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Package Usage : deb : debian/samtools

Explore the latest package usage data for debian/samtools in the deb ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 72
Total downloads: 788,069

More details on packages.ecosyste.ms - JSON

biocontainers/samtools 1.3.1

Tools for manipulating next-generation sequencing data

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: over 7 years ago - 578,711 downloads - 295 dependencies
qdidiscoveryservices/anacoda3_pylibs latest

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: over 4 years ago - 21,559 downloads - 1,304 dependencies
biocontainers/bio-tradis v1.4.1dfsg-1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 9,846 downloads - 534 dependencies
biocontainers/ariba v2.13.3ds-1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 9,510 downloads - 365 dependencies
biocontainers/bioperl v1.7.2-3-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 9,380 downloads - 680 dependencies
biocontainers/bioperl-run v1.7.2-4-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 9,311 downloads - 680 dependencies
biocontainers/gbrowse-calign v2.56dfsg-4b1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,963 downloads - 712 dependencies
biocontainers/circlator v1.5.5-3-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,605 downloads - 353 dependencies
biocontainers/gbrowse-data v2.56dfsg-4-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,826 downloads - 712 dependencies
biocontainers/unicycler v0.4.7dfsg-2-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,551 downloads - 703 dependencies
biocontainers/cct v20170919dfsg-1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,519 downloads - 853 dependencies
biocontainers/gbrowse v2.56dfsg-4-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,477 downloads - 711 dependencies
biocontainers/sga v0.10.15-4-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,621 downloads - 397 dependencies
biocontainers/grinder v0.5.4-5-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,511 downloads - 683 dependencies
biocontainers/spades v3.13.0dfsg2-2-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,450 downloads - 330 dependencies
biocontainers/giira v0.0.20140625-2-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,093 downloads - 312 dependencies
biocontainers/pbbamtools v0.19.0dfsg-4-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,847 downloads - 297 dependencies
biocontainers/pymummer v0.10.3-2-deb-py3_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,096 downloads - 306 dependencies
biocontainers/srst2 v0.2.0-6-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,741 downloads - 561 dependencies
biocontainers/murasaki v1.68.6-8b1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,083 downloads - 960 dependencies
biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 8,008 downloads - 831 dependencies
biocontainers/velvetoptimiser v2.2.6-2-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,935 downloads - 682 dependencies
biocontainers/seqsero v1.0.1dfsg-1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,881 downloads - 328 dependencies
biocontainers/murasaki-mpi v1.68.6-8b1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,653 downloads - 960 dependencies
biocontainers/pbsuite v15.8.24dfsg-3-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,589 downloads - 399 dependencies
biocontainers/pbhoney v15.8.24dfsg-3-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,605 downloads - 398 dependencies
biocontainers/stacks v2.2dfsg-1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,592 downloads - 312 dependencies
biocontainers/murasaki-common v1.68.6-8-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,646 downloads - 954 dependencies
biocontainers/paleomix v1.2.13.3-1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,523 downloads - 1,167 dependencies
biocontainers/psortb v3.0.6dfsg-1b1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,806 downloads - 689 dependencies
biocontainers/stacks-web v2.2dfsg-1-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,517 downloads - 381 dependencies
biocontainers/roary v3.12.0dfsg-2-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,543 downloads - 1,110 dependencies
biocontainers/smalr v1.1dfsg-2-deb_cv1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 6 years ago - 7,780 downloads - 551 dependencies
qdidiscoveryservices/crispresso2-biopy 2.3.0

Image for running largeAggregrate branch of CRISPResso2

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: over 1 year ago - 8,803 downloads - 181 dependencies
qdidiscoveryservices/bwa_samtools_biobambam2 2.0

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: over 1 year ago - 2,673 downloads - 1,561 dependencies
qdidiscoveryservices/trust4_pip v1.0.7

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: about 3 years ago - 1,475 downloads - 1,335 dependencies
qdidiscoveryservices/crispresso2 2.1.3

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 4 years ago - 546 downloads - 220 dependencies
qdidiscoveryservices/anaconda_biopy latest

  • version: 1.11-1
  • arch: amd64
  • distro: debian-11
Latest release: over 3 years ago - 348 downloads - 993 dependencies
schmitzr1984/bwa latest

  • version: 1.11-1
  • arch: amd64
  • distro: debian-11
Latest release: over 2 years ago - 366 downloads - 145 dependencies
doejgi/synbioqc-pbj 3.3.3

  • version: 1.16.1-1
  • arch: amd64
  • distro: debian-12
Latest release: 5 months ago - 974 downloads - 1,105 dependencies
doejgi/synbioqc-dual_barcode 1.3.9

version of SynBioQC PacBio sequence validation pipeline for highly similar synthetic constructs

  • version: 1.16.1-1
  • arch: amd64
  • distro: debian-12
Latest release: about 1 year ago - 967 downloads - 1,113 dependencies
biocontainers/predictprotein v1.1.07-2-deb_cv1

  • version: 1.3.1-3
  • arch: amd64
  • distro: debian-9
Latest release: over 7 years ago - 480 downloads - 650 dependencies
dmiller15/sequenza 3.0.0

  • version: 1.9-5
  • arch: amd64
  • distro: debian
Latest release: over 2 years ago - 133 downloads - 448 dependencies
kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

  • version: 1.3.1-3
  • arch: amd64
  • distro: debian-9
Latest release: almost 5 years ago - 114 downloads - 1,468 dependencies
biocontainers/smrtanalysis v020161126-deb_cv1

  • version: 1.3.1-3
  • arch: amd64
  • distro: debian-9
Latest release: over 7 years ago - 105 downloads - 386 dependencies
doejgi/synbioqc-env 6.1.2

  • version: 1.16.1-1
  • arch: amd64
  • distro: debian-12
Latest release: about 1 year ago - 164 downloads - 1,083 dependencies
vanessa/cseq latest

a sequence analysis workflow for low-input nanopore sequencing

  • version: 1.3.1-3
  • arch: amd64
  • distro: debian-9
Latest release: over 7 years ago - 99 downloads - 265 dependencies
qdidiscoveryservices/sentieon-plus 202010.03

Sentieon with additional tools (e.g. SAMtools)

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: over 3 years ago - 62 downloads - 158 dependencies
vanessa/example.scif latest

scientific filesystem container builder example

  • version: 1.3.1-3
  • arch: amd64
  • distro: debian-9
Latest release: about 7 years ago - 47 downloads - 187 dependencies
kcapd/wings-genomics-full latest

  • version: 1.3.1-3
  • arch: amd64
  • distro: debian-9
Latest release: over 4 years ago - 43 downloads - 1,502 dependencies
dhspence/gtc2vcf latest

  • version: 1.3.1-3
  • arch: amd64
  • distro: debian-9
Latest release: almost 6 years ago - 50 downloads - 161 dependencies
chriswyatt/bioseqio latest

  • version: 1.11-1
  • arch: amd64
  • distro: debian-11
Latest release: over 2 years ago - 46 downloads - 891 dependencies
theosanderson/deeperseq latest

  • version: 1.11-1
  • arch: amd64
  • distro: debian-11
Latest release: over 2 years ago - 116 downloads - 341 dependencies
lemoniada/test pipeline

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: over 2 years ago - 107 downloads - 1,181 dependencies
davelabhub/msi 122722a

  • version: 1.13-4
  • arch: amd64
  • distro: debian
Latest release: over 2 years ago - 26 downloads - 360 dependencies
gene110/connor 0.6.1

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: over 2 years ago - 8 downloads - 590 dependencies
amirshams/spipe 1.0.7

  • version: 1.11-1
  • arch: amd64
  • distro: debian-11
Latest release: about 2 years ago - 24 downloads - 594 dependencies
sagnikbanerjee15/repeatmasker 4.1.2

  • version: 1.3.1-3
  • arch: amd64
  • distro: debian-9
Latest release: over 2 years ago - 15 downloads - 653 dependencies
trestlebiosciences/mukherjee 1.0

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: about 2 years ago - 39 downloads - 683 dependencies
npcooley/nmdctest01 1.0

  • version: 1.17-1
  • arch: amd64
  • distro: debian-12
Latest release: about 2 years ago - 21 downloads - 919 dependencies
hieutran2907/ichorcna_samtools v1

  • version: 1.11-1
  • arch: amd64
  • distro: debian
Latest release: over 2 years ago - 15 downloads - 363 dependencies
zhiliz/debian12-tools 0.1.0

  • version: 1.16.1-1
  • arch: amd64
  • distro: debian-12
Latest release: about 2 years ago - 4,837 downloads - 520 dependencies
salvacasani/methylctools latest

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: about 2 years ago - 345 downloads - 531 dependencies
polumechanos/task_qc_rna merge-pkr

  • version: 1.17-1
  • arch: amd64
  • distro: debian-12
Latest release: about 2 years ago - 241 downloads - 352 dependencies
netraa/griffin_nucleosome_profiling 2.0

  • version: 1.11-1
  • arch: amd64
  • distro: debian-11
Latest release: almost 2 years ago - 338 downloads - 249 dependencies
shahcompbio/igcaller latest

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: about 2 years ago - 167 downloads - 135 dependencies
seglh/sqvd v1.3.2

Git repo: https://git.kingspm.uk/KingsPM/sqvd

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: 3 months ago - 1,067 downloads - 2,068 dependencies
cgeorgescu/pvactools devel

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: about 2 years ago - 229 downloads - 1,182 dependencies
astrand/testinvpath abc

  • version: 1.16.1-1
  • arch: amd64
  • distro: debian-12
Latest release: almost 2 years ago - 157 downloads - 972 dependencies
39dj29dl2d9l2/vec-ven 13

  • version: 1.16.1-1
  • arch: amd64
  • distro: debian-12
Latest release: almost 2 years ago - 244 downloads - 747 dependencies
emna20/ditector v1

  • version: 1.11-1
  • arch: amd64
  • distro: debian-11
Latest release: about 2 years ago - 23 downloads - 430 dependencies
kubran/odcf_aceseqcalling v6

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: almost 2 years ago - 108 downloads - 1,103 dependencies
lpcv0309/crispresso2 latest

  • version: 1.9-4
  • arch: amd64
  • distro: debian-10
Latest release: over 2 years ago - 24 downloads - 177 dependencies
dadkhahk/spipe 1.1.2

  • version: 1.11-1
  • arch: amd64
  • distro: debian-11
Latest release: over 1 year ago - 23 downloads - 420 dependencies