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broadinstitute/gatk-test : 4.0-prerelease-1efafd2b5

Latest release: almost 7 years ago - 23 downloads - 1,213 dependencies

JSON

Dependencies

ubuntu/adduser 3.113 nmu3ubuntu4
ubuntu/apt-utils 1.2.24
ubuntu/apt 1.2.24
ubuntu/aufs-tools 1:3.2 20130722-1.1ubuntu1
ubuntu/autoconf 2.69-9
ubuntu/automake 1:1.15-4ubuntu1
ubuntu/autotools-dev 20150820.1
ubuntu/base-files 9.4ubuntu4.5
ubuntu/base-passwd 3.5.39
ubuntu/bash 4.3-14ubuntu1.2
ubuntu/bedtools 2.25.0-1
ubuntu/binutils 2.26.1-1ubuntu1~16.04.5
ubuntu/bsdmainutils 9.0.6ubuntu3
ubuntu/bsdutils 1:2.27.1-6ubuntu3.3
ubuntu/btrfs-tools 4.4-1ubuntu1
ubuntu/build-essential 12.1ubuntu2
ubuntu/bzip2-doc 1.0.6-8
ubuntu/bzip2 1.0.6-8
ubuntu/ca-certificates-java 20160321
ubuntu/ca-certificates 20170717~16.04.1
ubuntu/cdbs 0.4.130ubuntu2
ubuntu/coreutils 8.25-2ubuntu3~16.04
ubuntu/cpp-5 5.4.0-6ubuntu1~16.04.5
ubuntu/cpp 4:5.3.1-1ubuntu1
ubuntu/cron 3.0pl1-128ubuntu2
ubuntu/curl 7.47.0-1ubuntu2.4
ubuntu/dash 0.5.8-2.1ubuntu2
ubuntu/dbus 1.10.6-1ubuntu3.3
ubuntu/debconf 1.5.58ubuntu1
ubuntu/debhelper 9.20160115ubuntu3
ubuntu/debianutils 4.7
ubuntu/default-jre-headless 2:1.8-56ubuntu2
ubuntu/default-jre 2:1.8-56ubuntu2
ubuntu/dh-python 2.20151103ubuntu1.1
ubuntu/dh-strip-nondeterminism 0.015-1
ubuntu/dh-translations 129
ubuntu/diffutils 1:3.3-3
ubuntu/distro-info-data 0.28ubuntu0.5
ubuntu/dpkg-dev 1.18.4ubuntu1.2
ubuntu/dpkg-sig 0.13.1 nmu2
ubuntu/dpkg 1.18.4ubuntu1.2
ubuntu/e2fslibs 1.42.13-1ubuntu1
ubuntu/e2fsprogs 1.42.13-1ubuntu1
ubuntu/fakeroot 1.20.2-1ubuntu1
ubuntu/file 1:5.25-2ubuntu1
ubuntu/findutils 4.6.0 git 20160126-2
ubuntu/libaec0 0.3.2-1
ubuntu/libalgorithm-diff-perl 1.19.03-1
ubuntu/libalgorithm-diff-xs-perl 0.04-4build1
ubuntu/libalgorithm-merge-perl 0.08-3
ubuntu/libapparmor1 2.10.95-0ubuntu2.7
ubuntu/libapt-inst2.0 1.2.24
ubuntu/libapt-pkg5.0 1.2.24
ubuntu/libarchive-zip-perl 1.56-2
ubuntu/libasan2 5.4.0-6ubuntu1~16.04.5
ubuntu/fontconfig-config 2.11.94-0ubuntu1.1
ubuntu/fontconfig 2.11.94-0ubuntu1.1
ubuntu/fonts-dejavu-core 2.35-1
ubuntu/fonts-dejavu-extra 2.35-1
ubuntu/g -5 5.4.0-6ubuntu1~16.04.5
ubuntu/g 4:5.3.1-1ubuntu1
ubuntu/gcc-5-base 5.4.0-6ubuntu1~16.04.5
ubuntu/gcc-5 5.4.0-6ubuntu1~16.04.5
ubuntu/gcc-6-base 6.0.1-0ubuntu1
ubuntu/gcc 4:5.3.1-1ubuntu1
ubuntu/gettext-base 0.19.7-2ubuntu3
ubuntu/gettext 0.19.7-2ubuntu3
ubuntu/gfortran-5 5.4.0-6ubuntu1~16.04.5
ubuntu/gfortran 4:5.3.1-1ubuntu1
ubuntu/gir1.2-glib-2.0 1.46.0-3ubuntu1
ubuntu/git-man 1:2.7.4-0ubuntu1.3
ubuntu/git 1:2.7.4-0ubuntu1.3
ubuntu/gnupg 1.4.20-1ubuntu3.1
ubuntu/gpgv 1.4.20-1ubuntu3.1
ubuntu/grep 2.25-1~16.04.1
ubuntu/groff-base 1.22.3-7
ubuntu/gzip 1.6-4ubuntu1
ubuntu/hdfview 2.9-5
ubuntu/hicolor-icon-theme 0.15-0ubuntu1
ubuntu/hostname 3.16ubuntu2
ubuntu/ifupdown 0.8.10ubuntu1.2
ubuntu/init-system-helpers 1.29ubuntu4
ubuntu/init 1.29ubuntu4
ubuntu/initscripts 2.88dsf-59.3ubuntu2
ubuntu/insserv 1.14.0-5ubuntu3
ubuntu/intltool-debian 0.35.0 20060710.4
ubuntu/intltool 0.51.0-2
ubuntu/iproute2 4.3.0-1ubuntu3.16.04.1
ubuntu/iptables 1.6.0-2ubuntu3
ubuntu/isc-dhcp-client 4.3.3-5ubuntu12.7
ubuntu/isc-dhcp-common 4.3.3-5ubuntu12.7
ubuntu/iso-codes 3.65-1
ubuntu/java-common 0.56ubuntu2
ubuntu/java-wrappers 0.1.28
ubuntu/krb5-locales 1.13.2 dfsg-5ubuntu2
ubuntu/less 481-2.1ubuntu0.2
ubuntu/libacl1 2.2.52-3
ubuntu/libasn1-8-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libasound2-data 1.1.0-0ubuntu1
ubuntu/libasound2 1.1.0-0ubuntu1
ubuntu/libasprintf-dev 0.19.7-2ubuntu3
ubuntu/libasprintf0v5 0.19.7-2ubuntu3
ubuntu/libasyncns0 0.8-5build1
ubuntu/libatk1.0-0 2.18.0-1
ubuntu/libatk1.0-data 2.18.0-1
ubuntu/libatm1 1:2.5.1-1.5
ubuntu/libatomic1 5.4.0-6ubuntu1~16.04.5
ubuntu/libattr1 1:2.4.47-2
ubuntu/libaudit-common 1:2.4.5-1ubuntu2
ubuntu/libaudit1 1:2.4.5-1ubuntu2
ubuntu/libauthen-sasl-perl 2.1600-1
ubuntu/libavahi-client3 0.6.32~rc dfsg-1ubuntu2
ubuntu/libavahi-common-data 0.6.32~rc dfsg-1ubuntu2
ubuntu/libavahi-common3 0.6.32~rc dfsg-1ubuntu2
ubuntu/libblas-common 3.6.0-2ubuntu2
ubuntu/libblas-dev 3.6.0-2ubuntu2
ubuntu/libblas3 3.6.0-2ubuntu2
ubuntu/libblkid1 2.27.1-6ubuntu3.3
ubuntu/libbsd0 0.8.2-1
ubuntu/libbz2-1.0 1.0.6-8
ubuntu/libbz2-dev 1.0.6-8
ubuntu/libc-bin 2.23-0ubuntu9
ubuntu/libc-dev-bin 2.23-0ubuntu9
ubuntu/libc6-dev 2.23-0ubuntu9
ubuntu/libc6 2.23-0ubuntu9
ubuntu/libcairo2 1.14.6-1
ubuntu/libcap-ng0 0.7.7-1
ubuntu/libcap2-bin 1:2.24-12
ubuntu/libcap2 1:2.24-12
ubuntu/libcc1-0 5.4.0-6ubuntu1~16.04.5
ubuntu/libcilkrts5 5.4.0-6ubuntu1~16.04.5
ubuntu/libcomerr2 1.42.13-1ubuntu1
ubuntu/libconfig-file-perl 1.50-3
ubuntu/libcroco3 0.6.11-1
ubuntu/libcryptsetup4 2:1.6.6-5ubuntu2.1
ubuntu/libcups2 2.1.3-4ubuntu0.3
ubuntu/libcurl3-gnutls 7.47.0-1ubuntu2.4
ubuntu/libcurl3 7.47.0-1ubuntu2.4
ubuntu/libdatrie1 0.2.10-2
ubuntu/libdb5.3 5.3.28-11
ubuntu/libdbus-1-3 1.10.6-1ubuntu3.3
ubuntu/libdbus-glib-1-2 0.106-1
ubuntu/libdebconfclient0 0.198ubuntu1
ubuntu/libdevmapper1.02.1 2:1.02.110-1ubuntu10
ubuntu/libdns-export162 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libdpkg-perl 1.18.4ubuntu1.2
ubuntu/libdrm-amdgpu1 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm-intel1 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm-nouveau2 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm-radeon1 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm2 2.4.76-1~ubuntu16.04.1
ubuntu/libedit2 3.1-20150325-1ubuntu2
ubuntu/libelf1 0.165-3ubuntu1
ubuntu/libencode-locale-perl 1.05-1
ubuntu/liberror-perl 0.17-1.2
ubuntu/libexpat1-dev 2.1.0-7ubuntu0.16.04.3
ubuntu/libexpat1 2.1.0-7ubuntu0.16.04.3
ubuntu/libfakeroot 1.20.2-1ubuntu1
ubuntu/libfdisk1 2.27.1-6ubuntu3.3
ubuntu/libffi6 3.2.1-4
ubuntu/libfile-basedir-perl 0.07-1
ubuntu/libfile-desktopentry-perl 0.22-1
ubuntu/libfile-fcntllock-perl 0.22-3
ubuntu/libfile-listing-perl 6.04-1
ubuntu/libfile-mimeinfo-perl 0.27-1
ubuntu/libfile-stripnondeterminism-perl 0.015-1
ubuntu/libflac8 1.3.1-4
ubuntu/libfont-afm-perl 1.20-1
ubuntu/libfontconfig1 2.11.94-0ubuntu1.1
ubuntu/libfontenc1 1:1.1.3-1
ubuntu/libfreetype6 2.6.1-0.1ubuntu2.3
ubuntu/libgcc-5-dev 5.4.0-6ubuntu1~16.04.5
ubuntu/libgcc1 1:6.0.1-0ubuntu1
ubuntu/libgcrypt20 1.6.5-2ubuntu0.3
ubuntu/libgdbm3 1.8.3-13.1
ubuntu/libgdk-pixbuf2.0-0 2.32.2-1ubuntu1.3
ubuntu/libgdk-pixbuf2.0-common 2.32.2-1ubuntu1.3
ubuntu/libgettextpo-dev 0.19.7-2ubuntu3
ubuntu/libgettextpo0 0.19.7-2ubuntu3
ubuntu/libgfortran-5-dev 5.4.0-6ubuntu1~16.04.5
ubuntu/libgfortran3 5.4.0-6ubuntu1~16.04.5
ubuntu/libgif7 5.1.4-0.3~16.04
ubuntu/libgirepository-1.0-1 1.46.0-3ubuntu1
ubuntu/libgl1-mesa-dri 17.0.7-0ubuntu0.16.04.2
ubuntu/libgl1-mesa-glx 17.0.7-0ubuntu0.16.04.2
ubuntu/libglapi-mesa 17.0.7-0ubuntu0.16.04.2
ubuntu/libglib2.0-0 2.48.2-0ubuntu1
ubuntu/libglib2.0-data 2.48.2-0ubuntu1
ubuntu/libgmp10 2:6.1.0 dfsg-2
ubuntu/libgnutls30 3.4.10-4ubuntu1.4
ubuntu/libgomp1 5.4.0-6ubuntu1~16.04.5
ubuntu/libgpg-error0 1.21-2ubuntu1
ubuntu/libgraphite2-3 1.3.10-0ubuntu0.16.04.1
ubuntu/libgssapi-krb5-2 1.13.2 dfsg-5ubuntu2
ubuntu/libgssapi3-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libgtk2.0-0 2.24.30-1ubuntu1.16.04.2
ubuntu/libgtk2.0-bin 2.24.30-1ubuntu1.16.04.2
ubuntu/libgtk2.0-common 2.24.30-1ubuntu1.16.04.2
ubuntu/libharfbuzz0b 1.0.1-1ubuntu0.1
ubuntu/libhcrypto4-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libhdf4-0 4.2.10-3.2
ubuntu/libhdf5-10 1.8.16 docs-4ubuntu1
ubuntu/libheimbase1-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libheimntlm0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libhogweed4 3.2-1ubuntu0.16.04.1
ubuntu/libhtml-form-perl 6.03-1
ubuntu/libhtml-format-perl 2.11-2
ubuntu/libhtml-parser-perl 3.72-1
ubuntu/libhtml-tagset-perl 3.20-2
ubuntu/libhtml-tree-perl 5.03-2
ubuntu/libhttp-cookies-perl 6.01-1
ubuntu/libhttp-daemon-perl 6.01-1
ubuntu/libhttp-date-perl 6.02-1
ubuntu/libhttp-message-perl 6.11-1
ubuntu/libhttp-negotiate-perl 6.00-2
ubuntu/libhx509-5-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libice-dev 2:1.0.9-1
ubuntu/libice6 2:1.0.9-1
ubuntu/libicu55 55.1-7ubuntu0.3
ubuntu/libidn11 1.32-3ubuntu1.2
ubuntu/libio-html-perl 1.001-1
ubuntu/libio-socket-ssl-perl 2.024-1
ubuntu/libipc-system-simple-perl 1.25-3
ubuntu/libisc-export160 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libisl15 0.16.1-1
ubuntu/libitm1 5.4.0-6ubuntu1~16.04.5
ubuntu/libjbig0 2.1-3.1
ubuntu/libjgraph-java 5.12.4.2 dfsg-2
ubuntu/libjhdf4-java 2.9-5
ubuntu/libjhdf4-jni 2.9-5
ubuntu/libjhdf5-java 2.9-5
ubuntu/libjhdf5-jni 2.9-5
ubuntu/libjpeg-dev 8c-2ubuntu8
ubuntu/libjpeg-turbo8-dev 1.4.2-0ubuntu3
ubuntu/libjpeg-turbo8 1.4.2-0ubuntu3
ubuntu/libjpeg8-dev 8c-2ubuntu8
ubuntu/libjpeg8 8c-2ubuntu8
ubuntu/libjson-c2 0.11-4ubuntu2
ubuntu/libk5crypto3 1.13.2 dfsg-5ubuntu2
ubuntu/libkeyutils1 1.5.9-8ubuntu1
ubuntu/libkmod2 22-1ubuntu5
ubuntu/libkrb5-26-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libkrb5-3 1.13.2 dfsg-5ubuntu2
ubuntu/libkrb5support0 1.13.2 dfsg-5ubuntu2
ubuntu/liblapack-dev 3.6.0-2ubuntu2
ubuntu/liblapack3 3.6.0-2ubuntu2
ubuntu/liblcms2-2 2.6-3ubuntu2
ubuntu/libldap-2.4-2 2.4.42 dfsg-2ubuntu3.2
ubuntu/libllvm4.0 1:4.0-1ubuntu1~16.04.2
ubuntu/liblsan0 5.4.0-6ubuntu1~16.04.5
ubuntu/liblwp-mediatypes-perl 6.02-1
ubuntu/liblwp-protocol-https-perl 6.06-2
ubuntu/liblz4-1 0.0~r131-2ubuntu2
ubuntu/liblzma-dev 5.1.1alpha 20120614-2ubuntu2
ubuntu/liblzma5 5.1.1alpha 20120614-2ubuntu2
ubuntu/liblzo2-2 2.08-1.2
ubuntu/libmagic1 1:5.25-2ubuntu1
ubuntu/libmail-sendmail-perl 0.79.16-1
ubuntu/libmailtools-perl 2.13-1
ubuntu/libmnl0 1.0.3-5
ubuntu/libmount1 2.27.1-6ubuntu3.3
ubuntu/libmpc3 1.0.3-1
ubuntu/libmpdec2 2.4.2-1
ubuntu/libmpfr4 3.1.4-1
ubuntu/libmpx0 5.4.0-6ubuntu1~16.04.5
ubuntu/libncurses5-dev 6.0 20160213-1ubuntu1
ubuntu/libncurses5 6.0 20160213-1ubuntu1
ubuntu/libncursesw5 6.0 20160213-1ubuntu1
ubuntu/libnet-dbus-perl 1.1.0-3build1
ubuntu/libnet-http-perl 6.09-1
ubuntu/libnet-smtp-ssl-perl 1.03-1
ubuntu/libnet-ssleay-perl 1.72-1build1
ubuntu/libnettle6 3.2-1ubuntu0.16.04.1
ubuntu/libnfnetlink0 1.0.1-3
ubuntu/libnspr4 2:4.13.1-0ubuntu0.16.04.1
ubuntu/libnss3-nssdb 2:3.28.4-0ubuntu0.16.04.3
ubuntu/libnss3 2:3.28.4-0ubuntu0.16.04.3
ubuntu/libogg0 1.3.2-1
ubuntu/libp11-kit0 0.23.2-5~ubuntu16.04.1
ubuntu/libpam-modules-bin 1.1.8-3.2ubuntu2
ubuntu/libpam-modules 1.1.8-3.2ubuntu2
ubuntu/libpam-runtime 1.1.8-3.2ubuntu2
ubuntu/libpam0g 1.1.8-3.2ubuntu2
ubuntu/libpango-1.0-0 1.38.1-1
ubuntu/libpangocairo-1.0-0 1.38.1-1
ubuntu/libpangoft2-1.0-0 1.38.1-1
ubuntu/libpaper-utils 1.1.24 nmu4ubuntu1
ubuntu/libpaper1 1.1.24 nmu4ubuntu1
ubuntu/libpciaccess0 0.13.4-1
ubuntu/libpcre16-3 2:8.38-3.1
ubuntu/libpcre3-dev 2:8.38-3.1
ubuntu/libpcre32-3 2:8.38-3.1
ubuntu/libpcre3 2:8.38-3.1
ubuntu/libpcrecpp0v5 2:8.38-3.1
ubuntu/libpcsclite1 1.8.14-1ubuntu1.16.04.1
ubuntu/libperl5.22 5.22.1-9
ubuntu/libpipeline1 1.4.1-2
ubuntu/libpixman-1-0 0.33.6-1
ubuntu/libpng12-0 1.2.54-1ubuntu1
ubuntu/libpng12-dev 1.2.54-1ubuntu1
ubuntu/libpopt0 1.16-10
ubuntu/libprocps4 2:3.3.10-4ubuntu2.3
ubuntu/libpthread-stubs0-dev 0.3-4
ubuntu/libpulse0 1:8.0-0ubuntu3.4
ubuntu/libpython-dev 2.7.11-1
ubuntu/libpython-stdlib 2.7.11-1
ubuntu/libpython2.7-dev 2.7.12-1ubuntu0~16.04.1
ubuntu/libpython2.7-minimal 2.7.12-1ubuntu0~16.04.1
ubuntu/libpython2.7-stdlib 2.7.12-1ubuntu0~16.04.1
ubuntu/libpython2.7 2.7.12-1ubuntu0~16.04.1
ubuntu/libpython3-dev 3.5.1-3
ubuntu/libpython3-stdlib 3.5.1-3
ubuntu/libpython3.5-dev 3.5.2-2ubuntu0~16.04.3
ubuntu/libpython3.5-minimal 3.5.2-2ubuntu0~16.04.3
ubuntu/libpython3.5-stdlib 3.5.2-2ubuntu0~16.04.3
ubuntu/libpython3.5 3.5.2-2ubuntu0~16.04.3
ubuntu/libquadmath0 5.4.0-6ubuntu1~16.04.5
ubuntu/libreadline-dev 6.3-8ubuntu2
ubuntu/libreadline6-dev 6.3-8ubuntu2
ubuntu/libreadline6 6.3-8ubuntu2
ubuntu/libroken18-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/librtmp1 2.4 20151223.gitfa8646d-1ubuntu0.1
ubuntu/libsasl2-2 2.1.26.dfsg1-14build1
ubuntu/libsasl2-modules-db 2.1.26.dfsg1-14build1
ubuntu/libsasl2-modules 2.1.26.dfsg1-14build1
ubuntu/libseccomp2 2.2.3-3ubuntu3
ubuntu/libselinux1 2.4-3build2
ubuntu/libsemanage-common 2.3-1build3
ubuntu/libsemanage1 2.3-1build3
ubuntu/libsensors4 1:3.4.0-2
ubuntu/libsepol1 2.4-2
ubuntu/libsigsegv2 2.10-4
ubuntu/libsm-dev 2:1.2.2-1
ubuntu/libsm6 2:1.2.2-1
ubuntu/libsmartcols1 2.27.1-6ubuntu3.3
ubuntu/libsndfile1 1.0.25-10ubuntu0.16.04.1
ubuntu/libsqlite3-0 3.11.0-1ubuntu1
ubuntu/libss2 1.42.13-1ubuntu1
ubuntu/libssl1.0.0 1.0.2g-1ubuntu4.8
ubuntu/libstdc -5-dev 5.4.0-6ubuntu1~16.04.5
ubuntu/libstdc 6 5.4.0-6ubuntu1~16.04.5
ubuntu/libsys-hostname-long-perl 1.5-1
ubuntu/libsystemd0 229-4ubuntu21
ubuntu/libsz2 0.3.2-1
ubuntu/libtasn1-6 4.7-3ubuntu0.16.04.2
ubuntu/libtcl8.6 8.6.5 dfsg-2
ubuntu/libtext-iconv-perl 1.7-5build4
ubuntu/libthai-data 0.1.24-2
ubuntu/libthai0 0.1.24-2
ubuntu/libtie-ixhash-perl 1.23-2
ubuntu/libtiff5 4.0.6-1ubuntu0.2
ubuntu/libtimedate-perl 2.3000-2
ubuntu/libtinfo-dev 6.0 20160213-1ubuntu1
ubuntu/libtinfo5 6.0 20160213-1ubuntu1
ubuntu/libtk8.6 8.6.5-1
ubuntu/libtsan0 5.4.0-6ubuntu1~16.04.5
ubuntu/libtxc-dxtn-s2tc0 0~git20131104-1.1
ubuntu/libubsan0 5.4.0-6ubuntu1~16.04.5
ubuntu/libudev1 229-4ubuntu21
ubuntu/libunistring0 0.9.3-5.2ubuntu1
ubuntu/liburi-perl 1.71-1
ubuntu/libusb-0.1-4 2:0.1.12-28
ubuntu/libustr-1.0-1 1.0.4-5
ubuntu/libuuid1 2.27.1-6ubuntu3.3
ubuntu/libvorbis0a 1.3.5-3
ubuntu/libvorbisenc2 1.3.5-3
ubuntu/libwind0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libwrap0 7.6.q-25
ubuntu/libwww-perl 6.15-1
ubuntu/libwww-robotrules-perl 6.01-1
ubuntu/libx11-6 2:1.6.3-1ubuntu2
ubuntu/libx11-data 2:1.6.3-1ubuntu2
ubuntu/libx11-dev 2:1.6.3-1ubuntu2
ubuntu/libx11-doc 2:1.6.3-1ubuntu2
ubuntu/libx11-protocol-perl 0.56-7
ubuntu/libx11-xcb1 2:1.6.3-1ubuntu2
ubuntu/libxau-dev 1:1.0.8-1
ubuntu/libxau6 1:1.0.8-1
ubuntu/libxaw7 2:1.0.13-1
ubuntu/libxcb-dri2-0 1.11.1-1ubuntu1
ubuntu/libxcb-dri3-0 1.11.1-1ubuntu1
ubuntu/libxcb-glx0 1.11.1-1ubuntu1
ubuntu/libxcb-present0 1.11.1-1ubuntu1
ubuntu/libxcb-render0 1.11.1-1ubuntu1
ubuntu/libxcb-shape0 1.11.1-1ubuntu1
ubuntu/libxcb-shm0 1.11.1-1ubuntu1
ubuntu/netbase 5.3
ubuntu/libxcb-sync1 1.11.1-1ubuntu1
ubuntu/libxcb1-dev 1.11.1-1ubuntu1
ubuntu/libxcb1 1.11.1-1ubuntu1
ubuntu/libxcomposite1 1:0.4.4-1
ubuntu/libxcursor1 1:1.1.14-1
ubuntu/libxdamage1 1:1.1.4-2
ubuntu/libxdmcp-dev 1:1.1.2-1.1
ubuntu/libxdmcp6 1:1.1.2-1.1
ubuntu/libxext6 2:1.3.3-1
ubuntu/libxfixes3 1:5.0.1-2
ubuntu/libxft2 2.3.2-1
ubuntu/libxi6 2:1.7.6-1
ubuntu/libxinerama1 2:1.1.3-1
ubuntu/libxml-parser-perl 2.44-1build1
ubuntu/libxml-twig-perl 1:3.48-1
ubuntu/libxml-xpathengine-perl 0.13-1
ubuntu/libxml2 2.9.3 dfsg1-1ubuntu0.3
ubuntu/libxmu6 2:1.1.2-2
ubuntu/libxmuu1 2:1.1.2-2
ubuntu/libxpm4 1:3.5.11-1ubuntu0.16.04.1
ubuntu/libxrandr2 2:1.5.0-1
ubuntu/libxrender1 1:0.9.9-0ubuntu1
ubuntu/libxshmfence1 1.2-1
ubuntu/libxss1 1:1.2.2-1
ubuntu/libxt-dev 1:1.1.5-0ubuntu1
ubuntu/libxt6 1:1.1.5-0ubuntu1
ubuntu/libxtables11 1.6.0-2ubuntu3
ubuntu/libxtst6 2:1.2.2-1
ubuntu/libxv1 2:1.0.10-1
ubuntu/libxxf86dga1 2:1.1.4-1
ubuntu/libxxf86vm1 1:1.1.4-1
ubuntu/linux-libc-dev 4.4.0-98.121
ubuntu/login 1:4.2-3.1ubuntu5.3
ubuntu/lsb-base 9.20160110ubuntu0.2
ubuntu/lsb-release 9.20160110ubuntu0.2
ubuntu/lynx-common 2.8.9dev8-4ubuntu1
ubuntu/lynx 2.8.9dev8-4ubuntu1
ubuntu/m4 1.4.17-5
ubuntu/make 4.1-6
ubuntu/makedev 2.3.1-93ubuntu2~ubuntu16.04.1
ubuntu/man-db 2.7.5-1
ubuntu/manpages-dev 4.04-2
ubuntu/manpages 4.04-2
ubuntu/mawk 1.3.3-17ubuntu2
ubuntu/mime-support 3.59ubuntu1
ubuntu/mount 2.27.1-6ubuntu3.3
ubuntu/multiarch-support 2.23-0ubuntu9
ubuntu/ncurses-base 6.0 20160213-1ubuntu1
ubuntu/ncurses-bin 6.0 20160213-1ubuntu1
ubuntu/openjdk-8-jdk-headless 8u131-b11-2ubuntu1.16.04.3
ubuntu/openjdk-8-jdk 8u131-b11-2ubuntu1.16.04.3
ubuntu/openjdk-8-jre-headless 8u131-b11-2ubuntu1.16.04.3
ubuntu/openjdk-8-jre 8u131-b11-2ubuntu1.16.04.3
ubuntu/openssh-client 1:7.2p2-4ubuntu2.2
ubuntu/openssl 1.0.2g-1ubuntu4.8
ubuntu/passwd 1:4.2-3.1ubuntu5.3
ubuntu/patch 2.7.5-1
ubuntu/perl-base 5.22.1-9
ubuntu/perl-modules-5.22 5.22.1-9
ubuntu/perl 5.22.1-9
ubuntu/po-debconf 1.0.19
ubuntu/procps 2:3.3.10-4ubuntu2.3
ubuntu/python-apt-common 1.1.0~beta1build1
ubuntu/python-dev 2.7.11-1
ubuntu/python-minimal 2.7.11-1
ubuntu/python-pip-whl 8.1.1-2ubuntu0.4
ubuntu/python-pkg-resources 20.7.0-1
ubuntu/python-scour 0.32-1
ubuntu/python-setuptools 20.7.0-1
ubuntu/python-six 1.10.0-3
ubuntu/python2.7-dev 2.7.12-1ubuntu0~16.04.1
ubuntu/python2.7-minimal 2.7.12-1ubuntu0~16.04.1
ubuntu/python2.7 2.7.12-1ubuntu0~16.04.1
ubuntu/python3-apt 1.1.0~beta1build1
ubuntu/python3-dbus 1.2.0-3
ubuntu/python3-dev 3.5.1-3
ubuntu/python3-gi 3.20.0-0ubuntu1
ubuntu/python3-minimal 3.5.1-3
ubuntu/python3-pip 8.1.1-2ubuntu0.4
ubuntu/python3-pkg-resources 20.7.0-1
ubuntu/python3-pycurl 7.43.0-1ubuntu1
ubuntu/python3-setuptools 20.7.0-1
ubuntu/python3-software-properties 0.96.20.7
ubuntu/python3-wheel 0.29.0-1
ubuntu/python3.5-dev 3.5.2-2ubuntu0~16.04.3
ubuntu/python3.5-minimal 3.5.2-2ubuntu0~16.04.3
ubuntu/python3.5 3.5.2-2ubuntu0~16.04.3
ubuntu/python3 3.5.1-3
ubuntu/python 2.7.11-1
ubuntu/r-base-core 3.2.5-1xenial
ubuntu/r-base-dev 3.2.5-1xenial
ubuntu/r-doc-html 3.4.2-2xenial2
ubuntu/readline-common 6.3-8ubuntu2
ubuntu/rename 0.20-4
ubuntu/rsync 3.1.1-3ubuntu1
ubuntu/samtools 0.1.19-1ubuntu1
ubuntu/sed 4.2.2-7
ubuntu/sensible-utils 0.0.9
ubuntu/sgml-base 1.26 nmu4ubuntu1
ubuntu/shared-mime-info 1.5-2ubuntu0.1
ubuntu/software-properties-common 0.96.20.7
ubuntu/systemd-sysv 229-4ubuntu21
ubuntu/systemd 229-4ubuntu21
ubuntu/sysv-rc 2.88dsf-59.3ubuntu2
ubuntu/sysvinit-utils 2.88dsf-59.3ubuntu2
ubuntu/tar 1.28-2.1ubuntu0.1
ubuntu/tcpd 7.6.q-25
ubuntu/tzdata 2016j-0ubuntu0.16.04
ubuntu/ubuntu-keyring 2012.05.19
ubuntu/ucf 3.0036
ubuntu/unattended-upgrades 0.90ubuntu0.8
ubuntu/unzip 6.0-20ubuntu1
ubuntu/util-linux 2.27.1-6ubuntu3.3
ubuntu/wget 1.17.1-1ubuntu1.3
ubuntu/x11-common 1:7.7 13ubuntu3
ubuntu/x11-utils 7.7 3
ubuntu/x11-xserver-utils 7.7 7
ubuntu/x11proto-core-dev 7.0.31-1~ubuntu16.04.2
ubuntu/x11proto-input-dev 2.3.1-1
ubuntu/x11proto-kb-dev 1.0.7-0ubuntu1
ubuntu/xauth 1:1.0.9-1ubuntu2
ubuntu/xdg-user-dirs 0.15-2ubuntu6
ubuntu/xdg-utils 1.1.1-1ubuntu1.16.04.1
ubuntu/xml-core 0.13 nmu2
ubuntu/xorg-sgml-doctools 1:1.11-1
ubuntu/xtrans-dev 1.3.5-1
ubuntu/xz-utils 5.1.1alpha 20120614-2ubuntu2
ubuntu/zip 3.0-11
ubuntu/zlib1g-dev 1:1.2.8.dfsg-2ubuntu4.1
ubuntu/zlib1g 1:1.2.8.dfsg-2ubuntu4.1

com.twitter:chill-java 0.8.0
JLargeArrays:JLargeArrays 1.5
US_export_policy:US_export_policy *
annotations:annotations 2.0.1
aopalliance:aopalliance 1.0
api-common:api-common 1.1.0
args4j:args4j 2.33
arpack_combined_all:arpack_combined_all 0.1
asm:asm 3.1
barclay:barclay 2.0.0
biz.aQute.bndlib:biz.aQute.bndlib 3.2.0
bsh:bsh 2.0b4
cglib:cglib 2.2.1-v20090111
charsets:charsets *
cldrdata:cldrdata *
com.amazonaws:aws-java-sdk-core 1.11.6
com.amazonaws:aws-java-sdk-kms 1.11.6
com.twitter:chill_2.11 0.8.0
com.amazonaws:aws-java-sdk-s3 1.11.6
com.beust:jcommander 1.12
com.clearspring.analytics:stream 2.7.0
com.esotericsoftware.kryo:kryo 2.20
com.esotericsoftware.minlog:minlog 1.2
com.esotericsoftware.reflectasm:reflectasm 1.07
com.esotericsoftware:kryo-shaded 3.0.3
com.esotericsoftware:kryo 3.0.3
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.10.0
com.esotericsoftware:reflectasm 1.10.1
com.fasterxml.jackson.core:jackson-annotations 2.4.0
com.fasterxml.jackson.core:jackson-annotations 2.6.5
com.fasterxml.jackson.core:jackson-annotations 2.6.6
com.fasterxml.jackson.core:jackson-core 2.1.3
com.fasterxml.jackson.core:jackson-core 2.4.0
com.fasterxml.jackson.core:jackson-core 2.6.5
com.fasterxml.jackson.core:jackson-core 2.6.6
com.fasterxml.jackson.core:jackson-databind 2.4.0
com.fasterxml.jackson.core:jackson-databind 2.6.5
com.fasterxml.jackson.core:jackson-databind 2.6.6
com.fasterxml.jackson.module.jackson.module.scala:jackson-module-scala_2.11 2.6.5
com.fasterxml.jackson.module:jackson-module-paranamer 2.6.5
com.github.fommil.netlib:core 1.1
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil:jniloader 1.1
com.github.jsr203hadoop:jsr203hadoop 1.0.3
com.github.rwl:jtransforms 2.4.0
com.github.wendykierp:JTransforms 3.1
com.google.api-client:google-api-client-jackson2 1.20.0
com.google.api-client:google-api-client-java6 1.22.0
com.google.api-client:google-api-client 1.22.0
com.google.apis:google-api-services-genomics v1-rev527-1.22.0
com.google.apis:google-api-services-storage v1-rev108-1.22.0
com.google.auth:google-auth-library-credentials 0.7.0
com.google.auth:google-auth-library-credentials 0.7.1
com.google.auth:google-auth-library-oauth2-http 0.7.0
com.google.auth:google-auth-library-oauth2-http 0.7.1
com.google.auto.service:auto-service 1.0-rc2
com.google.auto.value:auto-value 1.2
com.google.auto:auto-common 1.0-SNAPSHOT
com.google.cloud.bigdataoss:gcs-connector 1.6.1-hadoop2
com.google.cloud.bigdataoss:gcsio 1.6.1
com.google.cloud.bigdataoss:util-hadoop 1.6.1-hadoop2
com.google.cloud.bigdataoss:util 1.6.1
gradle-maven:gradle-maven 3.1
com.google.cloud.genomics:gatk-tools-java 1.1
com.google.cloud.genomics:google-genomics-utils v1-0.10
com.google.cloud:google-cloud-core-http 1.2.3
com.google.cloud:google-cloud-core-http 1.2.4-SNAPSHOT
com.google.cloud:google-cloud-core 1.2.3
com.google.cloud:google-cloud-core 1.2.4-SNAPSHOT
com.google.cloud:google-cloud-nio 0.20.4-alpha-SNAPSHOT
com.google.cloud:google-cloud-storage 1.2.3
com.google.cloud:google-cloud-storage 1.2.4-SNAPSHOT
com.google.code.gson:gson 2.7
com.google.errorprone:error_prone_annotations 2.0.19
com.google.guava:guava-jdk5 17.0
com.google.guava:guava 11.0.2
com.google.guava:guava 14.0.1
com.google.guava:guava 18.0
com.google.guava:guava 19.0
com.google.guava:guava 20.0
com.google.http-client:google-http-client-appengine 1.21.0
com.google.http-client:google-http-client-jackson2 1.22.0
com.google.http-client:google-http-client-jackson 1.21.0
com.google.http-client:google-http-client 1.22.0
com.google.inject.servlet:guice-servlet 3.0
com.google.inject:guice 3.0
com.google.jimfs:jimfs 1.1
com.google.oauth-client:google-oauth-client-java6 1.22.0
com.google.oauth-client:google-oauth-client-jetty 1.22.0
com.google.oauth-client:google-oauth-client 1.22.0
com.google.protobuf:protobuf-java-util 3.3.0
com.google.protobuf:protobuf-java-util 3.3.1
com.google.protobuf:protobuf-java 2.5.0
com.google.protobuf:protobuf-java 3.0.0-beta-1
com.google.protobuf:protobuf-java 3.3.0
com.googlecode.jatl:jatl 0.2.2
com.googlecode.javaewah:JavaEWAH 0.7.9
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.protobuf-java-format:protobuf-java-format 1.2
com.intel:genomicsdb 0.8.1-proto-3.0.0-beta-1 uuid-static
com.jamesmurty.utils:java-xmlbuilder 0.4
com.jcraft:jsch 0.1.53
com.netflix.servo#servo-core:servo-core 0.12.12
com.ning:compress-lzf 1.0.3
com.opencsv:opencsv 3.4
com.sun.jersey.contribs:jersey-guice 1.9
com.sun.jersey:jersey-client 1.9
com.sun.jersey:jersey-core 1.9
com.sun.jersey:jersey-json 1.9
com.sun.jersey:jersey-server 1.9
com.sun.xml.bind:jaxb-impl 2.2.3-1
com.sun:activation 1.1
com.sun:jce 1.8.0_131
com.sun:sunec 1.8.0_131
com.sun:sunjce_provider 1.8.0_131
com.sun:sunpkcs11 1.8.0_131
com.thoughtworks.paranamer:paranamer 2.7
com.thoughtworks.qdox:qdox 1.12
com.thoughtworks.xstream:xstream 1.4.7
net.java:javax.servlet-api 3.1.0
net.java:javax.ws.rs-api 2.0.1
gradle-language-scala:gradle-language-scala 3.1
com.univocity:univocity-parsers 2.1.1
commons-cli:commons-cli 1.2
commons-codec:commons-codec 1.10
commons-codec:commons-codec 1.6
commons-codec:commons-codec 1.9
commons-collections:commons-collections 3.2.2
commons-configuration:commons-configuration 1.6
commons-daemon:commons-daemon 1.0.13
commons-digester:commons-digester 1.8
commons-io:commons-io 2.1
commons-io:commons-io 2.2
commons-io:commons-io 2.4
commons-io:commons-io 2.5
commons-lang:commons-lang 2.5
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.1.3
commons-logging:commons-logging 1.2
commons-net:commons-net 3.1
dnsns:dnsns *
dt:dt *
fastutil:fastutil 7.0.6
gatk-bwamem-jni:gatk-bwamem-jni 1.0.4
gatk-fermilite-jni:gatk-fermilite-jni 1.1.0
gatk-native-bindings:gatk-native-bindings 1.0.0
gax:gax 1.4.2
gettext:gettext *
gkl:gkl 0.8.2
google-api-services-genomics-v1-rev527:google-api-services-genomics-v1-rev527 1.22.0
google-api-services-storage-v1-rev108:google-api-services-storage-v1-rev108 1.22.0
google-genomics-utils-v1:google-genomics-utils-v1 0.10
gov.nist.math.jama:gov.nist.math.jama 1.1.1
gradle-announce:gradle-announce 3.1
gradle-antlr:gradle-antlr 3.1
gradle-base-services-groovy:gradle-base-services-groovy 3.1
gradle-base-services:gradle-base-services 3.1
gradle-cli:gradle-cli 3.1
gradle-code-quality:gradle-code-quality 3.1
gradle-composite:gradle-composite builds-3.1
gradle-core:gradle-core 3.1
gradle-dependency-management:gradle-dependency-management 3.1
gradle-diagnostics:gradle-diagnostics 3.1
gradle-docs:gradle-docs 3.1
gradle-download-task:gradle-download-task 2.1.0
gradle-ear:gradle-ear 3.1
gradle-git-version:gradle-git-version 0.5.1
gradle-ide-native:gradle-ide-native 3.1
gradle-ide-play:gradle-ide-play 3.1
gradle-ide:gradle-ide 3.1
gradle-installation-beacon:gradle-installation-beacon 3.1
gradle-ivy:gradle-ivy 3.1
gradle-jacoco:gradle-jacoco 3.1
gradle-javascript:gradle-javascript 3.1
gradle-jetty:gradle-jetty 3.1
gradle-jvm-services:gradle-jvm-services 3.1
gradle-language-groovy:gradle-language-groovy 3.1
gradle-language-java:gradle-language-java 3.1
gradle-language-jvm:gradle-language-jvm 3.1
gradle-language-native:gradle-language-native 3.1
gradle-logging:gradle-logging 3.1
gradle-messaging:gradle-messaging 3.1
gradle-model-core:gradle-model-core 3.1
gradle-model-groovy:gradle-model-groovy 3.1
gradle-native:gradle-native 3.1
gradle-open-api:gradle-open-api 3.1
gradle-osgi:gradle-osgi 3.1
gradle-platform-base:gradle-platform-base 3.1
gradle-platform-jvm:gradle-platform-jvm 3.1
gradle-platform-native:gradle-platform-native 3.1
gradle-platform-play:gradle-platform-play 3.1
gradle-plugin-development:gradle-plugin-development 3.1
gradle-plugin-use:gradle-plugin-use 3.1
gradle-plugins:gradle-plugins 3.1
gradle-process-services:gradle-process-services 3.1
gradle-publish:gradle-publish 3.1
gradle-reporting:gradle-reporting 3.1
gradle-resources-http:gradle-resources-http 3.1
gradle-resources-s3:gradle-resources-s3 3.1
gradle-resources-sftp:gradle-resources-sftp 3.1
gradle-resources:gradle-resources 3.1
gradle-scala:gradle-scala 3.1
gradle-script-kotlin:gradle-script-kotlin 0.3.2
gradle-signing:gradle-signing 3.1
gradle-task-cache-http:gradle-task-cache-http 3.1
gradle-test-kit:gradle-test-kit 3.1
gradle-testing-base:gradle-testing-base 3.1
gradle-testing-jvm:gradle-testing-jvm 3.1
gradle-testing-native:gradle-testing-native 3.1
gradle-tooling-api:gradle-tooling-api 3.1
gradle-tooling-api:gradle-tooling-api builders-3.1
gradle-ui:gradle-ui 3.1
gradle-versions-plugin:gradle-versions-plugin 0.12.0
gradle-wrapper:gradle-wrapper 3.1
gradle:gradle build-comparison-3.1
gradle:gradle build-init-3.1
groovy-all:groovy-all 2.4.7
groovy-backports-compat23:groovy-backports-compat23 2.4.4
grpc-auth:grpc-auth 1.6.1
grpc-context:grpc-context 1.6.1
grpc-core:grpc-core 1.6.1
grpc-google-genomics-v1:grpc-google-genomics-v1 0.1.0
grpc-netty:grpc-netty 1.6.1
grpc-protobuf-lite:grpc-protobuf-lite 1.6.1
grpc-protobuf:grpc-protobuf 1.6.1
grpc-stub:grpc-stub 1.6.1
hamcrest-all:hamcrest-all 1.3
hamcrest-core:hamcrest-core 1.3
hdf5-java-bindings:hdf5-java-bindings 1.1.0-hdf5_2.11.0
htsjdk:htsjdk 2.13.2
icedtea-sound:icedtea-sound *
instrumentation-api:instrumentation-api 0.4.3
io.dropwizard.metrics:metrics-core 3.1.2
io.dropwizard.metrics:metrics-graphite 3.1.2
io.dropwizard.metrics:metrics-json 3.1.2
io.dropwizard.metrics:metrics-jvm 3.1.2
io.netty:netty-all 4.0.29.Final
io.netty:netty-buffer 4.1.14.Final
net.razorvine:pyrolite 4.13
io.netty:netty-codec-http2 4.1.14.Final
io.netty:netty-codec-http 4.1.14.Final
io.netty:netty-codec-socks 4.1.14.Final
io.netty:netty-codec 4.1.14.Final
io.netty:netty-common 4.1.14.Final
io.netty:netty-handler-proxy 4.1.14.Final
io.netty:netty-handler 4.1.14.Final
io.netty:netty-resolver 4.1.14.Final
io.netty:netty-transport 4.1.14.Final
io.netty:netty 3.8.0.Final
jaccess:jaccess *
jackson-core-asl:jackson-core-asl 1.9.13
jackson-jaxrs:jackson-jaxrs 1.9.13
jackson-mapper-asl:jackson-mapper-asl 1.9.13
jackson-xc:jackson-xc 1.9.13
jarhdf5:jarhdf5 2.11.0
java-getopt:java-getopt 1.0.13
javax.ws.rs-api:javax.ws.rs-api 2.0.1
jaxb-api:jaxb-api 2.2.2
jcifs:jcifs 1.3.17
jcip-annotations:jcip-annotations 1.0
jcommander:jcommander 1.64
jconsole:jconsole *
jdtCompilerAdapter:jdtCompilerAdapter *
jets3t:jets3t 0.9.0
jgraph:jgraph *
jhdf:jhdf *
jhdf4obj:jhdf4obj *
jhdf5:jhdf5 *
jhdf5obj:jhdf5obj *
jhdfobj:jhdfobj *
jhdfview:jhdfview *
jline:jline 0.9.94
joda-time:joda-time 2.9.2
jsch:jsch 0.1.42
jsr305:jsr305 3.0.0
jsse:jsse 1.8.0_131
junit:junit 4.10
junit:junit 4.12
kotlin-reflect:kotlin-reflect 1.1.0-dev-2053
kryo-serializers:kryo-serializers 0.41
libintl:libintl *
local_policy:local_policy *
localedata:localedata *
log4j:log4j 1.2.15
log4j:log4j 1.2.17
lombok:lombok 1.16.4
lz4:lz4 1.3.0
mail:mail 1.4.4
management-agent:management-agent *
nashorn:nashorn 1.8.0_131-8u131-b11-2ubuntu1.16.04.3-b11
native-platform-freebsd-amd64:native-platform-freebsd-amd64 0.11
native-platform-freebsd-i386:native-platform-freebsd-i386 0.11
native-platform-linux-amd64:native-platform-linux-amd64 0.11
native-platform-linux-i386:native-platform-linux-i386 0.11
native-platform-osx-amd64:native-platform-osx-amd64 0.11
native-platform-osx-i386:native-platform-osx-i386 0.11
native-platform-windows-amd64:native-platform-windows-amd64 0.11
native-platform-windows-i386:native-platform-windows-i386 0.11
native-platform:native-platform 0.11
nekohtml:nekohtml 1.9.14
net.bytebuddy:byte-buddy-agent 1.7.4
net.bytebuddy:byte-buddy-dep 1.7.4
net.java:javax.annotation-api 1.2
org.apache.httpcomponents:httpclient 4.4.1
org.apache.httpcomponents:httpclient 4.5.2
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.opencsv:opencsv 2.3
net.sf.py4j:py4j 0.10.3
ngs-java:ngs-java 1.2.4
opencensus-api:opencensus-api 0.5.1
org.aeonbits.owner:owner 1.0.9
org.antlr:antlr4-runtime 4.5.3
org.apache.avro:avro-guava-dependencies 1.8.1
org.apache.avro:avro-ipc 1.7.7
org.apache.avro:avro-mapred 1.7.7
org.apache.avro:avro 1.8.1
org.apache.commons.beanutils:commons-beanutils 1.7.0
org.apache.commons:commons-collections4 4.1
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-compress 1.8.1
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-math 2.2
org.apache.commons:commons-vfs2 2.0
org.apache.curator:curator-client 2.7.1
org.apache.curator:curator-framework 2.7.1
org.apache.curator:curator-recipes 2.7.1
org.apache.directory.api.asn1.api:api-asn1-api 1.0.0-M20
org.apache.directory.api:api-util 1.0.0-M20
org.apache.directory.server.i18n:apacheds-i18n 2.0.0-M15
org.apache.directory.server.kerberos.codec:apacheds-kerberos-codec 2.0.0-M15
org.apache.geronimo.specs:geronimo-annotation_1.0_spec 1.0
org.apache.hadoop.zookeeper:zookeeper 3.4.6
org.apache.hadoop:hadoop-annotations 2.7.2
org.apache.hadoop:hadoop-auth 2.7.2
org.apache.hadoop:hadoop-client 2.7.2
org.apache.hadoop:hadoop-common 2.7.2
org.apache.hadoop:hadoop-hdfs 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-app 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-common 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-core 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-hs 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-jobclient 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-shuffle 2.7.2
org.apache.hadoop:hadoop-minicluster 2.7.2
org.apache.hadoop:hadoop-yarn-api 2.7.2
org.apache.hadoop:hadoop-yarn-client 2.7.2
org.apache.hadoop:hadoop-yarn-common 2.7.2
org.apache.hadoop:hadoop-yarn-server-applicationhistoryservice 2.7.2
org.apache.hadoop:hadoop-yarn-server-common 2.7.2
org.apache.hadoop:hadoop-yarn-server-nodemanager 2.7.2
org.apache.hadoop:hadoop-yarn-server-resourcemanager 2.7.2
org.apache.hadoop:hadoop-yarn-server-tests 2.7.2
org.apache.hadoop:hadoop-yarn-server-web-proxy 2.7.2
org.apache.htrace:htrace-core 3.1.0-incubating
org.apache.httpcomponents:httpclient 4.0.1
org.apache.httpcomponents:httpclient 4.1.1
org.apache.httpcomponents:httpclient 4.3.6
org.apache.httpcomponents:httpcore 4.0.1
org.apache.httpcomponents:httpcore 4.1
org.apache.httpcomponents:httpcore 4.3.3
org.apache.httpcomponents:httpcore 4.4.4
org.apache.ivy:ivy 2.2.0
org.apache.ivy:ivy 2.4.0
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.5
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.maven.wagon:wagon-file 2.4
org.apache.maven.wagon:wagon-http-shared4 2.4
org.apache.maven.wagon:wagon-http 2.4
org.apache.maven.wagon:wagon-provider-api 2.4
org.apache.maven:maven-aether-provider 3.0.4
org.apache.maven:maven-artifact 3.0.4
org.apache.maven:maven-compat 3.0.4
org.apache.maven:maven-core 3.0.4
org.apache.maven:maven-model-builder 3.0.4
org.apache.maven:maven-model 3.0.4
org.apache.maven:maven-plugin-api 3.0.4
org.apache.maven:maven-repository-metadata 3.0.4
org.apache.maven:maven-settings-builder 3.0.4
org.apache.maven:maven-settings 3.0.4
org.apache.mesos:mesos 0.21.1
org.apache.oro:oro 2.0.8
org.apache.parquet:parquet-avro 1.8.1
org.apache.parquet:parquet-column 1.8.2
org.apache.parquet:parquet-common 1.8.2
org.apache.parquet:parquet-encoding 1.8.2
org.apache.parquet:parquet-format 2.3.0-incubating
org.apache.parquet:parquet-hadoop 1.8.1
org.apache.parquet:parquet-jackson 1.8.1
org.apache.parquet:parquet-scala_2.10 1.8.2
org.apache.spark:spark-catalyst_2.11 2.0.2
org.apache.spark:spark-core_2.11 2.0.2
org.apache.spark:spark-graphx_2.11 2.0.2
org.apache.spark:spark-launcher_2.11 2.0.2
org.apache.spark:spark-mllib-local_2.11 2.0.2
org.apache.spark:spark-mllib_2.11 2.0.2
org.apache.spark:spark-network-common_2.11 2.0.2
org.apache.spark:spark-network-shuffle_2.11 2.0.2
org.apache.spark:spark-sketch_2.11 2.0.2
org.apache.spark:spark-sql_2.11 2.0.2
org.apache.spark:spark-streaming_2.11 2.0.2
org.apache.spark:spark-tags_2.11 2.0.2
org.apache.spark:spark-unsafe_2.11 2.0.2
org.apache.tools.ant.launch.Launcher:ant-launcher 1.9.4
org.apache.tools.ant.launch.Launcher:ant-launcher 1.9.6
org.apache.tools.ant:ant 1.9.4
org.apache.tools.ant:ant 1.9.6
org.apache.xbean:xbean-asm-util 4.4
org.apache.xbean:xbean-asm5-shaded 4.4
org.apache.xbean:xbean-reflect 3.4
org.apache.xerces.impl.Version:xercesImpl 2.9.1
org.apache.xmlcommons.Version:xml-apis 1.3.04
org.apache.zookeeper:zookeeper 3.4.6-tests
org.apache:commons-beanutils-core 1.8.0
org.apache:commons-httpclient 3.1
org.apache:jsp-api 2.1
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.23.0
org.bdgenomics.adam:adam-core-spark2_2.11 0.23.0
org.bdgenomics.bdg-formats:bdg-formats 0.11.3
org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.13
org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.13
org.bdgenomics.utils:utils-io-spark2_2.11 0.2.13
org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.13
org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.13
org.bouncycastle.bcpg:bcpg-jdk15on 1.51
org.bouncycastle.bcprovider:bcprov-jdk15on 1.51
org.broadinstitute.gatk.engine.CommandLineGATK:GenomeAnalysisTK_3.8 1-1-gdde23f56a6
org.broadinstitute.gatk:gatk-engine 3.9-SNAPSHOT
org.broadinstitute.gatk:gatk-package-distribution 3.9-SNAPSHOT
org.broadinstitute.gatk:gatk-tools-protected 3.9-SNAPSHOT
org.broadinstitute.gatk:gatk-tools-public 3.9-SNAPSHOT
org.broadinstitute.gatk:gatk-utils 3.9-SNAPSHOT
org.broadinstitute.hellbender.Main:gatk-package 4.beta.6-169-g1efafd2-SNAPSHOT-local
org.broadinstitute.hellbender.Main:gatk-package 4.beta.6-169-g1efafd2-SNAPSHOT-spark
org.broadinstitute.hellbender.Main:gatk 4.beta.6-169-g1efafd2-SNAPSHOT
org.bytedeco:javacpp 1.2.3
org.codehaus.janino.commons-compiler:commons-compiler 2.7.8
org.codehaus.jettison:jettison 1.1
org.codehaus.plexus:plexus-classworlds 2.4
org.codehaus.plexus:plexus-component-annotations 1.5.5
org.codehaus.plexus:plexus-container-default 1.5.5
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-interpolation 1.14
org.codehaus.plexus:plexus-utils 1.5.6
org.codehaus.plexus:plexus-utils 2.0.6
org.cohehaus.janino:janino 2.7.8
org.debian.security.UpdateCertificates:ca-certificates-java *
org.dom4j:dom4j 1.6.1
org.eclipse.jdt.core:core 3.1.1
org.eclipse.jdt:org.eclipse.jdt.annotation 1.1.0
org.eclipse.jetty:jetty-continuation 9.2.16.v20160414
org.eclipse.jetty:jetty-http 9.2.16.v20160414
org.eclipse.jetty:jetty-io 9.2.16.v20160414
org.eclipse.jetty:jetty-plus 9.2.16.v20160414
org.eclipse.jetty:jetty-security 9.2.16.v20160414
org.eclipse.jetty:jetty-server 9.2.16.v20160414
org.eclipse.jetty:jetty-servlet 9.2.16.v20160414
org.eclipse.jetty:jetty-servlets 9.2.16.v20160414
org.eclipse.jetty:jetty-util 9.2.16.v20160414
org.eclipse.jgit:org.eclipse.jgit 4.1.1.201511131810-r
org.freemarker.freemarker:freemarker 2.3.23
org.fusesource.hawtjni:hawtjni-runtime 1.9
org.fusesource.jansi:jansi-linux32 1.6
org.fusesource.jansi:jansi-linux64 1.6
org.fusesource.jansi:jansi-native 1.6
org.fusesource.jansi:jansi-osx 1.6
org.fusesource.jansi:jansi-windows32 1.6
org.fusesource.jansi:jansi-windows64 1.6
org.fusesource.jansi:jansi 1.13
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
org.glassfish.hk2.external:javax.inject 2.4.0-b34
org.glassfish.hk2:hk2-api 2.4.0-b34
org.glassfish.hk2:hk2-locator 2.4.0-b34
org.glassfish.hk2:hk2-utils 2.4.0-b34
org.glassfish.hk2:osgi-resource-locator 1.0.1
org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
org.glassfish.jersey.core:jersey-client 2.22.2
org.glassfish.jersey.core:jersey-common 2.22.2
org.glassfish.jersey.core:jersey-server 2.22.2
org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
org.glassfish:javax.annotation-api 1.2
org.glassfish:javax.servlet-api 3.1.0
org.gradle.launcher.GradleMain:gradle-launcher 3.1
org.hamcrest:hamcrest-core 1.1
org.hammerlab:args4s_2.11 1.0.0
org.hammerlab:genomic-loci_2.11 1.4.4
org.hammerlab:iterator_2.11 1.0.0
org.hammerlab:string-utils_2.11 1.0.0
org.javassist:javassist 3.16.1-GA
org.javassist:javassist 3.18.2-GA
org.jaxen:jaxen 1.1
org.jctools:jctools-core 2.0.2
org.jdom2.filter:jdom2 2.0.5
org.jetbrains.kotlin:kotlin-compiler-embeddable 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-runtime 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-stdlib 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-test-junit 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-test 1.1.0-dev-2053
org.jgrapht:jgrapht-core 0.9.1
org.joda:joda-time 2.8.2
org.joda:joda-time 2.9.2
org.jpmml:pmml-model 1.2.15
org.jpmml:pmml-schema 1.2.15
org.json:json 20160810
org.json4s:json4s-ast_2.11 3.2.11
org.json4s:json4s-core_2.11 3.2.11
org.json4s:json4s-jackson_2.11 3.2.11
org.jvnet:tiger-types 1.4
org.kohsuke.args4j:args4j 2.33
org.mockito.mockito-core:mockito-core 2.10.0
org.mortbay.jetty:jetty-annotations 6.1.25
org.mortbay.jetty:jetty-naming 6.1.25
org.mortbay.jetty:jetty-plus 6.1.25
org.mortbay.jetty:jetty-util 6.1.25
org.mortbay.jetty:jetty-util 6.1.26
org.mortbay.jetty:jetty 6.1.25
org.mortbay.jetty:jetty 6.1.26
org.mortbay.jetty:jsp-2.1 6.1.14
org.mortbay.jetty:jsp-api-2.1 6.1.14
org.mortbay.jetty:servlet-api 2.5-20081211
org.mozilla.javascript.tools.shell.Main:rhino 1.7R3
org.nd4j:nd4j-api 0.5.0
org.nd4j:nd4j-buffer 0.5.0
org.nd4j:nd4j-common 0.5.0
org.nd4j:nd4j-context 0.5.0
org.nd4j:nd4j-kryo_2.11 0.5.0
org.nd4j:nd4j-native-api 0.5.0
org.nd4j:nd4j-native-platform 0.5.0
org.nd4j:nd4j-native 0.5.0
org.objectweb.asm.all:asm-all 5.1
org.objectweb.asm.commons:asm-commons 5.0.3
org.objectweb.asm.tree:asm-tree 5.0.3
org.objectweb.asm:asm 4.2
org.objectweb.asm:asm 5.0.3
org.objenesis:objenesis 1.2
org.objenesis:objenesis 2.1
org.objenesis:objenesis 2.6
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.reflections:reflections 0.9.10
org.reflections:reflections 0.9.9-RC1
org.roaringbitmap:RoaringBitmap 0.5.11
org.scala-lang.modules.scala-parser-combinators:scala-parser-combinators_2.11 1.0.1
org.scala-lang.modules.scala-xml:scala-xml_2.11 1.0.2
org.scala-lang.scala-compiler:scala-compiler 2.11.0
org.scala-lang.scala-library:scala-library 2.11.8
org.scala-lang.scala-reflect:scala-reflect 2.11.8
org.scalanlp:breeze-macros_2.11 0.11.2
org.scalanlp:breeze_2.11 0.11.2
org.scalatest:scalatest_2.11 2.2.6
org.seqdoop:hadoop-bam 7.9.1
org.simpleframework:simple-xml 2.0.4
org.simpleframework:simple 4.1.21
org.slf4j:jcl-over-slf4j 1.7.10
org.slf4j:jcl-over-slf4j 1.7.16
org.slf4j:jul-to-slf4j 1.7.10
org.slf4j:log4j-over-slf4j 1.7.10
org.slf4j:slf4j-api 1.6.1
org.slf4j:slf4j-api 1.7.10
org.slf4j:slf4j-api 1.7.2
org.slf4j:slf4j-api 1.7.25
org.slf4j:slf4j-log4j12 1.7.21
org.slf4j:slf4j-log4j12 1.7.5
org.sonatype.aether:aether-api 1.13.1
org.sonatype.aether:aether-connector-wagon 1.13.1
org.sonatype.aether:aether-impl 1.13.1
org.sonatype.aether:aether-spi 1.13.1
org.sonatype.aether:aether-util 1.13.1
org.sonatype.oss:drmaa-common 1.0
org.sonatype.oss:drmaa-gridengine 6.2u5
org.sonatype.oss:kryo-serializers 0.41
org.sonatype.plexus:plexus-cipher 1.7
org.sonatype.plexus:plexus-sec-dispatcher 1.3
org.sonatype.pmaven:pmaven-common 0.8-SNAPSHOT
org.sonatype.pmaven:pmaven-groovy 0.8-SNAPSHOT
org.spark-project.spark:unused 1.0.0
org.spire-math:spire-macros_2.11 0.11.0
org.spire-math:spire_2.11 0.11.0
org.testng:testng 6.11
org.testng:testng 6.3.1
org.threeten:threetenbp 1.3.3
org.tukaani.xz:xz 1.5
org.typelevel:machinist_2.11 0.4.1
org.w3c.dom.ls:xercesImpl 2.9.1
org.xerial.snappy.snappy-java:snappy-java 1.1.4
org.xerial.snappy:snappy-java 1.0.3-rc3
org.xerial:sqlite-jdbc 3.20.1
org.xml.sax:xercesImpl 2.9.1
org.xml.sax:xml-apis 1.3.04
org.yaml:snakeyaml 1.17
org.yaml:snakeyaml 1.6
picard:picard 2.17.2
picard:picard 2.17.2-sources
proto-google-common-protos:proto-google-common-protos 0.1.13
proto-google-iam-v1:proto-google-iam-v1 0.1.13
regexp:regexp 1.3
resources:resources 1.8.0_131
rt:rt 1.8.0_131
sa-jdi:sa-jdi *
scalap:scalap 2.11.0
shadow:shadow 1.2.3
stax-api:stax-api 1.0-2
tools:tools *
validation-api:validation-api 1.1.0.Final
xmlenc:xmlenc 0.52
xmlpull:xmlpull 1.1.3.1
xpp3_min:xpp3_min 1.1.4c
zipfs:zipfs 1.8.0_131

java 1.8.0_131-8u131-b11-2ubuntu1.16.04.3-b11
python 2.7.12
python 3.5.2
python 3.6.2
python 3.6.3

python-dateutil 2.6.1
Keras 2.1.1
Markdown 2.6.9
PyGObject 3.20.0
PySocks 1.6.7
PyYAML 3.12
SocksiPy-branch 1.01
Theano 0.9.0
Werkzeug 0.12.2
argparse 1.2.1
asn1crypto 0.22.0
bleach 1.5.0
boto 2.48.0
certifi 2016.2.28
certifi 2017.07.27.1
cffi 1.10.0
chardet 3.0.4
conda 4.3.30
coverage 3.7.1
cryptography 2.0.3
cycler 0.10.0
enum34 1.1.6
gatkpythonpackages 0.1
h5py 2.7.1
html5lib 0.9999999
idna 2.6
joblib 0.11
matplotlib 2.1.0
mock 1.0.1
mock 2.0.0
nose 1.3.3
numpy 1.13.3
oauth2client 1.2
oauth2client 2.2.0
ordereddict 1.1
pandas 0.21.0
patsy 0.4.1
pip 8.1.1
pip 9.0.1
protobuf 3.5.0.post1
pyOpenSSL 17.2.0
pycosat 0.6.2
pycparser 2.18
pycurl 7.43.0
pymc3 3.1
pyparsing 2.2.0
python-apt 1.1.0.b1
pytz 2017.3
requests 2.18.4
rsa 3.1.4
ruamel_yaml 0.11.14
scipy 1.0.0
scour 0.32
setuptools 20.7.0
setuptools 36.4.0
setuptools 36.5.0.post20170921
simplejson 3.5.2
simplejson 3.6.5
six 1.10.0
six 1.11.0
tensorflow-tensorboard 0.4.0rc3
tensorflow 1.4.0
tqdm 4.19.4
unattended-upgrades 0.1
unittest2 0.5.1
urllib3 1.22
wheel 0.29.0
wsgiref 0.1.2