg-1
ubuntu/libheimbase1-heimdal 7.5.0 dfsg-1
ubuntu/libheimntlm0-heimdal 7.5.0 dfsg-1
ubuntu/libhogweed4 3.4-1
ubuntu/libhx509-5-heimdal 7.5.0 dfsg-1
ubuntu/libidn2-0 2.0.4-1.1build2
ubuntu/libk5crypto3 1.16-2ubuntu0.1
ubuntu/libkeyutils1 1.5.9-9.2ubuntu2
ubuntu/libkrb5-26-heimdal 7.5.0 dfsg-1
ubuntu/libkrb5-3 1.16-2ubuntu0.1
ubuntu/libkrb5support0 1.16-2ubuntu0.1
ubuntu/libksba8 1.3.5-2
ubuntu/libldap-2.4-2 2.4.45 dfsg-1ubuntu1.2
ubuntu/libldap-common 2.4.45 dfsg-1ubuntu1.2
ubuntu/liblz4-1 0.0~r131-2ubuntu3
ubuntu/liblz4-tool 0.0~r131-2ubuntu3
ubuntu/liblzma5 5.2.2-1.3
ubuntu/libmount1 2.31.1-0.4ubuntu3.3
ubuntu/libmpdec2 2.4.2-1ubuntu1
ubuntu/libncurses5 6.1-1ubuntu1.18.04
ubuntu/libncursesw5 6.1-1ubuntu1.18.04
ubuntu/libnettle6 3.4-1
ubuntu/libnghttp2-14 1.30.0-1ubuntu1
ubuntu/libnpth0 1.5-3
ubuntu/libp11-kit0 0.23.9-2
ubuntu/libpam-modules-bin 1.1.8-3.6ubuntu2.18.04.1
ubuntu/libpam-modules 1.1.8-3.6ubuntu2.18.04.1
ubuntu/libpam-runtime 1.1.8-3.6ubuntu2.18.04.1
ubuntu/libpam0g 1.1.8-3.6ubuntu2.18.04.1
ubuntu/libpcre3 2:8.39-9
ubuntu/libperl5.26 5.26.1-6ubuntu0.3
ubuntu/libpopt0 1.16-11
ubuntu/libprocps6 2:3.3.12-3ubuntu1.1
ubuntu/libpsl5 0.19.1-5build1
ubuntu/libpython-stdlib 2.7.15~rc1-1
ubuntu/libpython2.7-minimal 2.7.15-4ubuntu4~18.04
ubuntu/libpython2.7-stdlib 2.7.15-4ubuntu4~18.04
ubuntu/libpython3-stdlib 3.6.7-1~18.04
ubuntu/libpython3.6-minimal 3.6.8-1~18.04.1
ubuntu/libpython3.6-stdlib 3.6.8-1~18.04.1
ubuntu/libpython3.6 3.6.8-1~18.04.1
ubuntu/libreadline7 7.0-3
ubuntu/libroken18-heimdal 7.5.0 dfsg-1
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-1
ubuntu/libsasl2-2 2.1.27~101-g0780600 dfsg-3ubuntu2
ubuntu/libsasl2-modules-db 2.1.27~101-g0780600 dfsg-3ubuntu2
ubuntu/libseccomp2 2.4.1-0ubuntu0.18.04.2
ubuntu/libselinux1 2.7-2build2
ubuntu/libsemanage-common 2.7-2build2
ubuntu/libsemanage1 2.7-2build2
ubuntu/libsepol1 2.7-1
ubuntu/libsmartcols1 2.31.1-0.4ubuntu3.3
ubuntu/libsqlite3-0 3.22.0-1ubuntu0.1
ubuntu/libss2 1.44.1-1ubuntu1.1
ubuntu/libssl1.1 1.1.1-1ubuntu2.1~18.04.3
ubuntu/libstdc 6 8.3.0-6ubuntu1~18.04.1
ubuntu/libsystemd0 237-3ubuntu10.24
ubuntu/libtasn1-6 4.13-2
ubuntu/libtinfo5 6.1-1ubuntu1.18.04
ubuntu/libudev1 237-3ubuntu10.24
ubuntu/libunistring2 0.9.9-0ubuntu2
ubuntu/libuuid1 2.31.1-0.4ubuntu3.3
ubuntu/libwind0-heimdal 7.5.0 dfsg-1
ubuntu/libyaml-0-2 0.1.7-2ubuntu3
ubuntu/libzstd1 1.3.3 dfsg-2ubuntu1
ubuntu/locales 2.27-3ubuntu1
ubuntu/login 1:4.5-1ubuntu2
ubuntu/lsb-base 9.20170808ubuntu1
ubuntu/lsb-release 9.20170808ubuntu1
ubuntu/make 4.1-9.1ubuntu1
ubuntu/mawk 1.3.3-17ubuntu3
ubuntu/mime-support 3.60ubuntu1
ubuntu/mount 2.31.1-0.4ubuntu3.3
ubuntu/nano 2.9.3-2
ubuntu/ncurses-base 6.1-1ubuntu1.18.04
ubuntu/ncurses-bin 6.1-1ubuntu1.18.04
ubuntu/openssl 1.1.1-1ubuntu2.1~18.04.3
ubuntu/passwd 1:4.5-1ubuntu2
ubuntu/perl-base 5.26.1-6ubuntu0.3
ubuntu/perl-modules-5.26 5.26.1-6ubuntu0.3
ubuntu/perl 5.26.1-6ubuntu0.3
ubuntu/pigz 2.4-1
ubuntu/pinentry-curses 1.1.0-1
ubuntu/procps 2:3.3.12-3ubuntu1.1
ubuntu/python-crcmod 1.7-2build4
ubuntu/python-minimal 2.7.15~rc1-1
ubuntu/python2.7-minimal 2.7.15-4ubuntu4~18.04
ubuntu/python2.7 2.7.15-4ubuntu4~18.04
ubuntu/python3-botocore 1.8.48 repack-1
ubuntu/python3-certifi 2018.1.18-2
ubuntu/python3-chardet 3.0.4-1
ubuntu/python3-colorama 0.3.7-1
ubuntu/python3-dateutil 2.6.1-1
ubuntu/python3-docutils 0.14 dfsg-3
ubuntu/python3-idna 2.6-1
ubuntu/python3-jmespath 0.9.3-1ubuntu1
ubuntu/python3-minimal 3.6.7-1~18.04
ubuntu/python3-pkg-resources 39.0.1-2
ubuntu/python3-pyasn1 0.4.2-3
ubuntu/python3-requests 2.18.4-2ubuntu0.1
ubuntu/python3-roman 2.0.0-3
ubuntu/python3-rsa 3.4.2-1
ubuntu/python3-s3transfer 0.1.13-1
ubuntu/python3-six 1.11.0-2
ubuntu/python3-urllib3 1.22-1ubuntu0.18.04.1
ubuntu/python3-yaml 3.12-1build2
ubuntu/python3.6-minimal 3.6.8-1~18.04.1
ubuntu/python3.6 3.6.8-1~18.04.1
ubuntu/python3 3.6.7-1~18.04
ubuntu/python 2.7.15~rc1-1
ubuntu/readline-common 7.0-3
ubuntu/rsync 3.1.2-2.1ubuntu1
ubuntu/sed 4.4-2
ubuntu/sensible-utils 0.0.12
ubuntu/sgml-base 1.29
ubuntu/sysvinit-utils 2.88dsf-59.10ubuntu1
ubuntu/tar 1.29b-2ubuntu0.1
ubuntu/ttf-dejavu-core 2.37-1
ubuntu/ttf-dejavu-extra 2.37-1
ubuntu/ttf-dejavu 2.37-1
ubuntu/tzdata 2019b-0ubuntu0.18.04
ubuntu/ubuntu-keyring 2018.09.18.1~18.04.0
ubuntu/util-linux 2.31.1-0.4ubuntu3.3
ubuntu/vim-common 2:8.0.1453-1ubuntu1.1
ubuntu/vim-runtime 2:8.0.1453-1ubuntu1.1
ubuntu/vim 2:8.0.1453-1ubuntu1.1
ubuntu/wget 1.19.4-1ubuntu2.2
ubuntu/xml-core 0.18
ubuntu/xxd 2:8.0.1453-1ubuntu1.1
ubuntu/zlib1g 1:1.2.11.dfsg-0ubuntu2
ubuntu/zstd 1.3.3 dfsg-2ubuntu1

POpen4 0.1.4
Platform 0.4.0
activesupport 3.2.12
addressable 2.3.4
bonsai 1.4.8
builder 3.2.0
hpricot 0.8.6
i18n 0.6.4
launchy 2.3.0
liquid 2.5.0
maruku 0.6.1
multi_json 1.7.3
mustache 0.99.4
open4 1.3.0
rack-protection 1.5.0
rack 1.5.2
rake 10.0.3
rdiscount 2.0.7.2
ronn 0.7.3
sass 3.2.8
sinatra 1.4.2
syntax 1.0.0
tilt 1.4.0
watch 0.1.0
yui-compressor 0.9.6

python 3.6.7
python 3.7.3

Jaligner:Jaligner *
US_export_policy:US_export_policy *
charsets:charsets *
cisd-jhdf5:cisd-jhdf5 *
cldrdata:cldrdata *
com.google.guava:guava 15.0
com.googlecode.charts4j:charts4j 1.3
com.sun:jce 1.8.0_192
com.sun:jce 1.8.0_92
com.sun:sunec 1.8.0_192
com.sun:sunec 1.8.0_92
com.sun:sunjce_provider 1.8.0_192
com.sun:sunjce_provider 1.8.0_92
com.sun:sunpkcs11 1.8.0_192
com.sun:sunpkcs11 1.8.0_92
commons-cli:commons-cli 1.2
commons-codec:commons-codec 1.10
commons-io:commons-io 1.4
commons-io:commons-io 2.4
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
dnsns:dnsns *
dt:dt *
jaccess:jaccess *
java-getopt:java-getopt 1.0.13
jbzip2:jbzip2 0.9
jconsole:jconsole *
jsse:jsse 1.8.0_192
jsse:jsse 1.8.0_92
local_policy:local_policy *
localedata:localedata *
log4j:log4j 1.2.15
management-agent:management-agent *
nashorn:nashorn 1.8.0_192-b01
nashorn:nashorn 1.8.0_92-b15
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.jung:jung-algorithms 2.0.1
net.sf.jung:jung-api 2.0.1
net.sf.jung:jung-graph-impl 2.0.1
org.apache.commons.collections15:collections-generic 4.01
org.apache.commons:commons-collections4 4.3
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-math3 3.2
org.apache.commons:commons-math3 3.5
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.5
org.apfloat:apfloat 1.6.3
org.biojava:biojava3-core 3.0.7
org.biojava:biojava3-structure 3.0.7
org.eclipse.jdt.internal.jarinjarloader.JarRsrcLoader:Butterfly *
org.eclipse.jdt.internal.jarinjarloader.JarRsrcLoader:ExitTester *
org.snpeff.SnpEff:snpEff *
org.usadellab.trimmomatic.Trimmomatic:trimmomatic *
picard:picard 2.21.1-SNAPSHOT
resources:resources 1.8.0_192
resources:resources 1.8.0_92
rt:rt 1.8.0_192
rt:rt 1.8.0_92
sa-jdi:sa-jdi *
sam:sam 1.103
tools:tools *
zipfs:zipfs 1.8.0_192
zipfs:zipfs 1.8.0_92

jquery-ui 1.12.1

ConfigArgParse 0.13.0
Django 1.10.0
GitPython 3.0.3
Jinja2 2.10.1
MarkupSafe 1.1.1
PyNaCl 1.3.0
PySocks 1.6.8
PySocks 1.7.1
PyYAML 3.11
PyYAML 3.12
PyYAML 5.1
Pygments 2.4.2
SocksiPy-branch 1.01
Sphinx 1.4.4
aioeasywebdav 2.4.0
aiohttp 3.6.1
apipkg 1.5
appdirs 1.4.3
argcomplete 1.10.0
argparse 1.2.1
arrow 0.12.1
asn1crypto 0.24.0
asn1crypto 1.0.0
async-timeout 3.0.1
atomicwrites 1.3.0
attrs 19.1.0
awscli 1.14.44
backports.ssl-match-hostname 3.5.0.1
bcrypt 3.1.6
beautifulsoup4 4.4.1
biopython 1.72
boto3 1.9.241
botocore 1.12.241
botocore 1.8.48
cachetools 2.1.0
certifi 2018.1.18
certifi 2019.03.09
certifi 2019.6.16
certifi 2019.9.11
cffi 1.12.2
cffi 1.12.3
chardet 3.0.4
colorama 0.2.4
colorama 0.3.7
conda 4.6.14
coverage 3.7.1
coverage 4.5.2
coveralls 1.3.0
crcmod 1.7
cryptography 2.2.2
cryptography 2.6.1
cryptography 2.7
cycler 0.10.0
datrie 0.8
decorator 4.4.0
docopt 0.6.2
docutils 0.14
docutils 0.15.2
dropbox 9.4.0
dxpy 0.285.0
dxpy 0.288.0
enum34 1.1.6
execnet 1.7.1
filechunkio 1.8
flake8 3.4.1
flake8 3.5.0
flask 0.10.1
ftputil 3.4
future 0.16.0
futures 2.2.0
futures 3.2.0
futures 3.3.0
gitdb2 2.0.6
gnureadline 6.3.8
google-api-core 1.14.2
google-auth 1.6.3
google-cloud-core 1.0.3
google-cloud-storage 1.20.0
google-resumable-media 0.4.1
googleapis-common-protos 1.6.0
idna-ssl 1.1.0
idna 2.6
idna 2.7
idna 2.8
importlib-metadata 0.23
ipaddress 1.0.22
jmespath 0.9.3
jmespath 0.9.4
jsonpickle 0.9.3
jsonschema 2.6.0
kiwisolver 1.1.0
lxml 4.3.3
matplotlib 2.2.4
mccabe 0.6.1
mock 1.0.1
mock 2.0.0
more-itertools 7.2.0
multidict 4.5.2
networkx 2.3
nose 1.3.3
numpy 1.17.2
oauth2client 3.0.0
oauth2client 4.1.3
ordereddict 1.1
pandas 0.25.1
paramiko 2.6.0
pbr 5.4.2
pexpect 4.6
pip 19.0.1
pip 19.0.3
pip 19.2.1
pkg_resources 0.0.0
pluggy 0.12.0
prettytable 0.7.2
protobuf 3.9.2
psutil 5.6.3
py 1.8.0
pyOpenSSL 19.0.0
pyasn1-modules 0.2.6
pyasn1 0.4.2
pyasn1 0.4.6
pybedtools 0.7.10
pycodestyle 2.2.0
pycosat 0.6.3
pycparser 2.19
pyflakes 1.6.0
pygraphviz 1.5
pyopenssl 17.5.0
pyparsing 2.4.2
pysam 0.15.0
pysftp 0.2.9
pytest-cov 2.5.1
pytest-cov 2.6.1
pytest-forked 0.2
pytest-forked 1.0.2
pytest-mock 1.10.0
pytest-randomly 1.2.1
pytest-timeout 1.2.0
pytest-xdist 1.20.0
pytest-xdist 1.26.1
pytest 3.2.1
pytest 3.5.1
pytest 4.2.0
python-dateutil 2.6.1
python-dateutil 2.8.0
python-irodsclient 0.7.0
python-magic 0.4.6
pytz 2019.2
ratelimiter 1.2.0
requests 2.18.4
requests 2.20.0
requests 2.21.0
requests 2.22.0
roman 2.0.0
rsa 3.1.4
rsa 3.4.2
ruamel_yaml 0.15.46
s3transfer 0.1.13
s3transfer 0.2.1
setuptools 41.0.0
setuptools 41.0.1
simplejson 3.5.2
simplejson 3.6.5
six 1.10.0
six 1.11.0
six 1.12.0
smmap2 2.0.5
snakemake 5.6.0
sphinx-argparse 0.1.15
sphinx 1.2.3
sphinx_rtd_theme 0.1.9
tornado 6.0.3
typing-extensions 3.7.4
unittest2 0.5.1
urllib3 1.22
urllib3 1.24.1
urllib3 1.25.3
urllib3 1.25.6
websocket-client 0.53.0
wheel 0.33.1
wheel 0.33.4
wrapt 1.11.2
wsgiref 0.1.2
xattr 0.9.6
xmlrunner 1.7.7
yarl 1.3.0
zipp 0.6.0