Ecosyste.ms: Docker

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Package Usage : deb : debian/libhts2

Explore the latest package usage data for debian/libhts2 in the deb ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 84
Total downloads: 2,136,284

More details on packages.ecosyste.ms - JSON

biocontainers/bcftools v1.9-1-deb_cv1

variant calling and manipulating VCFs and BCFs

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 1,022,681 downloads - 120 dependencies
biocontainers/samtools v1.9-4-deb_cv1

Tools for manipulating next-generation sequencing data

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 494,627 downloads - 295 dependencies
qdidiscoveryservices/anacoda3_pylibs latest

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 3 years ago - 21,530 downloads - 1,304 dependencies
biocontainers/pysam v0.15.2ds-2-deb-py3_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 18,607 downloads - 132 dependencies
biocontainers/cyvcf2 v0.10.4-1-deb-py3_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 17,047 downloads - 138 dependencies
biocontainers/kineticstools v0.6.1git20180425.27a1878-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 15,790 downloads - 215 dependencies
biocontainers/freebayes v1.2.0-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 16,147 downloads - 178 dependencies
biocontainers/pbh5tools v0.8.0git20170929.58d54ffdfsg-1-deb-py2_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 15,488 downloads - 147 dependencies
biocontainers/pbgenomicconsensus v2.3.2-5-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 15,475 downloads - 165 dependencies
biocontainers/pbalign v0.3.2-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 15,110 downloads - 172 dependencies
biocontainers/bio-eagle v2.4.1-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 10,611 downloads - 123 dependencies
biocontainers/augustus v3.3.2dfsg-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 10,490 downloads - 122 dependencies
biocontainers/bio-tradis v1.4.1dfsg-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 9,824 downloads - 534 dependencies
biocontainers/ariba v2.13.3ds-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 9,487 downloads - 365 dependencies
biocontainers/arden v1.0-4-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 9,461 downloads - 229 dependencies
biocontainers/bioperl v1.7.2-3-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 9,360 downloads - 680 dependencies
biocontainers/bioperl-run v1.7.2-4-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 9,290 downloads - 680 dependencies
biocontainers/blasr v5.3.2dfsg-1.1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 9,384 downloads - 125 dependencies
biocontainers/cnvkit v0.9.5-3-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 9,436 downloads - 493 dependencies
biocontainers/unanimity v3.3.0dfsg-2.1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 5 years ago - 9,315 downloads - 115 dependencies
biocontainers/gbrowse-calign v2.56dfsg-4b1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,941 downloads - 712 dependencies
biocontainers/crac v2.5.0dfsg-3-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,879 downloads - 117 dependencies
biocontainers/fastqtl v2.184dfsg-6b1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,931 downloads - 406 dependencies
biocontainers/circlator v1.5.5-3-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,564 downloads - 353 dependencies
biocontainers/gbrowse-data v2.56dfsg-4-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,813 downloads - 712 dependencies
biocontainers/unicycler v0.4.7dfsg-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,525 downloads - 703 dependencies
biocontainers/gasic v0.0.r19-4-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,780 downloads - 251 dependencies
biocontainers/cct v20170919dfsg-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,490 downloads - 853 dependencies
biocontainers/gbrowse v2.56dfsg-4-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,457 downloads - 711 dependencies
biocontainers/fitgcp v0.0.20150429-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,378 downloads - 192 dependencies
biocontainers/delly v0.8.1-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,368 downloads - 119 dependencies
biocontainers/sga v0.10.15-4-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,576 downloads - 397 dependencies
biocontainers/grinder v0.5.4-5-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,492 downloads - 683 dependencies
biocontainers/hinge v0.5.0-4-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,367 downloads - 338 dependencies
biocontainers/spades v3.13.0dfsg2-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,143 downloads - 330 dependencies
biocontainers/giira v0.0.20140625-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,060 downloads - 312 dependencies
biocontainers/pbbamtools v0.19.0dfsg-4-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,808 downloads - 297 dependencies
biocontainers/pymummer v0.10.3-2-deb-py3_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 8,086 downloads - 306 dependencies
biocontainers/srst2 v0.2.0-6-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,719 downloads - 561 dependencies
biocontainers/murasaki v1.68.6-8b1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,975 downloads - 960 dependencies
biocontainers/nanopolish v0.11.0-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,700 downloads - 175 dependencies
biocontainers/pbcommand v1.1.1-1-deb-py2_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,936 downloads - 161 dependencies
biocontainers/pbdagcon v0.3git20161121.0000000ds-1.1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,925 downloads - 125 dependencies
biocontainers/pbcore v1.6.5dfsg-1-deb-py2_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,899 downloads - 146 dependencies
biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,963 downloads - 831 dependencies
biocontainers/pbbarcode v0.8.0-5-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,922 downloads - 147 dependencies
biocontainers/pbbanana v15.8.24dfsg-3-deb-py2_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,892 downloads - 332 dependencies
biocontainers/nanook v1.33dfsg-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,924 downloads - 733 dependencies
biocontainers/velvetoptimiser v2.2.6-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,905 downloads - 682 dependencies
biocontainers/rsem v1.3.1dfsg-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,669 downloads - 417 dependencies
biocontainers/seqsero v1.0.1dfsg-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,865 downloads - 328 dependencies
biocontainers/pbjelly v15.8.24dfsg-3-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,582 downloads - 331 dependencies
biocontainers/murasaki-mpi v1.68.6-8b1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,579 downloads - 960 dependencies
biocontainers/pbsuite v15.8.24dfsg-3-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,577 downloads - 399 dependencies
biocontainers/pbhoney v15.8.24dfsg-3-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,576 downloads - 398 dependencies
biocontainers/stacks v2.2dfsg-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,562 downloads - 312 dependencies
biocontainers/murasaki-common v1.68.6-8-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,560 downloads - 954 dependencies
biocontainers/pbsuite-utils v15.8.24dfsg-3-deb-py2_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,558 downloads - 135 dependencies
biocontainers/pybedtools v0.8.0-1-deb-py3_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,817 downloads - 134 dependencies
biocontainers/pybedtools-bin v0.8.0-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,797 downloads - 135 dependencies
biocontainers/segemehl v0.3.4-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,798 downloads - 116 dependencies
biocontainers/paleomix v1.2.13.3-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,507 downloads - 1,167 dependencies
biocontainers/psortb v3.0.6dfsg-1b1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,791 downloads - 689 dependencies
biocontainers/stacks-web v2.2dfsg-1-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,502 downloads - 381 dependencies
biocontainers/roary v3.12.0dfsg-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,506 downloads - 1,110 dependencies
biocontainers/smalr v1.1dfsg-2-deb_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,741 downloads - 551 dependencies
biocontainers/sqt v0.8.0-3-deb-py3_cv1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 5 years ago - 7,401 downloads - 242 dependencies
qdidiscoveryservices/crispresso2-biopy 2.2.12-test

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 1 year ago - 5,160 downloads - 181 dependencies
qdidiscoveryservices/bwa_samtools_biobambam2 latest

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 3 years ago - 1,678 downloads - 1,561 dependencies
qdidiscoveryservices/trust4_pip v1.0.7

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 2 years ago - 1,402 downloads - 1,335 dependencies
nextgenusfs/funannotate-slim v1.8.15

Base funannotate image (no databases)

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 1 year ago - 630 downloads - 261 dependencies
qdidiscoveryservices/crispresso2 2.1.3.1

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: about 3 years ago - 515 downloads - 220 dependencies
dmiller15/sequenza 3.0.0

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian
Latest release: almost 2 years ago - 118 downloads - 448 dependencies
qdidiscoveryservices/sentieon-plus 202010.03

Sentieon with additional tools (e.g. SAMtools)

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: almost 3 years ago - 61 downloads - 158 dependencies
ddiazescandon/funannotate 1.8.15

nextgenusfs/funannotate:latest with eukaryta db, phyml for dn/ds and a conda installation

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 1 year ago - 52 downloads - 338 dependencies
lemoniada/test pipeline

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: almost 2 years ago - 13 downloads - 1,181 dependencies
gene110/connor 0.6.1

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: almost 2 years ago - 8 downloads - 590 dependencies
yingxiaomai/genomeassess v0

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 1 year ago - 10 downloads - 454 dependencies
trestlebiosciences/mukherjee 1.0

  • version: 1.9-11
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 1 year ago - 8 downloads - 683 dependencies
salvacasani/methylctools latest

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 1 year ago - 230 downloads - 531 dependencies
shahcompbio/igcaller latest

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 1 year ago - 157 downloads - 135 dependencies
seglh/sqvd v1.3.0-RC4

Git repo: https://git.kingspm.uk/KingsPM/sqvd

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: 11 months ago - 176 downloads - 2,068 dependencies
cgeorgescu/pvactools devel

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 1 year ago - 93 downloads - 1,182 dependencies
kubran/odcf_aceseqcalling v6

  • version: 1.9-12~deb10u1
  • arch: amd64
  • upstream: htslib
  • distro: debian-10
Latest release: over 1 year ago - 15 downloads - 1,103 dependencies