broadinstitute/gatk-test : 4.0-prerelease-1efafd2b5

Latest release: over 7 years ago - 53 downloads - 1,213 dependencies

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Dependencies

ubuntu/adduser 3.113 nmu3ubuntu4
ubuntu/apt-utils 1.2.24
ubuntu/apt 1.2.24
ubuntu/aufs-tools 1:3.2 20130722-1.1ubuntu1
ubuntu/autoconf 2.69-9
ubuntu/automake 1:1.15-4ubuntu1
ubuntu/autotools-dev 20150820.1
ubuntu/base-files 9.4ubuntu4.5
ubuntu/base-passwd 3.5.39
ubuntu/bash 4.3-14ubuntu1.2
ubuntu/bedtools 2.25.0-1
ubuntu/binutils 2.26.1-1ubuntu1~16.04.5
ubuntu/bsdmainutils 9.0.6ubuntu3
ubuntu/bsdutils 1:2.27.1-6ubuntu3.3
ubuntu/btrfs-tools 4.4-1ubuntu1
ubuntu/build-essential 12.1ubuntu2
ubuntu/bzip2-doc 1.0.6-8
ubuntu/bzip2 1.0.6-8
ubuntu/ca-certificates-java 20160321
ubuntu/ca-certificates 20170717~16.04.1
ubuntu/cdbs 0.4.130ubuntu2
ubuntu/coreutils 8.25-2ubuntu3~16.04
ubuntu/cpp-5 5.4.0-6ubuntu1~16.04.5
ubuntu/cpp 4:5.3.1-1ubuntu1
ubuntu/cron 3.0pl1-128ubuntu2
ubuntu/curl 7.47.0-1ubuntu2.4
ubuntu/dash 0.5.8-2.1ubuntu2
ubuntu/dbus 1.10.6-1ubuntu3.3
ubuntu/debconf 1.5.58ubuntu1
ubuntu/debhelper 9.20160115ubuntu3
ubuntu/debianutils 4.7
ubuntu/default-jre-headless 2:1.8-56ubuntu2
ubuntu/default-jre 2:1.8-56ubuntu2
ubuntu/dh-python 2.20151103ubuntu1.1
ubuntu/dh-strip-nondeterminism 0.015-1
ubuntu/dh-translations 129
ubuntu/diffutils 1:3.3-3
ubuntu/distro-info-data 0.28ubuntu0.5
ubuntu/dpkg-dev 1.18.4ubuntu1.2
ubuntu/dpkg-sig 0.13.1 nmu2
ubuntu/dpkg 1.18.4ubuntu1.2
ubuntu/e2fslibs 1.42.13-1ubuntu1
ubuntu/e2fsprogs 1.42.13-1ubuntu1
ubuntu/fakeroot 1.20.2-1ubuntu1
ubuntu/file 1:5.25-2ubuntu1
ubuntu/findutils 4.6.0 git 20160126-2
ubuntu/libaec0 0.3.2-1
ubuntu/libalgorithm-diff-perl 1.19.03-1
ubuntu/libalgorithm-diff-xs-perl 0.04-4build1
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ubuntu/libatk1.0-0 2.18.0-1
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ubuntu/openjdk-8-jdk-headless 8u131-b11-2ubuntu1.16.04.3
ubuntu/openjdk-8-jdk 8u131-b11-2ubuntu1.16.04.3
ubuntu/openjdk-8-jre-headless 8u131-b11-2ubuntu1.16.04.3
ubuntu/openjdk-8-jre 8u131-b11-2ubuntu1.16.04.3
ubuntu/openssh-client 1:7.2p2-4ubuntu2.2
ubuntu/openssl 1.0.2g-1ubuntu4.8
ubuntu/passwd 1:4.2-3.1ubuntu5.3
ubuntu/patch 2.7.5-1
ubuntu/perl-base 5.22.1-9
ubuntu/perl-modules-5.22 5.22.1-9
ubuntu/perl 5.22.1-9
ubuntu/po-debconf 1.0.19
ubuntu/procps 2:3.3.10-4ubuntu2.3
ubuntu/python-apt-common 1.1.0~beta1build1
ubuntu/python-dev 2.7.11-1
ubuntu/python-minimal 2.7.11-1
ubuntu/python-pip-whl 8.1.1-2ubuntu0.4
ubuntu/python-pkg-resources 20.7.0-1
ubuntu/python-scour 0.32-1
ubuntu/python-setuptools 20.7.0-1
ubuntu/python-six 1.10.0-3
ubuntu/python2.7-dev 2.7.12-1ubuntu0~16.04.1
ubuntu/python2.7-minimal 2.7.12-1ubuntu0~16.04.1
ubuntu/python2.7 2.7.12-1ubuntu0~16.04.1
ubuntu/python3-apt 1.1.0~beta1build1
ubuntu/python3-dbus 1.2.0-3
ubuntu/python3-dev 3.5.1-3
ubuntu/python3-gi 3.20.0-0ubuntu1
ubuntu/python3-minimal 3.5.1-3
ubuntu/python3-pip 8.1.1-2ubuntu0.4
ubuntu/python3-pkg-resources 20.7.0-1
ubuntu/python3-pycurl 7.43.0-1ubuntu1
ubuntu/python3-setuptools 20.7.0-1
ubuntu/python3-software-properties 0.96.20.7
ubuntu/python3-wheel 0.29.0-1
ubuntu/python3.5-dev 3.5.2-2ubuntu0~16.04.3
ubuntu/python3.5-minimal 3.5.2-2ubuntu0~16.04.3
ubuntu/python3.5 3.5.2-2ubuntu0~16.04.3
ubuntu/python3 3.5.1-3
ubuntu/python 2.7.11-1
ubuntu/r-base-core 3.2.5-1xenial
ubuntu/r-base-dev 3.2.5-1xenial
ubuntu/r-doc-html 3.4.2-2xenial2
ubuntu/readline-common 6.3-8ubuntu2
ubuntu/rename 0.20-4
ubuntu/rsync 3.1.1-3ubuntu1
ubuntu/samtools 0.1.19-1ubuntu1
ubuntu/sed 4.2.2-7
ubuntu/sensible-utils 0.0.9
ubuntu/sgml-base 1.26 nmu4ubuntu1
ubuntu/shared-mime-info 1.5-2ubuntu0.1
ubuntu/software-properties-common 0.96.20.7
ubuntu/systemd-sysv 229-4ubuntu21
ubuntu/systemd 229-4ubuntu21
ubuntu/sysv-rc 2.88dsf-59.3ubuntu2
ubuntu/sysvinit-utils 2.88dsf-59.3ubuntu2
ubuntu/tar 1.28-2.1ubuntu0.1
ubuntu/tcpd 7.6.q-25
ubuntu/tzdata 2016j-0ubuntu0.16.04
ubuntu/ubuntu-keyring 2012.05.19
ubuntu/ucf 3.0036
ubuntu/unattended-upgrades 0.90ubuntu0.8
ubuntu/unzip 6.0-20ubuntu1
ubuntu/util-linux 2.27.1-6ubuntu3.3
ubuntu/wget 1.17.1-1ubuntu1.3
ubuntu/x11-common 1:7.7 13ubuntu3
ubuntu/x11-utils 7.7 3
ubuntu/x11-xserver-utils 7.7 7
ubuntu/x11proto-core-dev 7.0.31-1~ubuntu16.04.2
ubuntu/x11proto-input-dev 2.3.1-1
ubuntu/x11proto-kb-dev 1.0.7-0ubuntu1
ubuntu/xauth 1:1.0.9-1ubuntu2
ubuntu/xdg-user-dirs 0.15-2ubuntu6
ubuntu/xdg-utils 1.1.1-1ubuntu1.16.04.1
ubuntu/xml-core 0.13 nmu2
ubuntu/xorg-sgml-doctools 1:1.11-1
ubuntu/xtrans-dev 1.3.5-1
ubuntu/xz-utils 5.1.1alpha 20120614-2ubuntu2
ubuntu/zip 3.0-11
ubuntu/zlib1g-dev 1:1.2.8.dfsg-2ubuntu4.1
ubuntu/zlib1g 1:1.2.8.dfsg-2ubuntu4.1

com.twitter:chill-java 0.8.0
JLargeArrays:JLargeArrays 1.5
US_export_policy:US_export_policy *
annotations:annotations 2.0.1
aopalliance:aopalliance 1.0
api-common:api-common 1.1.0
args4j:args4j 2.33
arpack_combined_all:arpack_combined_all 0.1
asm:asm 3.1
barclay:barclay 2.0.0
biz.aQute.bndlib:biz.aQute.bndlib 3.2.0
bsh:bsh 2.0b4
cglib:cglib 2.2.1-v20090111
charsets:charsets *
cldrdata:cldrdata *
com.amazonaws:aws-java-sdk-core 1.11.6
com.amazonaws:aws-java-sdk-kms 1.11.6
com.twitter:chill_2.11 0.8.0
com.amazonaws:aws-java-sdk-s3 1.11.6
com.beust:jcommander 1.12
com.clearspring.analytics:stream 2.7.0
com.esotericsoftware.kryo:kryo 2.20
com.esotericsoftware.minlog:minlog 1.2
com.esotericsoftware.reflectasm:reflectasm 1.07
com.esotericsoftware:kryo-shaded 3.0.3
com.esotericsoftware:kryo 3.0.3
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.10.0
com.esotericsoftware:reflectasm 1.10.1
com.fasterxml.jackson.core:jackson-annotations 2.4.0
com.fasterxml.jackson.core:jackson-annotations 2.6.5
com.fasterxml.jackson.core:jackson-annotations 2.6.6
com.fasterxml.jackson.core:jackson-core 2.1.3
com.fasterxml.jackson.core:jackson-core 2.4.0
com.fasterxml.jackson.core:jackson-core 2.6.5
com.fasterxml.jackson.core:jackson-core 2.6.6
com.fasterxml.jackson.core:jackson-databind 2.4.0
com.fasterxml.jackson.core:jackson-databind 2.6.5
com.fasterxml.jackson.core:jackson-databind 2.6.6
com.fasterxml.jackson.module.jackson.module.scala:jackson-module-scala_2.11 2.6.5
com.fasterxml.jackson.module:jackson-module-paranamer 2.6.5
com.github.fommil.netlib:core 1.1
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil:jniloader 1.1
com.github.jsr203hadoop:jsr203hadoop 1.0.3
com.github.rwl:jtransforms 2.4.0
com.github.wendykierp:JTransforms 3.1
com.google.api-client:google-api-client-jackson2 1.20.0
com.google.api-client:google-api-client-java6 1.22.0
com.google.api-client:google-api-client 1.22.0
com.google.apis:google-api-services-genomics v1-rev527-1.22.0
com.google.apis:google-api-services-storage v1-rev108-1.22.0
com.google.auth:google-auth-library-credentials 0.7.0
com.google.auth:google-auth-library-credentials 0.7.1
com.google.auth:google-auth-library-oauth2-http 0.7.0
com.google.auth:google-auth-library-oauth2-http 0.7.1
com.google.auto.service:auto-service 1.0-rc2
com.google.auto.value:auto-value 1.2
com.google.auto:auto-common 1.0-SNAPSHOT
com.google.cloud.bigdataoss:gcs-connector 1.6.1-hadoop2
com.google.cloud.bigdataoss:gcsio 1.6.1
com.google.cloud.bigdataoss:util-hadoop 1.6.1-hadoop2
com.google.cloud.bigdataoss:util 1.6.1
gradle-maven:gradle-maven 3.1
com.google.cloud.genomics:gatk-tools-java 1.1
com.google.cloud.genomics:google-genomics-utils v1-0.10
com.google.cloud:google-cloud-core-http 1.2.3
com.google.cloud:google-cloud-core-http 1.2.4-SNAPSHOT
com.google.cloud:google-cloud-core 1.2.3
com.google.cloud:google-cloud-core 1.2.4-SNAPSHOT
com.google.cloud:google-cloud-nio 0.20.4-alpha-SNAPSHOT
com.google.cloud:google-cloud-storage 1.2.3
com.google.cloud:google-cloud-storage 1.2.4-SNAPSHOT
com.google.code.gson:gson 2.7
com.google.errorprone:error_prone_annotations 2.0.19
com.google.guava:guava-jdk5 17.0
com.google.guava:guava 11.0.2
com.google.guava:guava 14.0.1
com.google.guava:guava 18.0
com.google.guava:guava 19.0
com.google.guava:guava 20.0
com.google.http-client:google-http-client-appengine 1.21.0
com.google.http-client:google-http-client-jackson2 1.22.0
com.google.http-client:google-http-client-jackson 1.21.0
com.google.http-client:google-http-client 1.22.0
com.google.inject.servlet:guice-servlet 3.0
com.google.inject:guice 3.0
com.google.jimfs:jimfs 1.1
com.google.oauth-client:google-oauth-client-java6 1.22.0
com.google.oauth-client:google-oauth-client-jetty 1.22.0
com.google.oauth-client:google-oauth-client 1.22.0
com.google.protobuf:protobuf-java-util 3.3.0
com.google.protobuf:protobuf-java-util 3.3.1
com.google.protobuf:protobuf-java 2.5.0
com.google.protobuf:protobuf-java 3.0.0-beta-1
com.google.protobuf:protobuf-java 3.3.0
com.googlecode.jatl:jatl 0.2.2
com.googlecode.javaewah:JavaEWAH 0.7.9
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.protobuf-java-format:protobuf-java-format 1.2
com.intel:genomicsdb 0.8.1-proto-3.0.0-beta-1 uuid-static
com.jamesmurty.utils:java-xmlbuilder 0.4
com.jcraft:jsch 0.1.53
com.netflix.servo#servo-core:servo-core 0.12.12
com.ning:compress-lzf 1.0.3
com.opencsv:opencsv 3.4
com.sun.jersey.contribs:jersey-guice 1.9
com.sun.jersey:jersey-client 1.9
com.sun.jersey:jersey-core 1.9
com.sun.jersey:jersey-json 1.9
com.sun.jersey:jersey-server 1.9
com.sun.xml.bind:jaxb-impl 2.2.3-1
com.sun:activation 1.1
com.sun:jce 1.8.0_131
com.sun:sunec 1.8.0_131
com.sun:sunjce_provider 1.8.0_131
com.sun:sunpkcs11 1.8.0_131
com.thoughtworks.paranamer:paranamer 2.7
com.thoughtworks.qdox:qdox 1.12
com.thoughtworks.xstream:xstream 1.4.7
net.java:javax.servlet-api 3.1.0
net.java:javax.ws.rs-api 2.0.1
gradle-language-scala:gradle-language-scala 3.1
com.univocity:univocity-parsers 2.1.1
commons-cli:commons-cli 1.2
commons-codec:commons-codec 1.10
commons-codec:commons-codec 1.6
commons-codec:commons-codec 1.9
commons-collections:commons-collections 3.2.2
commons-configuration:commons-configuration 1.6
commons-daemon:commons-daemon 1.0.13
commons-digester:commons-digester 1.8
commons-io:commons-io 2.1
commons-io:commons-io 2.2
commons-io:commons-io 2.4
commons-io:commons-io 2.5
commons-lang:commons-lang 2.5
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.1.3
commons-logging:commons-logging 1.2
commons-net:commons-net 3.1
dnsns:dnsns *
dt:dt *
fastutil:fastutil 7.0.6
gatk-bwamem-jni:gatk-bwamem-jni 1.0.4
gatk-fermilite-jni:gatk-fermilite-jni 1.1.0
gatk-native-bindings:gatk-native-bindings 1.0.0
gax:gax 1.4.2
gettext:gettext *
gkl:gkl 0.8.2
google-api-services-genomics-v1-rev527:google-api-services-genomics-v1-rev527 1.22.0
google-api-services-storage-v1-rev108:google-api-services-storage-v1-rev108 1.22.0
google-genomics-utils-v1:google-genomics-utils-v1 0.10
gov.nist.math.jama:gov.nist.math.jama 1.1.1
gradle-announce:gradle-announce 3.1
gradle-antlr:gradle-antlr 3.1
gradle-base-services-groovy:gradle-base-services-groovy 3.1
gradle-base-services:gradle-base-services 3.1
gradle-cli:gradle-cli 3.1
gradle-code-quality:gradle-code-quality 3.1
gradle-composite:gradle-composite builds-3.1
gradle-core:gradle-core 3.1
gradle-dependency-management:gradle-dependency-management 3.1
gradle-diagnostics:gradle-diagnostics 3.1
gradle-docs:gradle-docs 3.1
gradle-download-task:gradle-download-task 2.1.0
gradle-ear:gradle-ear 3.1
gradle-git-version:gradle-git-version 0.5.1
gradle-ide-native:gradle-ide-native 3.1
gradle-ide-play:gradle-ide-play 3.1
gradle-ide:gradle-ide 3.1
gradle-installation-beacon:gradle-installation-beacon 3.1
gradle-ivy:gradle-ivy 3.1
gradle-jacoco:gradle-jacoco 3.1
gradle-javascript:gradle-javascript 3.1
gradle-jetty:gradle-jetty 3.1
gradle-jvm-services:gradle-jvm-services 3.1
gradle-language-groovy:gradle-language-groovy 3.1
gradle-language-java:gradle-language-java 3.1
gradle-language-jvm:gradle-language-jvm 3.1
gradle-language-native:gradle-language-native 3.1
gradle-logging:gradle-logging 3.1
gradle-messaging:gradle-messaging 3.1
gradle-model-core:gradle-model-core 3.1
gradle-model-groovy:gradle-model-groovy 3.1
gradle-native:gradle-native 3.1
gradle-open-api:gradle-open-api 3.1
gradle-osgi:gradle-osgi 3.1
gradle-platform-base:gradle-platform-base 3.1
gradle-platform-jvm:gradle-platform-jvm 3.1
gradle-platform-native:gradle-platform-native 3.1
gradle-platform-play:gradle-platform-play 3.1
gradle-plugin-development:gradle-plugin-development 3.1
gradle-plugin-use:gradle-plugin-use 3.1
gradle-plugins:gradle-plugins 3.1
gradle-process-services:gradle-process-services 3.1
gradle-publish:gradle-publish 3.1
gradle-reporting:gradle-reporting 3.1
gradle-resources-http:gradle-resources-http 3.1
gradle-resources-s3:gradle-resources-s3 3.1
gradle-resources-sftp:gradle-resources-sftp 3.1
gradle-resources:gradle-resources 3.1
gradle-scala:gradle-scala 3.1
gradle-script-kotlin:gradle-script-kotlin 0.3.2
gradle-signing:gradle-signing 3.1
gradle-task-cache-http:gradle-task-cache-http 3.1
gradle-test-kit:gradle-test-kit 3.1
gradle-testing-base:gradle-testing-base 3.1
gradle-testing-jvm:gradle-testing-jvm 3.1
gradle-testing-native:gradle-testing-native 3.1
gradle-tooling-api:gradle-tooling-api 3.1
gradle-tooling-api:gradle-tooling-api builders-3.1
gradle-ui:gradle-ui 3.1
gradle-versions-plugin:gradle-versions-plugin 0.12.0
gradle-wrapper:gradle-wrapper 3.1
gradle:gradle build-comparison-3.1
gradle:gradle build-init-3.1
groovy-all:groovy-all 2.4.7
groovy-backports-compat23:groovy-backports-compat23 2.4.4
grpc-auth:grpc-auth 1.6.1
grpc-context:grpc-context 1.6.1
grpc-core:grpc-core 1.6.1
grpc-google-genomics-v1:grpc-google-genomics-v1 0.1.0
grpc-netty:grpc-netty 1.6.1
grpc-protobuf-lite:grpc-protobuf-lite 1.6.1
grpc-protobuf:grpc-protobuf 1.6.1
grpc-stub:grpc-stub 1.6.1
hamcrest-all:hamcrest-all 1.3
hamcrest-core:hamcrest-core 1.3
hdf5-java-bindings:hdf5-java-bindings 1.1.0-hdf5_2.11.0
htsjdk:htsjdk 2.13.2
icedtea-sound:icedtea-sound *
instrumentation-api:instrumentation-api 0.4.3
io.dropwizard.metrics:metrics-core 3.1.2
io.dropwizard.metrics:metrics-graphite 3.1.2
io.dropwizard.metrics:metrics-json 3.1.2
io.dropwizard.metrics:metrics-jvm 3.1.2
io.netty:netty-all 4.0.29.Final
io.netty:netty-buffer 4.1.14.Final
net.razorvine:pyrolite 4.13
io.netty:netty-codec-http2 4.1.14.Final
io.netty:netty-codec-http 4.1.14.Final
io.netty:netty-codec-socks 4.1.14.Final
io.netty:netty-codec 4.1.14.Final
io.netty:netty-common 4.1.14.Final
io.netty:netty-handler-proxy 4.1.14.Final
io.netty:netty-handler 4.1.14.Final
io.netty:netty-resolver 4.1.14.Final
io.netty:netty-transport 4.1.14.Final
io.netty:netty 3.8.0.Final
jaccess:jaccess *
jackson-core-asl:jackson-core-asl 1.9.13
jackson-jaxrs:jackson-jaxrs 1.9.13
jackson-mapper-asl:jackson-mapper-asl 1.9.13
jackson-xc:jackson-xc 1.9.13
jarhdf5:jarhdf5 2.11.0
java-getopt:java-getopt 1.0.13
javax.ws.rs-api:javax.ws.rs-api 2.0.1
jaxb-api:jaxb-api 2.2.2
jcifs:jcifs 1.3.17
jcip-annotations:jcip-annotations 1.0
jcommander:jcommander 1.64
jconsole:jconsole *
jdtCompilerAdapter:jdtCompilerAdapter *
jets3t:jets3t 0.9.0
jgraph:jgraph *
jhdf:jhdf *
jhdf4obj:jhdf4obj *
jhdf5:jhdf5 *
jhdf5obj:jhdf5obj *
jhdfobj:jhdfobj *
jhdfview:jhdfview *
jline:jline 0.9.94
joda-time:joda-time 2.9.2
jsch:jsch 0.1.42
jsr305:jsr305 3.0.0
jsse:jsse 1.8.0_131
junit:junit 4.10
junit:junit 4.12
kotlin-reflect:kotlin-reflect 1.1.0-dev-2053
kryo-serializers:kryo-serializers 0.41
libintl:libintl *
local_policy:local_policy *
localedata:localedata *
log4j:log4j 1.2.15
log4j:log4j 1.2.17
lombok:lombok 1.16.4
lz4:lz4 1.3.0
mail:mail 1.4.4
management-agent:management-agent *
nashorn:nashorn 1.8.0_131-8u131-b11-2ubuntu1.16.04.3-b11
native-platform-freebsd-amd64:native-platform-freebsd-amd64 0.11
native-platform-freebsd-i386:native-platform-freebsd-i386 0.11
native-platform-linux-amd64:native-platform-linux-amd64 0.11
native-platform-linux-i386:native-platform-linux-i386 0.11
native-platform-osx-amd64:native-platform-osx-amd64 0.11
native-platform-osx-i386:native-platform-osx-i386 0.11
native-platform-windows-amd64:native-platform-windows-amd64 0.11
native-platform-windows-i386:native-platform-windows-i386 0.11
native-platform:native-platform 0.11
nekohtml:nekohtml 1.9.14
net.bytebuddy:byte-buddy-agent 1.7.4
net.bytebuddy:byte-buddy-dep 1.7.4
net.java:javax.annotation-api 1.2
org.apache.httpcomponents:httpclient 4.4.1
org.apache.httpcomponents:httpclient 4.5.2
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.opencsv:opencsv 2.3
net.sf.py4j:py4j 0.10.3
ngs-java:ngs-java 1.2.4
opencensus-api:opencensus-api 0.5.1
org.aeonbits.owner:owner 1.0.9
org.antlr:antlr4-runtime 4.5.3
org.apache.avro:avro-guava-dependencies 1.8.1
org.apache.avro:avro-ipc 1.7.7
org.apache.avro:avro-mapred 1.7.7
org.apache.avro:avro 1.8.1
org.apache.commons.beanutils:commons-beanutils 1.7.0
org.apache.commons:commons-collections4 4.1
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-compress 1.8.1
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-math 2.2
org.apache.commons:commons-vfs2 2.0
org.apache.curator:curator-client 2.7.1
org.apache.curator:curator-framework 2.7.1
org.apache.curator:curator-recipes 2.7.1
org.apache.directory.api.asn1.api:api-asn1-api 1.0.0-M20
org.apache.directory.api:api-util 1.0.0-M20
org.apache.directory.server.i18n:apacheds-i18n 2.0.0-M15
org.apache.directory.server.kerberos.codec:apacheds-kerberos-codec 2.0.0-M15
org.apache.geronimo.specs:geronimo-annotation_1.0_spec 1.0
org.apache.hadoop.zookeeper:zookeeper 3.4.6
org.apache.hadoop:hadoop-annotations 2.7.2
org.apache.hadoop:hadoop-auth 2.7.2
org.apache.hadoop:hadoop-client 2.7.2
org.apache.hadoop:hadoop-common 2.7.2
org.apache.hadoop:hadoop-hdfs 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-app 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-common 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-core 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-hs 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-jobclient 2.7.2
org.apache.hadoop:hadoop-mapreduce-client-shuffle 2.7.2
org.apache.hadoop:hadoop-minicluster 2.7.2
org.apache.hadoop:hadoop-yarn-api 2.7.2
org.apache.hadoop:hadoop-yarn-client 2.7.2
org.apache.hadoop:hadoop-yarn-common 2.7.2
org.apache.hadoop:hadoop-yarn-server-applicationhistoryservice 2.7.2
org.apache.hadoop:hadoop-yarn-server-common 2.7.2
org.apache.hadoop:hadoop-yarn-server-nodemanager 2.7.2
org.apache.hadoop:hadoop-yarn-server-resourcemanager 2.7.2
org.apache.hadoop:hadoop-yarn-server-tests 2.7.2
org.apache.hadoop:hadoop-yarn-server-web-proxy 2.7.2
org.apache.htrace:htrace-core 3.1.0-incubating
org.apache.httpcomponents:httpclient 4.0.1
org.apache.httpcomponents:httpclient 4.1.1
org.apache.httpcomponents:httpclient 4.3.6
org.apache.httpcomponents:httpcore 4.0.1
org.apache.httpcomponents:httpcore 4.1
org.apache.httpcomponents:httpcore 4.3.3
org.apache.httpcomponents:httpcore 4.4.4
org.apache.ivy:ivy 2.2.0
org.apache.ivy:ivy 2.4.0
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.5
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.maven.wagon:wagon-file 2.4
org.apache.maven.wagon:wagon-http-shared4 2.4
org.apache.maven.wagon:wagon-http 2.4
org.apache.maven.wagon:wagon-provider-api 2.4
org.apache.maven:maven-aether-provider 3.0.4
org.apache.maven:maven-artifact 3.0.4
org.apache.maven:maven-compat 3.0.4
org.apache.maven:maven-core 3.0.4
org.apache.maven:maven-model-builder 3.0.4
org.apache.maven:maven-model 3.0.4
org.apache.maven:maven-plugin-api 3.0.4
org.apache.maven:maven-repository-metadata 3.0.4
org.apache.maven:maven-settings-builder 3.0.4
org.apache.maven:maven-settings 3.0.4
org.apache.mesos:mesos 0.21.1
org.apache.oro:oro 2.0.8
org.apache.parquet:parquet-avro 1.8.1
org.apache.parquet:parquet-column 1.8.2
org.apache.parquet:parquet-common 1.8.2
org.apache.parquet:parquet-encoding 1.8.2
org.apache.parquet:parquet-format 2.3.0-incubating
org.apache.parquet:parquet-hadoop 1.8.1
org.apache.parquet:parquet-jackson 1.8.1
org.apache.parquet:parquet-scala_2.10 1.8.2
org.apache.spark:spark-catalyst_2.11 2.0.2
org.apache.spark:spark-core_2.11 2.0.2
org.apache.spark:spark-graphx_2.11 2.0.2
org.apache.spark:spark-launcher_2.11 2.0.2
org.apache.spark:spark-mllib-local_2.11 2.0.2
org.apache.spark:spark-mllib_2.11 2.0.2
org.apache.spark:spark-network-common_2.11 2.0.2
org.apache.spark:spark-network-shuffle_2.11 2.0.2
org.apache.spark:spark-sketch_2.11 2.0.2
org.apache.spark:spark-sql_2.11 2.0.2
org.apache.spark:spark-streaming_2.11 2.0.2
org.apache.spark:spark-tags_2.11 2.0.2
org.apache.spark:spark-unsafe_2.11 2.0.2
org.apache.tools.ant.launch.Launcher:ant-launcher 1.9.4
org.apache.tools.ant.launch.Launcher:ant-launcher 1.9.6
org.apache.tools.ant:ant 1.9.4
org.apache.tools.ant:ant 1.9.6
org.apache.xbean:xbean-asm-util 4.4
org.apache.xbean:xbean-asm5-shaded 4.4
org.apache.xbean:xbean-reflect 3.4
org.apache.xerces.impl.Version:xercesImpl 2.9.1
org.apache.xmlcommons.Version:xml-apis 1.3.04
org.apache.zookeeper:zookeeper 3.4.6-tests
org.apache:commons-beanutils-core 1.8.0
org.apache:commons-httpclient 3.1
org.apache:jsp-api 2.1
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.23.0
org.bdgenomics.adam:adam-core-spark2_2.11 0.23.0
org.bdgenomics.bdg-formats:bdg-formats 0.11.3
org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.13
org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.13
org.bdgenomics.utils:utils-io-spark2_2.11 0.2.13
org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.13
org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.13
org.bouncycastle.bcpg:bcpg-jdk15on 1.51
org.bouncycastle.bcprovider:bcprov-jdk15on 1.51
org.broadinstitute.gatk.engine.CommandLineGATK:GenomeAnalysisTK_3.8 1-1-gdde23f56a6
org.broadinstitute.gatk:gatk-engine 3.9-SNAPSHOT
org.broadinstitute.gatk:gatk-package-distribution 3.9-SNAPSHOT
org.broadinstitute.gatk:gatk-tools-protected 3.9-SNAPSHOT
org.broadinstitute.gatk:gatk-tools-public 3.9-SNAPSHOT
org.broadinstitute.gatk:gatk-utils 3.9-SNAPSHOT
org.broadinstitute.hellbender.Main:gatk-package 4.beta.6-169-g1efafd2-SNAPSHOT-local
org.broadinstitute.hellbender.Main:gatk-package 4.beta.6-169-g1efafd2-SNAPSHOT-spark
org.broadinstitute.hellbender.Main:gatk 4.beta.6-169-g1efafd2-SNAPSHOT
org.bytedeco:javacpp 1.2.3
org.codehaus.janino.commons-compiler:commons-compiler 2.7.8
org.codehaus.jettison:jettison 1.1
org.codehaus.plexus:plexus-classworlds 2.4
org.codehaus.plexus:plexus-component-annotations 1.5.5
org.codehaus.plexus:plexus-container-default 1.5.5
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-interpolation 1.14
org.codehaus.plexus:plexus-utils 1.5.6
org.codehaus.plexus:plexus-utils 2.0.6
org.cohehaus.janino:janino 2.7.8
org.debian.security.UpdateCertificates:ca-certificates-java *
org.dom4j:dom4j 1.6.1
org.eclipse.jdt.core:core 3.1.1
org.eclipse.jdt:org.eclipse.jdt.annotation 1.1.0
org.eclipse.jetty:jetty-continuation 9.2.16.v20160414
org.eclipse.jetty:jetty-http 9.2.16.v20160414
org.eclipse.jetty:jetty-io 9.2.16.v20160414
org.eclipse.jetty:jetty-plus 9.2.16.v20160414
org.eclipse.jetty:jetty-security 9.2.16.v20160414
org.eclipse.jetty:jetty-server 9.2.16.v20160414
org.eclipse.jetty:jetty-servlet 9.2.16.v20160414
org.eclipse.jetty:jetty-servlets 9.2.16.v20160414
org.eclipse.jetty:jetty-util 9.2.16.v20160414
org.eclipse.jgit:org.eclipse.jgit 4.1.1.201511131810-r
org.freemarker.freemarker:freemarker 2.3.23
org.fusesource.hawtjni:hawtjni-runtime 1.9
org.fusesource.jansi:jansi-linux32 1.6
org.fusesource.jansi:jansi-linux64 1.6
org.fusesource.jansi:jansi-native 1.6
org.fusesource.jansi:jansi-osx 1.6
org.fusesource.jansi:jansi-windows32 1.6
org.fusesource.jansi:jansi-windows64 1.6
org.fusesource.jansi:jansi 1.13
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
org.glassfish.hk2.external:javax.inject 2.4.0-b34
org.glassfish.hk2:hk2-api 2.4.0-b34
org.glassfish.hk2:hk2-locator 2.4.0-b34
org.glassfish.hk2:hk2-utils 2.4.0-b34
org.glassfish.hk2:osgi-resource-locator 1.0.1
org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
org.glassfish.jersey.core:jersey-client 2.22.2
org.glassfish.jersey.core:jersey-common 2.22.2
org.glassfish.jersey.core:jersey-server 2.22.2
org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
org.glassfish:javax.annotation-api 1.2
org.glassfish:javax.servlet-api 3.1.0
org.gradle.launcher.GradleMain:gradle-launcher 3.1
org.hamcrest:hamcrest-core 1.1
org.hammerlab:args4s_2.11 1.0.0
org.hammerlab:genomic-loci_2.11 1.4.4
org.hammerlab:iterator_2.11 1.0.0
org.hammerlab:string-utils_2.11 1.0.0
org.javassist:javassist 3.16.1-GA
org.javassist:javassist 3.18.2-GA
org.jaxen:jaxen 1.1
org.jctools:jctools-core 2.0.2
org.jdom2.filter:jdom2 2.0.5
org.jetbrains.kotlin:kotlin-compiler-embeddable 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-runtime 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-stdlib 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-test-junit 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-test 1.1.0-dev-2053
org.jgrapht:jgrapht-core 0.9.1
org.joda:joda-time 2.8.2
org.joda:joda-time 2.9.2
org.jpmml:pmml-model 1.2.15
org.jpmml:pmml-schema 1.2.15
org.json:json 20160810
org.json4s:json4s-ast_2.11 3.2.11
org.json4s:json4s-core_2.11 3.2.11
org.json4s:json4s-jackson_2.11 3.2.11
org.jvnet:tiger-types 1.4
org.kohsuke.args4j:args4j 2.33
org.mockito.mockito-core:mockito-core 2.10.0
org.mortbay.jetty:jetty-annotations 6.1.25
org.mortbay.jetty:jetty-naming 6.1.25
org.mortbay.jetty:jetty-plus 6.1.25
org.mortbay.jetty:jetty-util 6.1.25
org.mortbay.jetty:jetty-util 6.1.26
org.mortbay.jetty:jetty 6.1.25
org.mortbay.jetty:jetty 6.1.26
org.mortbay.jetty:jsp-2.1 6.1.14
org.mortbay.jetty:jsp-api-2.1 6.1.14
org.mortbay.jetty:servlet-api 2.5-20081211
org.mozilla.javascript.tools.shell.Main:rhino 1.7R3
org.nd4j:nd4j-api 0.5.0
org.nd4j:nd4j-buffer 0.5.0
org.nd4j:nd4j-common 0.5.0
org.nd4j:nd4j-context 0.5.0
org.nd4j:nd4j-kryo_2.11 0.5.0
org.nd4j:nd4j-native-api 0.5.0
org.nd4j:nd4j-native-platform 0.5.0
org.nd4j:nd4j-native 0.5.0
org.objectweb.asm.all:asm-all 5.1
org.objectweb.asm.commons:asm-commons 5.0.3
org.objectweb.asm.tree:asm-tree 5.0.3
org.objectweb.asm:asm 4.2
org.objectweb.asm:asm 5.0.3
org.objenesis:objenesis 1.2
org.objenesis:objenesis 2.1
org.objenesis:objenesis 2.6
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.reflections:reflections 0.9.10
org.reflections:reflections 0.9.9-RC1
org.roaringbitmap:RoaringBitmap 0.5.11
org.scala-lang.modules.scala-parser-combinators:scala-parser-combinators_2.11 1.0.1
org.scala-lang.modules.scala-xml:scala-xml_2.11 1.0.2
org.scala-lang.scala-compiler:scala-compiler 2.11.0
org.scala-lang.scala-library:scala-library 2.11.8
org.scala-lang.scala-reflect:scala-reflect 2.11.8
org.scalanlp:breeze-macros_2.11 0.11.2
org.scalanlp:breeze_2.11 0.11.2
org.scalatest:scalatest_2.11 2.2.6
org.seqdoop:hadoop-bam 7.9.1
org.simpleframework:simple-xml 2.0.4
org.simpleframework:simple 4.1.21
org.slf4j:jcl-over-slf4j 1.7.10
org.slf4j:jcl-over-slf4j 1.7.16
org.slf4j:jul-to-slf4j 1.7.10
org.slf4j:log4j-over-slf4j 1.7.10
org.slf4j:slf4j-api 1.6.1
org.slf4j:slf4j-api 1.7.10
org.slf4j:slf4j-api 1.7.2
org.slf4j:slf4j-api 1.7.25
org.slf4j:slf4j-log4j12 1.7.21
org.slf4j:slf4j-log4j12 1.7.5
org.sonatype.aether:aether-api 1.13.1
org.sonatype.aether:aether-connector-wagon 1.13.1
org.sonatype.aether:aether-impl 1.13.1
org.sonatype.aether:aether-spi 1.13.1
org.sonatype.aether:aether-util 1.13.1
org.sonatype.oss:drmaa-common 1.0
org.sonatype.oss:drmaa-gridengine 6.2u5
org.sonatype.oss:kryo-serializers 0.41
org.sonatype.plexus:plexus-cipher 1.7
org.sonatype.plexus:plexus-sec-dispatcher 1.3
org.sonatype.pmaven:pmaven-common 0.8-SNAPSHOT
org.sonatype.pmaven:pmaven-groovy 0.8-SNAPSHOT
org.spark-project.spark:unused 1.0.0
org.spire-math:spire-macros_2.11 0.11.0
org.spire-math:spire_2.11 0.11.0
org.testng:testng 6.11
org.testng:testng 6.3.1
org.threeten:threetenbp 1.3.3
org.tukaani.xz:xz 1.5
org.typelevel:machinist_2.11 0.4.1
org.w3c.dom.ls:xercesImpl 2.9.1
org.xerial.snappy.snappy-java:snappy-java 1.1.4
org.xerial.snappy:snappy-java 1.0.3-rc3
org.xerial:sqlite-jdbc 3.20.1
org.xml.sax:xercesImpl 2.9.1
org.xml.sax:xml-apis 1.3.04
org.yaml:snakeyaml 1.17
org.yaml:snakeyaml 1.6
picard:picard 2.17.2
picard:picard 2.17.2-sources
proto-google-common-protos:proto-google-common-protos 0.1.13
proto-google-iam-v1:proto-google-iam-v1 0.1.13
regexp:regexp 1.3
resources:resources 1.8.0_131
rt:rt 1.8.0_131
sa-jdi:sa-jdi *
scalap:scalap 2.11.0
shadow:shadow 1.2.3
stax-api:stax-api 1.0-2
tools:tools *
validation-api:validation-api 1.1.0.Final
xmlenc:xmlenc 0.52
xmlpull:xmlpull 1.1.3.1
xpp3_min:xpp3_min 1.1.4c
zipfs:zipfs 1.8.0_131

java 1.8.0_131-8u131-b11-2ubuntu1.16.04.3-b11
python 2.7.12
python 3.5.2
python 3.6.2
python 3.6.3

python-dateutil 2.6.1
Keras 2.1.1
Markdown 2.6.9
PyGObject 3.20.0
PySocks 1.6.7
PyYAML 3.12
SocksiPy-branch 1.01
Theano 0.9.0
Werkzeug 0.12.2
argparse 1.2.1
asn1crypto 0.22.0
bleach 1.5.0
boto 2.48.0
certifi 2016.2.28
certifi 2017.07.27.1
cffi 1.10.0
chardet 3.0.4
conda 4.3.30
coverage 3.7.1
cryptography 2.0.3
cycler 0.10.0
enum34 1.1.6
gatkpythonpackages 0.1
h5py 2.7.1
html5lib 0.9999999
idna 2.6
joblib 0.11
matplotlib 2.1.0
mock 1.0.1
mock 2.0.0
nose 1.3.3
numpy 1.13.3
oauth2client 1.2
oauth2client 2.2.0
ordereddict 1.1
pandas 0.21.0
patsy 0.4.1
pip 8.1.1
pip 9.0.1
protobuf 3.5.0.post1
pyOpenSSL 17.2.0
pycosat 0.6.2
pycparser 2.18
pycurl 7.43.0
pymc3 3.1
pyparsing 2.2.0
python-apt 1.1.0.b1
pytz 2017.3
requests 2.18.4
rsa 3.1.4
ruamel_yaml 0.11.14
scipy 1.0.0
scour 0.32
setuptools 20.7.0
setuptools 36.4.0
setuptools 36.5.0.post20170921
simplejson 3.5.2
simplejson 3.6.5
six 1.10.0
six 1.11.0
tensorflow-tensorboard 0.4.0rc3
tensorflow 1.4.0
tqdm 4.19.4
unattended-upgrades 0.1
unittest2 0.5.1
urllib3 1.22
wheel 0.29.0
wsgiref 0.1.2

ecosyste.ms

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Docker

broadinstitute/gatk-test : 4.0-prerelease-1efafd2b5

Dependencies