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hoonbiolab/ccle-cga : v0.2

Latest release: almost 2 years ago - 72 downloads - 586 dependencies

JSON

Dependencies

HMM 1.0
KernSmooth 2.23-15
MASS 7.3-50
Matrix 1.2-14
Nozzle.R1 1.4-0
R6 2.4.0
RColorBrewer 1.1-2
Rcpp 1.0.1
askpass 1.1
assertthat 0.2.1
backports 1.1.4
base 3.4.4
boot 1.3-20
brew 1.0-6
callr 3.3.0
class 7.3-14
cli 1.1.0
clipr 0.6.0
clisymbols 1.2.0
cluster 2.0.7-1
codetools 0.2-15
colorspace 1.4-1
commonmark 1.7
compiler 3.4.4
crayon 1.3.4
curl 3.3
datasets 3.4.4
desc 1.2.0
devtools 2.1.0
digest 0.6.20
doMC 1.3.5
ellipsis 0.2.0.1
fansi 0.4.0
foreach 1.4.4
foreign 0.8-70
fs 1.3.1
getopt 1.20.3
ggplot2 3.2.0
gh 1.0.1
git2r 0.26.1
glue 1.3.1
grDevices 3.4.4
graphics 3.4.4
grid 3.4.4
gtable 0.3.0
httr 1.4.0
ini 0.3.1
iterators 1.0.10
jsonlite 1.6
labeling 0.3
lattice 0.20-38
lazyeval 0.2.2
magrittr 1.5
memoise 1.1.0
methods 3.4.4
mgcv 1.8-28
mime 0.7
munsell 0.5.0
naturalsort 0.1.3
nlme 3.1-137
nnet 7.3-12
numDeriv 2016.8-1.1
openssl 1.4
optparse 1.6.2
parallel 3.4.4
pillar 1.4.2
pkgbuild 1.0.3
pkgconfig 2.0.2
pkgload 1.0.2
plyr 1.8.4
praise 1.0.0
prettyunits 1.0.2
processx 3.4.0
ps 1.3.0
purrr 0.3.2
rcmdcheck 1.3.3
remotes 2.1.0
reshape2 1.4.3
rlang 0.4.0
roxygen2 6.1.1
rpart 4.1-15
rprojroot 1.3-2
rstudioapi 0.10
scales 1.0.0
sessioninfo 1.1.1
spatial 7.3-10
splines 3.4.4
stats4 3.4.4
stats 3.4.4
stringi 1.4.3
stringr 1.4.0
survival 2.44-1.1
sys 3.2
tcltk 3.4.4
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 2.1.1
tibble 2.1.3
tools 3.4.4
translations 3.4.4
usethis 1.5.1
utf8 1.1.4
utils 3.4.4
vctrs 0.2.0
viridisLite 0.3.0
whisker 0.3-2
withr 2.1.2
xml2 1.2.0
xopen 1.0.0
yaml 2.2.0
zeallot 0.1.0
BiocInstaller 1.28.0
DNAcopy 1.52.0

bash 4.3.11
python 2.7.6
python 3.4.3

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CrosscheckReadGroupFingerprints:CrosscheckReadGroupFingerprints *
RXTXcomm:RXTXcomm *
US_export_policy:US_export_policy *
Verify:Verify *
abbot:abbot 1.0.1
access-bridge:access-bridge *
alt-rt:alt-rt *
annotations:annotations *
aopalliance:aopalliance *
api:api *
appmanagement:appmanagement *
appmanagement_res:appmanagement_res *
avalon:avalon 4.1.2
backport-util-concurrent:backport-util-concurrent *
batik-svggen:batik-svggen *
beans:beans *
bluecove:bluecove 2.1.1-SNAPSHOT
browser-dl:browser-dl *
ca-certificates-java:ca-certificates-java *
charsets:charsets *
chilkat:chilkat *
cldrdata:cldrdata *
cloud-console-client:cloud-console-client *
coder:coder *
coder_java_res:coder_java_res *
com.beust:jcommander 1.27
com.fasterxml.jackson.core:jackson-core 2.1.3
com.google.apis:google-api-services-genomics v1beta2-rev9-1.19.0
com.google.cloud.genomics:gatk-tools-java 1.1
com.google.cloud.genomics:google-genomics-utils v1beta2-0.19
com.google.guava:guava 11.0.2
com.google.inject.assistedinject:guice-assistedinject 2.0
com.google.inject:guice 2.0
com.icl.saxon.StyleSheet:saxon *
com.jamesmurty.utils:java-xmlbuilder 0.4
com.jidesoft.utils.Lm:jide-common *
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com.mathworks.matlab.desktop:mde 1.0.0
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com.mathworks.mwswing:mwswing 1.0.0
com.mathworks.project.impl:impl 1.0.0
com.mathworks.toolbox.fixedpoint:fixedpoint 1.0.0
com.mathworks.util.final-bundle:util 1.0.0
com.mathworks.util.osgi.ServicesActivator:widgets 1.0.0
com.mathworks.webservices.clients:cloud-center-client 1.3
com.mathworks.webservices.clients:cloud-console-client 1.0
com.mckoi.runtime.McKoiDBMain:mckoidb *
com.sun.jini.example.browser.Browser:browser *
com.sun.jini.phoenix.Activation:phoenix *
com.sun.jini.start.DestroySharedGroup:destroy *
com.sun.jini.start.ServiceStarter:start *
com.sun:a64 1.0.0-pre-20071204-13:08:16
com.sun:activation 1.1
com.sun:jce 1.4
com.sun:jce 1.6
com.sun:jce 1.7.0_201
com.sun:jce 1.8.0_71
com.sun:jogl 1.1.1
com.sun:jsse 1.5
com.sun:jsse 1.6
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com.sun:sunec 1.8.0_60
com.sun:sunjce_provider 1.4
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com.sun:sunjce_provider 1.7.0_201
com.sun:sunjce_provider 1.8.0_71
com.sun:sunpkcs11 1.7.0_201
com.sun:sunpkcs11 1.8.0
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com.wutka.dtd.Tokenize:dtdparser121 *
common:common *
commons-cli:commons-cli 1.1
commons-codec:commons-codec 1.3
commons-collections:commons-collections 3.2
commons-collections:commons-collections 3.2.1
commons-io:commons-io 1.3.1
commons-io:commons-io 2.1
commons-io:commons-io 2.4
commons-lang:commons-lang 2.3
commons-lang:commons-lang 2.5
commons-logging:commons-logging 1.0.4
commons-logging:commons-logging 1.1.1
commons-math:commons-math 1.1
commons-net:commons-net 2.0
comparisons_res:comparisons_res *
compilefontconfig:compilefontconfig *
controllib:controllib *
costello:costello 1.0.1
dastudio:dastudio *
deploy:deploy *
desktop:desktop *
distcomp:distcomp *
distcomp_jar_res:distcomp_jar_res *
dnsns:dnsns *
dws_client:dws_client *
emma:emma 2.1.13730 (unsupported private build) (2012/05/30 15:21:47)
emma_ant:emma_ant 2.1.13730 (unsupported private build) (2012/05/30 15:21:47)
engine:engine *
fatalexit:fatalexit *
fiddler-dl:fiddler-dl *
fiddler:fiddler *
fixedpoint_java_res:fixedpoint_java_res *
foundation_libraries:foundation_libraries *
foxtrot:foxtrot-core 3.0
foxtrot:foxtrot-core 4.0
gettext:gettext *
glazedlists_java15:glazedlists_java15 1.7.1.alpha20070420
gluegen-rt:gluegen-rt *
gnu-regexp:gnu-regexp *
gnu-regexp:gnu-regexp 1.1.4
google-collect:google-collect *
gov.nist.math.jama:gov.nist.math.jama 1.1.1
group-dl:group-dl *
group:group *
guide:guide *
helpsearch:helpsearch *
helpui:helpui *
hg:hg *
hsqldb:hsqldb *
html:html *
ib6core:ib6core *
ib6extra:ib6extra *
ib6http:ib6http *
ib6https:ib6https *
ib6js:ib6js *
ib6swing:ib6swing *
ib6util:ib6util *
ib6xalan:ib6xalan *
icedtea-sound:icedtea-sound *
icessl:icessl *
ide:ide *
indicim:indicim *
install:install *
install_api_res:install_api_res *
install_core_res:install_core_res *
installwizard:installwizard *
instrument:instrument *
instrument_java_res:instrument_java_res *
instutil:instutil *
jaccess:jaccess *
jaccess:jaccess 1_4
jakarta-regexp:jakarta-regexp 1.2
java-atk-wrapper:java-atk-wrapper *
javabuilder:javabuilder *
javaws:javaws *
javax.mail:mail 1.4.4
javazic:javazic *
jfr:jfr 1.8.0_73
jfxrt:jfxrt *
jfxswt:jfxswt *
jgoodies-forms:jgoodies-forms 1.0.7 2006-05-03 10:48:21
jgoodies-forms:jgoodies-forms 1.3.0 2009-12-21 07:55:18
jgoodies-looks:jgoodies-looks 2.0.3 2006-06-10 10:33:14
jgraph:jgraph *
jhdf:jhdf *
jhdf4obj:jhdf4obj *
jhdf5:jhdf5 *
jhdf5obj:jhdf5obj *
jhdfobj:jhdfobj *
jhdfview:jhdfview *
jide-action:jide-action *
jide-charts:jide-charts *
jide-components:jide-components *
jide-dialogs:jide-dialogs *
jide-dock:jide-dock *
jide-grids:jide-grids *
jide-properties:jide-properties *
jide-shortcut:jide-shortcut *
jini-core:jini-core *
jini-ext:jini-ext *
jmi:jmi *
jogl:jogl *
jox116:jox116 *
jsch:jsch *
jsk-platform:jsk-platform *
jsk-policy:jsk-policy *
jsk-resources:jsk-resources *
jsse:jsse 1.7.0_201
jsse:jsse 1.8.0_73
junit:junit *
jxlayer:jxlayer *
libintl:libintl *
linuxppk:linuxppk *
lmlogin:lmlogin *
local_policy:local_policy *
localedata:localedata *
log4j:log4j 1.2.15
loginws_client:loginws_client *
mahalo-dl:mahalo-dl *
mahalo:mahalo *
management-agent:management-agent *
matlab:matlab *
matlab_desktop_res:matlab_desktop_res *
matlab_graphics_java_res:matlab_graphics_java_res *
matlab_graphics_java_widgets_res:matlab_graphics_java_widgets_res *
matlab_java_core_res:matlab_java_core_res *
matlab_java_project_impl_res:matlab_java_project_impl_res *
matlab_java_widgets_res:matlab_java_widgets_res *
mcrinstaller:mcrinstaller *
mcrinstaller_res:mcrinstaller_res *
mlservices:mlservices *
mlwebservices:mlwebservices *
mvm:mvm *
mw-license-server-client:mw-license-server-client *
mw-service-client-core:mw-service-client-core *
mw_java_foundation_res:mw_java_foundation_res *
mw_java_help_ui_res:mw_java_help_ui_res *
mw_java_html_res:mw_java_html_res *
mwaws_client:mwaws_client *
mwt:mwt *
nashorn:nashorn 1.8.0_73-b02
nekohtml:nekohtml 0.9.5
net.sf.bluecove:bluecove-bluez 2.1.1-SNAPSHOT
net.sf.bluecove:bluecove-emu 2.1.1-SNAPSHOT
net.sf.saxon.Transform:saxon9 *
net:net *
netbeans:netbeans *
norm-dl:norm-dl *
norm:norm *
openide:openide *
org.apache.ant:ant-launcher *
org.apache.ant:ant 1.6.5
org.apache.ant:ant 1.8.1
org.apache.axis2:axis2-adb 1.4
org.apache.axis2:axis2-adb 1.5.4
org.apache.axis2:axis2-kernel 1.4
org.apache.axis2:axis2-kernel 1.5.4
org.apache.axis2:axis2-transport-http 1.5.4
org.apache.axis2:axis2-transport-local 1.5.4
org.apache.commons.el:commons-el 1.0
org.apache.commons:commons-compress 1.0
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-math 2.2
org.apache.felix.main:main 1.8.0
org.apache.felix.org.apache.felix.main:main 1.0.4
org.apache.felix.scr:scr 1.0.2
org.apache.felix.scr:scr 1.0.8
org.apache.felix:org.apache.felix.framework 1.8.0
org.apache.felix:org.apache.felix.main 1.0.4
org.apache.felix:org.apache.felix.main 1.8.0
org.apache.felix:org.apache.felix.scr 1.0.2
org.apache.felix:org.apache.felix.scr 1.0.8
org.apache.geronimo.specs:geronimo-stax-api_1.0_spec 1.0.1
org.apache.httpcomponents:httpclient 4.1.1
org.apache.httpcomponents:httpcore 4.0
org.apache.httpcomponents:httpcore 4.1
org.apache.lucene:lucene-analyzers 2.0.0
org.apache.lucene:lucene-core 2.0.0
org.apache.neethi:neethi 2.0.4
org.apache.oro:jakarta-oro 2.0.8
org.apache.ws.commons.axiom:axiom-api 1.2.10
org.apache.ws.commons.axiom:axiom-api 1.2.7
org.apache.ws.commons.axiom:axiom-impl 1.2.10
org.apache.ws.commons.axiom:axiom-impl 1.2.7
org.apache.ws.commons.schema:XmlSchema 1.4.2
org.apache.ws.commons.schema:XmlSchema 1.4.3
org.apache.xerces.impl.Version:xercesImpl 1.3.03
org.apache.xerces.impl.Version:xercesImpl 2.9.0
org.apache.xmlcommons.Version:xml-apis 1.3.04
org.apache:commons-httpclient 3.1
org.broadinstitute.cga.tools.gatk.scattergather.Prepare:GatkScatterGatherPrepare *
org.broadinstitute.cga.tools.seq.MakeLanelist:MakeLaneList *
org.broadinstitute.cga.tools.seq.RegionCovPerLane:RegionCovPerLane *
org.broadinstitute.gatk.engine.CommandLineGATK:GenomeAnalysisTK *
org.broadinstitute.gatk:gatk-engine 3.5
org.broadinstitute.gatk:gatk-package-distribution 3.5
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org.broadinstitute.gatk:gatk-tools-public 3.5
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org.broadinstitute.sting.gatk.CommandLineGATK:GenomeAnalysisTK *
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testmeas:testmeas *
thaiim:thaiim *
timer:timer *
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jquery-ui 1.12.1

Cython 0.24
Cython 0.29.12
Django 1.10.0
Oncotator 1.9.9.0
PyGObject 3.12.0
PyVCF 0.6.8
PyYAML 3.11
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python-memcached 1.57
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traits 5.1.2
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urllib3 1.7.1
virtualenv 16.6.1
wheel 0.24.0
wheel 0.33.4
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