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broadinstitute/viral-phylo : 2.0.21.5
Ubuntu 18.04.3 LTS
Latest release: over 4 years ago - 4,426 downloads - 431 dependencies
JSONDependencies
- KernSmooth 2.23-16
- MASS 7.3-51.5
- Matrix 1.2-18
- R6 2.4.1
- RColorBrewer 1.1-2
- Rcpp 1.0.4.6
- assertthat 0.2.1
- backports 1.1.6
- base 3.6.1
- bitops 1.0-6
- caTools 1.18.0
- callr 3.4.3
- cli 2.0.2
- colorspace 1.4-1
- compiler 3.6.1
- crayon 1.3.4
- datasets 3.6.1
- desc 1.2.0
- digest 0.6.25
- ellipsis 0.3.0
- evaluate 0.14
- fansi 0.4.1
- farver 2.0.3
- gdata 2.18.0
- ggplot2 3.3.0
- glue 1.4.0
- gplots 3.0.3
- grDevices 3.6.1
- graphics 3.6.1
- grid 3.6.1
- gsalib 2.1
- gtable 0.3.0
- gtools 3.8.2
- isoband 0.2.1
- labeling 0.3
- lattice 0.20-41
- lifecycle 0.2.0
- magrittr 1.5
- methods 3.6.1
- mgcv 1.8-31
- munsell 0.5.0
- nlme 3.1-147
- parallel 3.6.1
- pillar 1.4.3
- pkgbuild 1.0.6
- pkgconfig 2.0.3
- pkgload 1.0.2
- plyr 1.8.6
- praise 1.0.0
- prettyunits 1.1.1
- processx 3.4.2
- ps 1.3.2
- reshape 0.8.8
- rlang 0.4.5
- rprojroot 1.3-2
- rstudioapi 0.11
- scales 1.1.0
- splines 3.6.1
- stats4 3.6.1
- stats 3.6.1
- tcltk 3.6.1
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 2.3.2
- tibble 3.0.0
- tools 3.6.1
- translations 3.6.1
- utf8 1.1.4
- utils 3.6.1
- vctrs 0.2.4
- viridisLite 0.3.0
- withr 2.1.2
- zeallot 0.1.0
- ubuntu/adduser 3.116ubuntu1
- ubuntu/apt 1.6.12
- ubuntu/awscli 1.14.44-1ubuntu1
- ubuntu/base-files 10.1ubuntu2.7
- ubuntu/base-passwd 3.5.44
- ubuntu/bash 4.4.18-2ubuntu1.2
- ubuntu/bsdutils 1:2.31.1-0.4ubuntu3.4
- ubuntu/bzip2 1.0.6-8.1ubuntu0.2
- ubuntu/ca-certificates 20180409
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- ubuntu/libsasl2-modules-db 2.1.27~101-g0780600 dfsg-3ubuntu2
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- ubuntu/perl-base 5.26.1-6ubuntu0.3
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- ubuntu/pigz 2.4-1
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- ubuntu/python-crcmod 1.7-2build4
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- ubuntu/python3-colorama 0.3.7-1
- ubuntu/python3-dateutil 2.6.1-1
- ubuntu/python3-docutils 0.14 dfsg-3
- ubuntu/python3-idna 2.6-1
- ubuntu/python3-jmespath 0.9.3-1ubuntu1
- ubuntu/python3-minimal 3.6.7-1~18.04
- ubuntu/python3-pkg-resources 39.0.1-2
- ubuntu/python3-pyasn1 0.4.2-3
- ubuntu/python3-requests 2.18.4-2ubuntu0.1
- ubuntu/python3-roman 2.0.0-3
- ubuntu/python3-rsa 3.4.2-1
- ubuntu/python3-s3transfer 0.1.13-1
- ubuntu/python3-six 1.11.0-2
- ubuntu/python3-urllib3 1.22-1ubuntu0.18.04.1
- ubuntu/python3-yaml 3.12-1build2
- ubuntu/python3.6-minimal 3.6.8-1~18.04.3
- ubuntu/python3.6 3.6.8-1~18.04.3
- ubuntu/python3 3.6.7-1~18.04
- ubuntu/python 2.7.15~rc1-1
- ubuntu/readline-common 7.0-3
- ubuntu/rsync 3.1.2-2.1ubuntu1
- ubuntu/sed 4.4-2
- ubuntu/sensible-utils 0.0.12
- ubuntu/sgml-base 1.29
- ubuntu/sysvinit-utils 2.88dsf-59.10ubuntu1
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- ubuntu/ttf-dejavu-core 2.37-1
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- ubuntu/tzdata 2019c-0ubuntu0.18.04
- ubuntu/ubuntu-keyring 2018.09.18.1~18.04.0
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- POpen4 0.1.4
- Platform 0.4.0
- activesupport 3.2.12
- addressable 2.3.4
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- builder 3.2.0
- hpricot 0.8.6
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- launchy 2.3.0
- liquid 2.5.0
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- rack 1.5.2
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- syntax 1.0.0
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- watch 0.1.0
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- US_export_policy:US_export_policy *
- charsets:charsets *
- cisd-jhdf5:cisd-jhdf5 *
- cldrdata:cldrdata *
- com.google.guava:guava 11.0.2
- com.google.guava:guava 15.0
- com.googlecode.charts4j:charts4j 1.3
- com.jamesmurty.utils:java-xmlbuilder 0.4
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- com.sun:sunec 1.8.0_192
- com.sun:sunjce_provider 1.8.0_192
- com.sun:sunpkcs11 1.8.0_192
- commons-cli:commons-cli 1.2
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- commons-io:commons-io 2.1
- commons-io:commons-io 2.4
- commons-lang:commons-lang 2.4
- commons-lang:commons-lang 2.5
- commons-lang:commons-lang 2.6
- commons-logging:commons-logging 1.1.1
- dnsns:dnsns *
- dt:dt *
- jaccess:jaccess *
- javax.mail:mail 1.4.4
- jbzip2:jbzip2 0.9
- jconsole:jconsole *
- jsse:jsse 1.8.0_192
- local_policy:local_policy *
- localedata:localedata *
- log4j:log4j 1.2.15
- management-agent:management-agent *
- nashorn:nashorn 1.8.0_192-b01
- net.sf.jopt-simple:jopt-simple 5.0.3
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- org.apache.logging.log4j:log4j-api 2.5
- org.apache.logging.log4j:log4j-core 2.5
- org.apfloat:apfloat 1.6.3
- org.biojava:biojava3-core 3.0.7
- org.biojava:biojava3-structure 3.0.7
- org.broadinstitute.gatk.engine.CommandLineGATK:GenomeAnalysisTK *
- org.broadinstitute.gatk:gatk-engine 3.8-1
- org.broadinstitute.gatk:gatk-package-distribution 3.8-1
- org.broadinstitute.gatk:gatk-tools-protected 3.8-1
- org.broadinstitute.gatk:gatk-tools-public 3.8-1
- org.broadinstitute.gatk:gatk-utils 3.8-1
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- org.reflections:reflections 0.9.9-RC1
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- org.snpeff.SnpEff:snpEff *
- org.usadellab.trimmomatic.Trimmomatic:trimmomatic *
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- rt:rt 1.8.0_192
- sa-jdi:sa-jdi *
- sam:sam 1.103
- tools:tools *
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