Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
broadinstitute/viral-ngs : latest
See: https://viral-ngs.readthedocs.io/en/latest/
Latest release: over 5 years ago - 25,404 downloads - 417 dependencies
JSONDependencies
- KernSmooth 2.23-15
- MASS 7.3-51.4
- Matrix 1.2-17
- R6 2.4.0
- RColorBrewer 1.1-2
- Rcpp 1.0.2
- assertthat 0.2.1
- backports 1.1.5
- base 3.5.1
- bitops 1.0-6
- caTools 1.17.1.2
- cli 1.1.0
- colorspace 1.4-1
- compiler 3.5.1
- crayon 1.3.4
- datasets 3.5.1
- digest 0.6.21
- ellipsis 0.3.0
- fansi 0.4.0
- gdata 2.18.0
- ggplot2 3.2.1
- glue 1.3.1
- gplots 3.0.1.1
- grDevices 3.5.1
- graphics 3.5.1
- grid 3.5.1
- gsalib 2.1
- gtable 0.3.0
- gtools 3.8.1
- labeling 0.3
- lattice 0.20-38
- lazyeval 0.2.2
- magrittr 1.5
- methods 3.5.1
- mgcv 1.8-29
- munsell 0.5.0
- nlme 3.1-141
- parallel 3.5.1
- pillar 1.4.2
- pkgconfig 2.0.3
- plyr 1.8.4
- reshape2 1.4.3
- reshape 0.8.8
- rlang 0.4.0
- scales 1.0.0
- splines 3.5.1
- stats4 3.5.1
- stats 3.5.1
- stringi 1.4.3
- stringr 1.4.0
- tcltk 3.5.1
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- tibble 2.1.3
- tools 3.5.1
- translations 3.5.1
- utf8 1.1.4
- utils 3.5.1
- vctrs 0.2.0
- viridisLite 0.3.0
- withr 2.1.2
- zeallot 0.1.0
- ubuntu/adduser 3.116ubuntu1
- ubuntu/apt 1.6.11
- ubuntu/awscli 1.14.44-1ubuntu1
- ubuntu/base-files 10.1ubuntu2.4
- ubuntu/base-passwd 3.5.44
- ubuntu/bash 4.4.18-2ubuntu1.2
- ubuntu/bsdutils 1:2.31.1-0.4ubuntu3.3
- ubuntu/bzip2 1.0.6-8.1ubuntu0.2
- ubuntu/ca-certificates 20180409
- ubuntu/coreutils 8.28-1ubuntu1
- ubuntu/curl 7.58.0-2ubuntu3.7
- ubuntu/dash 0.5.8-2.10
- ubuntu/debconf 1.5.66ubuntu1
- ubuntu/debianutils 4.8.4
- ubuntu/diffutils 1:3.6-1
- ubuntu/dirmngr 2.2.4-1ubuntu1.2
- ubuntu/distro-info-data 0.37ubuntu0.5
- ubuntu/docutils-common 0.14 dfsg-3
- ubuntu/dpkg 1.19.0.5ubuntu2.1
- ubuntu/e2fsprogs 1.44.1-1ubuntu1.1
- ubuntu/fdisk 2.31.1-0.4ubuntu3.3
- ubuntu/findutils 4.6.0 git 20170828-2
- ubuntu/fonts-dejavu-core 2.37-1
- ubuntu/fonts-dejavu-extra 2.37-1
- ubuntu/fonts-dejavu 2.37-1
- ubuntu/gcc-8-base 8.3.0-6ubuntu1~18.04.1
- ubuntu/git-man 1:2.17.1-1ubuntu0.4
- ubuntu/git 1:2.17.1-1ubuntu0.4
- ubuntu/gnupg-l10n 2.2.4-1ubuntu1.2
- ubuntu/gnupg-utils 2.2.4-1ubuntu1.2
- ubuntu/gnupg 2.2.4-1ubuntu1.2
- ubuntu/google-cloud-sdk 253.0.0-0
- ubuntu/gpg-agent 2.2.4-1ubuntu1.2
- ubuntu/gpg-wks-client 2.2.4-1ubuntu1.2
- ubuntu/gpg-wks-server 2.2.4-1ubuntu1.2
- ubuntu/gpg 2.2.4-1ubuntu1.2
- ubuntu/gpgconf 2.2.4-1ubuntu1.2
- ubuntu/gpgsm 2.2.4-1ubuntu1.2
- ubuntu/gpgv 2.2.4-1ubuntu1.2
- ubuntu/grep 3.1-2
- ubuntu/gzip 1.6-5ubuntu1
- ubuntu/hostname 3.20
- ubuntu/init-system-helpers 1.51
- ubuntu/lbzip2 2.5-2
- ubuntu/less 487-0.1
- ubuntu/libacl1 2.2.52-3build1
- ubuntu/libapt-pkg5.0 1.6.11
- ubuntu/libasn1-8-heimdal 7.5.0 dfsg-1
- ubuntu/libassuan0 2.5.1-2
- ubuntu/libattr1 1:2.4.47-2build1
- ubuntu/libaudit-common 1:2.8.2-1ubuntu1
- ubuntu/libaudit1 1:2.8.2-1ubuntu1
- ubuntu/libblkid1 2.31.1-0.4ubuntu3.3
- ubuntu/libbz2-1.0 1.0.6-8.1ubuntu0.2
- ubuntu/libc-bin 2.27-3ubuntu1
- ubuntu/libc6 2.27-3ubuntu1
- ubuntu/libcap-ng0 0.7.7-3.1
- ubuntu/libcom-err2 1.44.1-1ubuntu1.1
- ubuntu/libcurl3-gnutls 7.58.0-2ubuntu3.7
- ubuntu/libcurl4 7.58.0-2ubuntu3.7
- ubuntu/libdb5.3 5.3.28-13.1ubuntu1.1
- ubuntu/libdebconfclient0 0.213ubuntu1
- ubuntu/liberror-perl 0.17025-1
- ubuntu/libexpat1 2.2.5-3ubuntu0.1
- ubuntu/libext2fs2 1.44.1-1ubuntu1.1
- ubuntu/libfdisk1 2.31.1-0.4ubuntu3.3
- ubuntu/libffi6 3.2.1-8
- ubuntu/libgcc1 1:8.3.0-6ubuntu1~18.04.1
- ubuntu/libgcrypt20 1.8.1-4ubuntu1.1
- ubuntu/libgdbm-compat4 1.14.1-6
- ubuntu/libgdbm5 1.14.1-6
- ubuntu/libgmp10 2:6.1.2 dfsg-2
- ubuntu/libgnutls30 3.5.18-1ubuntu1.1
- ubuntu/libgpg-error0 1.27-6
- ubuntu/libgpm2 1.20.7-5
- ubuntu/libgssapi-krb5-2 1.16-2ubuntu0.1
- ubuntu/libgssapi3-heimdal 7.5.0 dfsg-1
- ubuntu/libhcrypto4-heimdal 7.5.0 dfsg-1
- ubuntu/libheimbase1-heimdal 7.5.0 dfsg-1
- ubuntu/libheimntlm0-heimdal 7.5.0 dfsg-1
- ubuntu/libhogweed4 3.4-1
- ubuntu/libhx509-5-heimdal 7.5.0 dfsg-1
- ubuntu/libidn2-0 2.0.4-1.1build2
- ubuntu/libk5crypto3 1.16-2ubuntu0.1
- ubuntu/libkeyutils1 1.5.9-9.2ubuntu2
- ubuntu/libkrb5-26-heimdal 7.5.0 dfsg-1
- ubuntu/libkrb5-3 1.16-2ubuntu0.1
- ubuntu/libkrb5support0 1.16-2ubuntu0.1
- ubuntu/libksba8 1.3.5-2
- ubuntu/libldap-2.4-2 2.4.45 dfsg-1ubuntu1.2
- ubuntu/libldap-common 2.4.45 dfsg-1ubuntu1.2
- ubuntu/liblz4-1 0.0~r131-2ubuntu3
- ubuntu/liblz4-tool 0.0~r131-2ubuntu3
- ubuntu/liblzma5 5.2.2-1.3
- ubuntu/libmount1 2.31.1-0.4ubuntu3.3
- ubuntu/libmpdec2 2.4.2-1ubuntu1
- ubuntu/libncurses5 6.1-1ubuntu1.18.04
- ubuntu/libncursesw5 6.1-1ubuntu1.18.04
- ubuntu/libnettle6 3.4-1
- ubuntu/libnghttp2-14 1.30.0-1ubuntu1
- ubuntu/libnpth0 1.5-3
- ubuntu/libp11-kit0 0.23.9-2
- ubuntu/libpam-modules-bin 1.1.8-3.6ubuntu2.18.04.1
- ubuntu/libpam-modules 1.1.8-3.6ubuntu2.18.04.1
- ubuntu/libpam-runtime 1.1.8-3.6ubuntu2.18.04.1
- ubuntu/libpam0g 1.1.8-3.6ubuntu2.18.04.1
- ubuntu/libpcre3 2:8.39-9
- ubuntu/libperl5.26 5.26.1-6ubuntu0.3
- ubuntu/libpopt0 1.16-11
- ubuntu/libprocps6 2:3.3.12-3ubuntu1.1
- ubuntu/libpsl5 0.19.1-5build1
- ubuntu/libpython-stdlib 2.7.15~rc1-1
- ubuntu/libpython2.7-minimal 2.7.15-4ubuntu4~18.04
- ubuntu/libpython2.7-stdlib 2.7.15-4ubuntu4~18.04
- ubuntu/libpython3-stdlib 3.6.7-1~18.04
- ubuntu/libpython3.6-minimal 3.6.8-1~18.04.1
- ubuntu/libpython3.6-stdlib 3.6.8-1~18.04.1
- ubuntu/libpython3.6 3.6.8-1~18.04.1
- ubuntu/libreadline7 7.0-3
- ubuntu/libroken18-heimdal 7.5.0 dfsg-1
- ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-1
- ubuntu/libsasl2-2 2.1.27~101-g0780600 dfsg-3ubuntu2
- ubuntu/libsasl2-modules-db 2.1.27~101-g0780600 dfsg-3ubuntu2
- ubuntu/libseccomp2 2.4.1-0ubuntu0.18.04.2
- ubuntu/libselinux1 2.7-2build2
- ubuntu/libsemanage-common 2.7-2build2
- ubuntu/libsemanage1 2.7-2build2
- ubuntu/libsepol1 2.7-1
- ubuntu/libsmartcols1 2.31.1-0.4ubuntu3.3
- ubuntu/libsqlite3-0 3.22.0-1ubuntu0.1
- ubuntu/libss2 1.44.1-1ubuntu1.1
- ubuntu/libssl1.1 1.1.1-1ubuntu2.1~18.04.3
- ubuntu/libstdc 6 8.3.0-6ubuntu1~18.04.1
- ubuntu/libsystemd0 237-3ubuntu10.24
- ubuntu/libtasn1-6 4.13-2
- ubuntu/libtinfo5 6.1-1ubuntu1.18.04
- ubuntu/libudev1 237-3ubuntu10.24
- ubuntu/libunistring2 0.9.9-0ubuntu2
- ubuntu/libuuid1 2.31.1-0.4ubuntu3.3
- ubuntu/libwind0-heimdal 7.5.0 dfsg-1
- ubuntu/libyaml-0-2 0.1.7-2ubuntu3
- ubuntu/libzstd1 1.3.3 dfsg-2ubuntu1
- ubuntu/locales 2.27-3ubuntu1
- ubuntu/login 1:4.5-1ubuntu2
- ubuntu/lsb-base 9.20170808ubuntu1
- ubuntu/lsb-release 9.20170808ubuntu1
- ubuntu/make 4.1-9.1ubuntu1
- ubuntu/mawk 1.3.3-17ubuntu3
- ubuntu/mime-support 3.60ubuntu1
- ubuntu/mount 2.31.1-0.4ubuntu3.3
- ubuntu/nano 2.9.3-2
- ubuntu/ncurses-base 6.1-1ubuntu1.18.04
- ubuntu/ncurses-bin 6.1-1ubuntu1.18.04
- ubuntu/openssl 1.1.1-1ubuntu2.1~18.04.3
- ubuntu/passwd 1:4.5-1ubuntu2
- ubuntu/perl-base 5.26.1-6ubuntu0.3
- ubuntu/perl-modules-5.26 5.26.1-6ubuntu0.3
- ubuntu/perl 5.26.1-6ubuntu0.3
- ubuntu/pigz 2.4-1
- ubuntu/pinentry-curses 1.1.0-1
- ubuntu/procps 2:3.3.12-3ubuntu1.1
- ubuntu/python-crcmod 1.7-2build4
- ubuntu/python-minimal 2.7.15~rc1-1
- ubuntu/python2.7-minimal 2.7.15-4ubuntu4~18.04
- ubuntu/python2.7 2.7.15-4ubuntu4~18.04
- ubuntu/python3-botocore 1.8.48 repack-1
- ubuntu/python3-certifi 2018.1.18-2
- ubuntu/python3-chardet 3.0.4-1
- ubuntu/python3-colorama 0.3.7-1
- ubuntu/python3-dateutil 2.6.1-1
- ubuntu/python3-docutils 0.14 dfsg-3
- ubuntu/python3-idna 2.6-1
- ubuntu/python3-jmespath 0.9.3-1ubuntu1
- ubuntu/python3-minimal 3.6.7-1~18.04
- ubuntu/python3-pkg-resources 39.0.1-2
- ubuntu/python3-pyasn1 0.4.2-3
- ubuntu/python3-requests 2.18.4-2ubuntu0.1
- ubuntu/python3-roman 2.0.0-3
- ubuntu/python3-rsa 3.4.2-1
- ubuntu/python3-s3transfer 0.1.13-1
- ubuntu/python3-six 1.11.0-2
- ubuntu/python3-urllib3 1.22-1ubuntu0.18.04.1
- ubuntu/python3-yaml 3.12-1build2
- ubuntu/python3.6-minimal 3.6.8-1~18.04.1
- ubuntu/python3.6 3.6.8-1~18.04.1
- ubuntu/python3 3.6.7-1~18.04
- ubuntu/python 2.7.15~rc1-1
- ubuntu/readline-common 7.0-3
- ubuntu/rsync 3.1.2-2.1ubuntu1
- ubuntu/sed 4.4-2
- ubuntu/sensible-utils 0.0.12
- ubuntu/sgml-base 1.29
- ubuntu/sysvinit-utils 2.88dsf-59.10ubuntu1
- ubuntu/tar 1.29b-2ubuntu0.1
- ubuntu/ttf-dejavu-core 2.37-1
- ubuntu/ttf-dejavu-extra 2.37-1
- ubuntu/ttf-dejavu 2.37-1
- ubuntu/tzdata 2019b-0ubuntu0.18.04
- ubuntu/ubuntu-keyring 2018.09.18.1~18.04.0
- ubuntu/util-linux 2.31.1-0.4ubuntu3.3
- ubuntu/vim-common 2:8.0.1453-1ubuntu1.1
- ubuntu/vim-runtime 2:8.0.1453-1ubuntu1.1
- ubuntu/vim 2:8.0.1453-1ubuntu1.1
- ubuntu/wget 1.19.4-1ubuntu2.2
- ubuntu/xml-core 0.18
- ubuntu/xxd 2:8.0.1453-1ubuntu1.1
- ubuntu/zlib1g 1:1.2.11.dfsg-0ubuntu2
- ubuntu/zstd 1.3.3 dfsg-2ubuntu1
- POpen4 0.1.4
- Platform 0.4.0
- activesupport 3.2.12
- addressable 2.3.4
- bonsai 1.4.8
- builder 3.2.0
- hpricot 0.8.6
- i18n 0.6.4
- launchy 2.3.0
- liquid 2.5.0
- maruku 0.6.1
- multi_json 1.7.3
- mustache 0.99.4
- open4 1.3.0
- rack-protection 1.5.0
- rack 1.5.2
- rake 10.0.3
- rdiscount 2.0.7.2
- ronn 0.7.3
- sass 3.2.8
- sinatra 1.4.2
- syntax 1.0.0
- tilt 1.4.0
- watch 0.1.0
- yui-compressor 0.9.6
- Jaligner:Jaligner *
- US_export_policy:US_export_policy *
- charsets:charsets *
- cisd-jhdf5:cisd-jhdf5 *
- cldrdata:cldrdata *
- com.google.guava:guava 15.0
- com.googlecode.charts4j:charts4j 1.3
- com.sun:jce 1.8.0_192
- com.sun:jce 1.8.0_92
- com.sun:sunec 1.8.0_192
- com.sun:sunec 1.8.0_92
- com.sun:sunjce_provider 1.8.0_192
- com.sun:sunjce_provider 1.8.0_92
- com.sun:sunpkcs11 1.8.0_192
- com.sun:sunpkcs11 1.8.0_92
- commons-cli:commons-cli 1.2
- commons-codec:commons-codec 1.10
- commons-io:commons-io 1.4
- commons-io:commons-io 2.4
- commons-lang:commons-lang 2.4
- commons-lang:commons-lang 2.6
- commons-logging:commons-logging 1.1.1
- dnsns:dnsns *
- dt:dt *
- jaccess:jaccess *
- java-getopt:java-getopt 1.0.13
- jbzip2:jbzip2 0.9
- jconsole:jconsole *
- jsse:jsse 1.8.0_192
- jsse:jsse 1.8.0_92
- local_policy:local_policy *
- localedata:localedata *
- log4j:log4j 1.2.15
- management-agent:management-agent *
- nashorn:nashorn 1.8.0_192-b01
- nashorn:nashorn 1.8.0_92-b15
- net.sf.jopt-simple:jopt-simple 5.0.3
- net.sf.jung:jung-algorithms 2.0.1
- net.sf.jung:jung-api 2.0.1
- net.sf.jung:jung-graph-impl 2.0.1
- org.apache.commons.collections15:collections-generic 4.01
- org.apache.commons:commons-collections4 4.3
- org.apache.commons:commons-compress 1.4.1
- org.apache.commons:commons-jexl 2.1.1
- org.apache.commons:commons-lang3 3.4
- org.apache.commons:commons-math3 3.2
- org.apache.commons:commons-math3 3.5
- org.apache.logging.log4j:log4j-api 2.5
- org.apache.logging.log4j:log4j-core 2.5
- org.apfloat:apfloat 1.6.3
- org.biojava:biojava3-core 3.0.7
- org.biojava:biojava3-structure 3.0.7
- org.eclipse.jdt.internal.jarinjarloader.JarRsrcLoader:Butterfly *
- org.eclipse.jdt.internal.jarinjarloader.JarRsrcLoader:ExitTester *
- org.snpeff.SnpEff:snpEff *
- org.usadellab.trimmomatic.Trimmomatic:trimmomatic *
- picard:picard 2.21.1-SNAPSHOT
- resources:resources 1.8.0_192
- resources:resources 1.8.0_92
- rt:rt 1.8.0_192
- rt:rt 1.8.0_92
- sa-jdi:sa-jdi *
- sam:sam 1.103
- tools:tools *
- zipfs:zipfs 1.8.0_192
- zipfs:zipfs 1.8.0_92
- jquery-ui 1.12.1
- Django 1.10.0
- PyYAML 3.11
- PyYAML 5.1
- SocksiPy-branch 1.01
- Sphinx 1.4.4
- argparse 1.2.1
- beautifulsoup4 4.4.1
- colorama 0.2.4
- coverage 3.7.1
- flake8 3.4.1
- flask 0.10.1
- future 0.16.0
- futures 2.2.0
- gnureadline 6.3.8
- idna 2.7
- jsonpickle 0.9.3
- matplotlib 2.2.4
- mock 1.0.1
- mock 2.0.0
- nose 1.3.3
- oauth2client 3.0.0
- oauth2client 4.1.3
- ordereddict 1.1
- pexpect 4.6
- pip 19.0.1
- pyopenssl 17.5.0
- pytest-cov 2.5.1
- pytest-cov 2.6.1
- pytest-forked 0.2
- pytest-randomly 1.2.1
- pytest-timeout 1.2.0
- pytest-xdist 1.20.0
- pytest 3.2.1
- pytest 3.5.1
- python-magic 0.4.6
- requests 2.20.0
- rsa 3.1.4
- setuptools 41.0.1
- setuptools 41.4.0
- simplejson 3.5.2
- simplejson 3.6.5
- six 1.10.0
- snakemake 5.6.0
- sphinx-argparse 0.1.15
- sphinx 1.2.3
- sphinx_rtd_theme 0.1.9
- unittest2 0.5.1
- websocket-client 0.53.0
- wheel 0.33.4
- xattr 0.9.6