Ecosyste.ms: Docker

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dmiller15/sequenza : 3.0.0

Latest release: almost 2 years ago - 118 downloads - 448 dependencies

JSON

Dependencies

BH 1.69.0-1
BiocGenerics 0.26.0
GenomeInfoDb 1.16.0
GenomeInfoDbData 1.1.0
GenomicRanges 1.32.7
IRanges 2.14.12
KernSmooth 2.23-15
MASS 7.3-51.1
Matrix 1.2-15
R6 2.4.0
RCurl 1.96-0
Rcpp 1.0.2
S4Vectors 0.18.3
XVector 0.20.0
askpass 1.1
assertthat 0.2.1
backports 1.1.4
base 3.5.1
bitops 1.0-6
boot 1.3-20
brew 1.0-6
callr 3.3.1
class 7.3-14
cli 1.1.0
clipr 0.7.0
clisymbols 1.2.0
cluster 2.0.7-1
codetools 0.2-15
commonmark 1.7
compiler 3.5.1
copynumber 1.20.0
crayon 1.3.4
curl 4.0
datasets 3.5.1
desc 1.2.0
devtools 2.1.0
digest 0.6.20
docopt 0.6.1
ellipsis 0.2.0.1
evaluate 0.14
falcon 0.2
fansi 0.4.0
foreign 0.8-71
fs 1.3.1
getopt 1.20.3
gh 1.0.1
git2r 0.26.1
glue 1.3.0
glue 1.3.1
grDevices 3.5.1
graphics 3.5.1
grid 3.5.1
hms 0.5.0
httr 1.4.1
ini 0.3.1
iotools 0.2-5
jsonlite 1.6
lattice 0.20-38
littler 0.3.5
magrittr 1.5
memoise 1.1.0
methods 3.5.1
mgcv 1.8-25
mime 0.7
nlme 3.1-137
nnet 7.3-12
openssl 1.4.1
optparse 1.7.1
parallel 3.5.1
pbapply 1.4-1
pillar 1.4.2
pkgbuild 1.0.4
pkgconfig 2.0.2
pkgload 1.0.2
praise 1.0.0
prettyunits 1.0.2
processx 3.4.1
ps 1.3.0
purrr 0.3.2
rcmdcheck 1.3.3
readr 1.3.1
remotes 2.1.0
rlang 0.4.0
roxygen2 6.1.1
rpart 4.1-13
rprojroot 1.3-2
rstudioapi 0.10
seqminer 7.1
sequenza 3.0.0
sessioninfo 1.1.1
spatial 7.3-11
splines 3.5.1
squash 1.0.8
stats4 3.5.1
stats 3.5.1
stringi 1.2.4
stringr 1.3.1
survival 2.43-1
sys 3.2
tcltk 3.5.1
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 2.2.1
tibble 2.1.3
tools 3.5.1
translations 3.5.1
usethis 1.5.1
utf8 1.1.4
utils 3.5.1
vctrs 0.2.0
whisker 0.3-2
withr 2.1.2
xml2 1.2.2
xopen 1.0.0
yaml 2.2.0
zeallot 0.1.0
zlibbioc 1.26.0

debian/adduser 3.118
debian/apt 1.7.0
debian/base-files 10.1
debian/base-passwd 3.5.45
debian/bash 4.4.18-3.1
debian/binutils-common 2.31.1-7
debian/binutils-x86-64-linux-gnu 2.31.1-7
debian/binutils 2.31.1-7
debian/bsdutils 1:2.32.1-0.1
debian/build-essential 12.5
debian/bwa 0.7.17-3
debian/bzip2 1.0.6-9
debian/ca-certificates 20170717
debian/coreutils 8.30-1
debian/cpp-8 8.2.0-9
debian/cpp 4:8.2.0-2
debian/dash 0.5.10.2-1
debian/debconf 1.5.69
debian/debian-archive-keyring 2018.1
debian/debianutils 4.8.6
debian/diffutils 1:3.6-1
debian/dpkg-dev 1.19.2
debian/dpkg 1.19.2
debian/e2fsprogs 1.44.4-2
debian/ed 1.14.2-2
debian/fdisk 2.32.1-0.1
debian/findutils 4.6.0 git 20181018-1
debian/fontconfig-config 2.13.1-2
debian/fontconfig 2.13.1-2
debian/fonts-dejavu-core 2.37-1
debian/fonts-texgyre 20180621-2
debian/g -8 8.2.0-9
debian/g 4:8.2.0-2
debian/gcc-8-base 8.2.0-9
debian/gcc-8 8.2.0-9
debian/gcc 4:8.2.0-2
debian/gfortran-8 8.2.0-9
debian/gfortran 4:8.2.0-2
debian/gir1.2-glib-2.0 1.58.0-1
debian/gir1.2-harfbuzz-0.0 2.1.1-1 b1
debian/gpgv 2.2.10-3
debian/grep 3.1-2
debian/gzip 1.9-2.1
debian/hostname 3.21
debian/icu-devtools 63.1-4
debian/init-system-helpers 1.55
debian/iproute2 4.18.0-2
debian/iputils-ping 3:20180629-2
debian/less 487-0.1 b1
debian/libacl1 2.2.52-3 b1
debian/libapt-pkg5.0 1.7.0
debian/libasan5 8.2.0-9
debian/libatomic1 8.2.0-9
debian/libattr1 1:2.4.47-2 b2
debian/libaudit-common 1:2.8.4-2
debian/libaudit1 1:2.8.4-2
debian/libbinutils 2.31.1-7
debian/libblas-dev 3.8.0-1 b1
debian/libblas3 3.8.0-1 b1
debian/libblkid1 2.32.1-0.1
debian/libbsd0 0.9.1-1
debian/libbz2-1.0 1.0.6-9
debian/libbz2-dev 1.0.6-9
debian/libc-bin 2.28-10
debian/libc-dev-bin 2.28-10
debian/libc-l10n 2.28-10
debian/libc6-dev 2.28-10
debian/libc6 2.28-10
debian/libcairo2 1.16.0-1
debian/libcap-ng0 0.7.9-1
debian/libcap2-bin 1:2.25-1.2
debian/libcap2 1:2.25-1.2
debian/libcc1-0 8.2.0-9
debian/libcom-err2 1.44.4-2
debian/libcurl3-gnutls 7.65.3-1
debian/libcurl4-openssl-dev 7.65.3-1
debian/libcurl4 7.65.3-1
debian/libdatrie1 0.2.12-1
debian/libdb5.3 5.3.28 dfsg1-0.2
debian/libdebconfclient0 0.245
debian/libdeflate0 1.2-1
debian/libdpkg-perl 1.19.2
debian/libelf1 0.170-0.5
debian/libexpat1-dev 2.2.7-1
debian/libexpat1 2.2.7-1
debian/libext2fs2 1.44.4-2
debian/libfdisk1 2.32.1-0.1
debian/libffi6 3.2.1-8
debian/libfontconfig1 2.13.1-2
debian/libfreetype6 2.8.1-2
debian/libfribidi0 1.0.5-3
debian/libgcc-8-dev 8.2.0-9
debian/libgcc1 1:8.2.0-9
debian/libgcrypt20 1.8.4-3
debian/libgdbm-compat4 1.18.1-1
debian/libgdbm6 1.18.1-1
debian/libgfortran-8-dev 8.2.0-9
debian/libgfortran5 8.2.0-9
debian/libgirepository-1.0-1 1.58.0-1
debian/libglib2.0-0 2.58.1-2
debian/libglib2.0-bin 2.58.1-2
debian/libglib2.0-data 2.58.1-2
debian/libglib2.0-dev-bin 2.58.1-2
debian/libglib2.0-dev 2.58.1-2
debian/libgmp10 2:6.1.2 dfsg-3
debian/libgnutls30 3.6.9-4
debian/libgomp1 8.2.0-9
debian/libgpg-error0 1.32-3
debian/libgraphite2-3 1.3.12-1
debian/libgraphite2-dev 1.3.12-1
debian/libgssapi-krb5-2 1.17-6
debian/libharfbuzz-dev 2.1.1-1 b1
debian/libharfbuzz-gobject0 2.1.1-1 b1
debian/libharfbuzz-icu0 2.1.1-1 b1
debian/libharfbuzz0b 2.1.1-1 b1
debian/libhogweed4 3.4.1-1 b1
debian/libhts2 1.9-11
debian/libice6 2:1.0.9-2
debian/libicu-dev 63.1-4
debian/libicu-le-hb-dev 1.0.3 git180724-3
debian/libicu-le-hb0 1.0.3 git180724-3
debian/libicu63 63.1-4
debian/libiculx63 63.1-4
debian/libidn2-0 2.0.5-1
debian/libisl19 0.20-2
debian/libitm1 8.2.0-9
debian/libjbig0 2.1-3.1 b2
debian/libjpeg-dev 1:1.5.2-2
debian/libjpeg62-turbo-dev 1:1.5.2-2 b1
debian/libjpeg62-turbo 1:1.5.2-2 b1
debian/libk5crypto3 1.16.1-1
debian/libkeyutils1 1.5.9-9.3
debian/libkrb5-3 1.17-6
debian/libkrb5support0 1.17-6
debian/liblapack-dev 3.8.0-1 b1
debian/liblapack3 3.8.0-1 b1
debian/libldap-2.4-2 2.4.46 dfsg-5 b1
debian/libldap-common 2.4.46 dfsg-5
debian/liblsan0 8.2.0-9
debian/liblz4-1 1.8.2-1
debian/liblzma-dev 5.2.2-1.3
debian/liblzma5 5.2.2-1.3
debian/libmnl0 1.0.4-2
debian/libmount1 2.32.1-0.1
debian/libmpc3 1.1.0-1
debian/libmpdec2 2.4.2-2
debian/libmpfr6 4.0.1-1
debian/libmpx2 8.2.0-9
debian/libncurses-dev 6.1 20181013-1
debian/libncurses5-dev 6.1 20181013-1
debian/libncurses6 6.1 20181013-1
debian/libncursesw6 6.1 20181013-1
debian/libnettle6 3.4.1-1 b1
debian/libnghttp2-14 1.34.0-1
debian/libp11-kit0 0.23.14-2
debian/libpam-modules-bin 1.1.8-3.8
debian/libpam-modules 1.1.8-3.8
debian/libpam-runtime 1.1.8-3.8
debian/libpam0g 1.1.8-3.8
debian/libpango-1.0-0 1.42.4-3
debian/libpangocairo-1.0-0 1.42.4-3
debian/libpangoft2-1.0-0 1.42.4-3
debian/libpaper-utils 1.1.24 nmu5
debian/libpaper1 1.1.24 nmu5
debian/libpcre16-3 2:8.39-11
debian/libpcre3-dev 2:8.39-11
debian/libpcre32-3 2:8.39-11
debian/libpcre3 2:8.39-11
debian/libpcrecpp0v5 2:8.39-11
debian/libperl5.28 5.28.0-3
debian/libpixman-1-0 0.34.0-2
debian/libpng-dev 1.6.34-2
debian/libpng16-16 1.6.34-2
debian/libpsl5 0.20.2-2
debian/libpython-dev 2.7.16-1
debian/libpython-stdlib 2.7.16-1
debian/libpython2-dev 2.7.16-1
debian/libpython2-stdlib 2.7.16-1
debian/libpython2.7-dev 2.7.16-3
debian/libpython2.7-minimal 2.7.16-3
debian/libpython2.7-stdlib 2.7.16-3
debian/libpython2.7 2.7.16-3
debian/libpython3-stdlib 3.6.7-1
debian/libpython3.6-minimal 3.6.7-1
debian/libpython3.6-stdlib 3.6.7-1
debian/libquadmath0 8.2.0-9
debian/libreadline-dev 7.0-5
debian/libreadline7 7.0-5
debian/libreadline8 8.0-2
debian/librtmp1 2.4 20151223.gitfa8646d.1-2
debian/libsasl2-2 2.1.27~rc8-1
debian/libsasl2-modules-db 2.1.27~rc8-1
debian/libseccomp2 2.3.3-3
debian/libselinux1 2.8-1 b1
debian/libsemanage-common 2.8-1
debian/libsemanage1 2.8-1 b1
debian/libsepol1 2.8-1
debian/libsm6 2:1.2.2-1 b3
debian/libsmartcols1 2.32.1-0.1
debian/libsqlite3-0 3.25.3-1
debian/libss2 1.44.4-2
debian/libssh2-1 1.8.0-2
debian/libssl-dev 1.1.1c-1
debian/libssl1.1 1.1.1c-1
debian/libstdc -8-dev 8.2.0-9
debian/libstdc 6 8.2.0-9
debian/libsystemd0 239-11
debian/libtasn1-6 4.14-2
debian/libtcl8.6 8.6.8 dfsg-4
debian/libthai-data 0.1.28-1
debian/libthai0 0.1.28-1
debian/libtiff5 4.0.9 git181026-1
debian/libtinfo6 6.1 20181013-1
debian/libtk8.6 8.6.8-4
debian/libtsan0 8.2.0-9
debian/libubsan1 8.2.0-9
debian/libudev1 239-11
debian/libunistring2 0.9.10-1
debian/libuuid1 2.32.1-0.1
debian/libwebp6 0.6.1-2
debian/libx11-6 2:1.6.7-1
debian/libx11-data 2:1.6.7-1
debian/libxau6 1:1.0.8-1 b2
debian/libxcb-render0 1.13.1-1
debian/libxcb-shm0 1.13.1-1
debian/libxcb1 1.13.1-1
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1 b2
debian/libxft2 2.3.2-2
debian/libxml2-dev 2.9.4 dfsg1-7 b3
debian/libxml2 2.9.4 dfsg1-7 b3
debian/libxmuu1 2:1.1.2-2
debian/libxrender1 1:0.9.10-1
debian/libxss1 1:1.2.3-1
debian/libxt6 1:1.1.5-1
debian/libxtables12 1.8.1-2
debian/libzstd1 1.3.5 dfsg-1
debian/linux-libc-dev 4.18.10-2 b1
debian/littler 0.3.5-1
debian/locales 2.28-10
debian/login 1:4.5-1.1
debian/lsb-base 9.20170808
debian/make 4.2.1-1.2
debian/mawk 1.3.3-17 b3
debian/mime-support 3.61
debian/mount 2.32.1-0.1
debian/ncurses-base 6.1 20181013-1
debian/ncurses-bin 6.1 20181013-1
debian/openssl 1.1.1-2
debian/passwd 1:4.5-1.1
debian/patch 2.7.6-3
debian/perl-base 5.28.0-3
debian/perl-modules-5.28 5.28.0-3
debian/perl 5.28.0-3
debian/pkg-config 0.29-4 b1
debian/python-dev 2.7.16-1
debian/python-minimal 2.7.16-1
debian/python-pip-whl 18.1-5
debian/python-pip 18.1-5
debian/python-pkg-resources 41.0.1-1
debian/python-setuptools 41.0.1-1
debian/python2-dev 2.7.16-1
debian/python2-minimal 2.7.16-1
debian/python2.7-dev 2.7.16-3
debian/python2.7-minimal 2.7.16-3
debian/python2.7 2.7.16-3
debian/python2 2.7.16-1
debian/python3-distutils 3.7.1-1
debian/python3-lib2to3 3.7.1-1
debian/python3-minimal 3.6.7-1
debian/python3.6-minimal 3.6.7-1
debian/python3.6 3.6.7-1
debian/python3 3.6.7-1
debian/python 2.7.16-1
debian/r-base-core 3.5.1-1 b2
debian/r-base-dev 3.5.1-1
debian/r-base 3.5.1-1
debian/r-cran-boot 1.3-20-2
debian/r-cran-class 7.3-14-2 b2
debian/r-cran-cluster 2.0.7-1-1 b3
debian/r-cran-codetools 0.2-15-2
debian/r-cran-foreign 0.8.71-1
debian/r-cran-glue 1.3.0-1
debian/r-cran-kernsmooth 2.23-15-3 b4
debian/r-cran-lattice 0.20-38-1
debian/r-cran-littler 0.3.5-1 b1
debian/r-cran-magrittr 1.5-5
debian/r-cran-mass 7.3-51.1-1
debian/r-cran-matrix 1.2-15-1
debian/r-cran-mgcv 1.8-25-1
debian/r-cran-nlme 3.1.137-1 b3
debian/r-cran-nnet 7.3-12-2 b2
debian/r-cran-rpart 4.1-13-1 b1
debian/r-cran-spatial 7.3-11-2 b2
debian/r-cran-stringi 1.2.4-2
debian/r-cran-stringr 1.3.1-2
debian/r-cran-survival 2.43-1-1
debian/r-recommended 3.5.1-1
debian/readline-common 7.0-5
debian/samtools 1.9-5
debian/sed 4.5-2
debian/sensible-utils 0.0.12
debian/sysvinit-utils 2.88dsf-59.11
debian/tabix 1.9-11
debian/tar 1.30 dfsg-2
debian/tzdata 2018g-1
debian/ucf 3.0038
debian/unzip 6.0-21
debian/util-linux 2.32.1-0.1
debian/vim-common 2:8.1.0320-1
debian/vim-tiny 2:8.1.0320-1 b1
debian/wget 1.19.5-2
debian/x11-common 1:7.7 19
debian/xauth 1:1.0.10-1
debian/xdg-utils 1.1.3-1
debian/xxd 2:8.1.0320-1 b1
debian/xz-utils 5.2.2-1.3
debian/zip 3.0-11 b1
debian/zlib1g-dev 1:1.2.11.dfsg-1
debian/zlib1g 1:1.2.11.dfsg-1

bash 4.4.23

argparse 1.2.1
bio-pype 1.0.1
pip 18.1
psutil 5.6.3
sequenza-utils 2.1.9999b1
setuptools 41.0.1
wsgiref 0.1.2