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giusmar/rnaseq : 0.2

Ubuntu 22.10

Latest release: over 1 year ago - 14 downloads - 1,154 dependencies

JSON

Dependencies

ubuntu/adduser 3.121ubuntu1
ubuntu/adwaita-icon-theme 41.0-1ubuntu1
ubuntu/alsa-topology-conf 1.2.5.1-2
ubuntu/alsa-ucm-conf 1.2.6.3-1ubuntu4.2
ubuntu/apt-utils 2.5.3
ubuntu/apt 2.5.3
ubuntu/at-spi2-common 2.46.0-3
ubuntu/at-spi2-core 2.46.0-3
ubuntu/base-files 12.2ubuntu3
ubuntu/base-passwd 3.6.0
ubuntu/bash 5.2-1ubuntu2
ubuntu/bsdutils 1:2.38-4ubuntu1
ubuntu/bwa 0.7.17-7
ubuntu/ca-certificates-java 20220719ubuntu0.1
ubuntu/ca-certificates 20211016ubuntu0.22.10.1
ubuntu/coreutils 8.32-4.1ubuntu1
ubuntu/curl 7.85.0-1ubuntu0.5
ubuntu/dash 0.5.11 git20210903 057cd650a4ed-8ubuntu1
ubuntu/dbus-bin 1.14.0-2ubuntu3
ubuntu/dbus-daemon 1.14.0-2ubuntu3
ubuntu/dbus-session-bus-common 1.14.0-2ubuntu3
ubuntu/dbus-system-bus-common 1.14.0-2ubuntu3
ubuntu/dbus-user-session 1.14.0-2ubuntu3
ubuntu/dbus 1.14.0-2ubuntu3
ubuntu/dconf-gsettings-backend 0.40.0-3
ubuntu/dconf-service 0.40.0-3
ubuntu/debconf 1.5.79ubuntu1
ubuntu/debianutils 5.7-0.3
ubuntu/default-jdk-headless 2:1.11-72build2
ubuntu/default-jdk 2:1.11-72build2
ubuntu/default-jre-headless 2:1.11-72build2
ubuntu/default-jre 2:1.11-72build2
ubuntu/diffutils 1:3.8-1
ubuntu/dirmngr 2.2.35-3ubuntu1
ubuntu/distro-info-data 0.54ubuntu0.3
ubuntu/dmsetup 2:1.02.185-1ubuntu1
ubuntu/dpkg 1.21.9ubuntu1
ubuntu/e2fsprogs 1.46.5-2ubuntu2
ubuntu/findutils 4.9.0-3ubuntu1
ubuntu/fontconfig-config 2.13.1-4.4ubuntu1
ubuntu/fontconfig 2.13.1-4.4ubuntu1
ubuntu/fonts-dejavu-core 2.37-2build1
ubuntu/fonts-dejavu-extra 2.37-2build1
ubuntu/gcc-12-base 12.2.0-3ubuntu1
ubuntu/gir1.2-glib-2.0 1.74.0-2
ubuntu/gir1.2-packagekitglib-1.0 1.2.5-2ubuntu2
ubuntu/git-lfs 3.2.0-1ubuntu0.22.10.1
ubuntu/git-man 1:2.37.2-1ubuntu1.5
ubuntu/git 1:2.37.2-1ubuntu1.5
ubuntu/gnupg-l10n 2.2.35-3ubuntu1
ubuntu/gnupg-utils 2.2.35-3ubuntu1
ubuntu/gnupg 2.2.35-3ubuntu1
ubuntu/gpg-agent 2.2.35-3ubuntu1
ubuntu/gpg-wks-client 2.2.35-3ubuntu1
ubuntu/gpg-wks-server 2.2.35-3ubuntu1
ubuntu/gpg 2.2.35-3ubuntu1
ubuntu/gpgconf 2.2.35-3ubuntu1
ubuntu/gpgsm 2.2.35-3ubuntu1
ubuntu/gpgv 2.2.35-3ubuntu1
ubuntu/grep 3.7-1build1
ubuntu/gsettings-desktop-schemas 43.0-1ubuntu1
ubuntu/gtk-update-icon-cache 3.24.34-3ubuntu2
ubuntu/gzip 1.12-1ubuntu1
ubuntu/hicolor-icon-theme 0.17-2
ubuntu/hostname 3.23ubuntu2
ubuntu/humanity-icon-theme 0.6.16
ubuntu/init-system-helpers 1.64
ubuntu/iso-codes 4.11.0-1
ubuntu/java-common 0.72build2
ubuntu/krb5-locales 1.20-1ubuntu0.1
ubuntu/less 590-1ubuntu0.22.10.1
ubuntu/libacl1 2.3.1-1
ubuntu/libapparmor1 3.0.7-1ubuntu2
ubuntu/libappstream4 0.15.5-1
ubuntu/libapt-pkg6.0 2.5.3
ubuntu/libargon2-1 0~20171227-0.3
ubuntu/libasound2-data 1.2.7.2-1
ubuntu/libasound2 1.2.7.2-1
ubuntu/libassuan0 2.5.5-4
ubuntu/libatk-bridge2.0-0 2.46.0-3
ubuntu/libatk-wrapper-java-jni 0.40.0-2
ubuntu/libatk-wrapper-java 0.40.0-2
ubuntu/libatk1.0-0 2.46.0-3
ubuntu/libatspi2.0-0 2.46.0-3
ubuntu/libattr1 1:2.5.1-1build1
ubuntu/libaudit-common 1:3.0.7-1ubuntu1
ubuntu/libaudit1 1:3.0.7-1ubuntu1
ubuntu/libavahi-client3 0.8-6ubuntu1
ubuntu/libavahi-common-data 0.8-6ubuntu1
ubuntu/libavahi-common3 0.8-6ubuntu1
ubuntu/libblkid1 2.38-4ubuntu1
ubuntu/libbrotli1 1.0.9-2build6
ubuntu/libbsd0 0.11.6-1
ubuntu/libbz2-1.0 1.0.8-5build1
ubuntu/libc-bin 2.36-0ubuntu4
ubuntu/libc6 2.36-0ubuntu4
ubuntu/libcairo-gobject2 1.16.0-5ubuntu2
ubuntu/libcairo2 1.16.0-5ubuntu2
ubuntu/libcap-ng0 0.8.3-1
ubuntu/libcap2-bin 1:2.44-1build3
ubuntu/libcap2 1:2.44-1build3
ubuntu/libcbor0.8 0.8.0-2ubuntu1
ubuntu/libcom-err2 1.46.5-2ubuntu2
ubuntu/libcrypt1 1:4.4.28-2
ubuntu/libcryptsetup12 2:2.5.0-2ubuntu1
ubuntu/libcups2 2.4.2-1ubuntu2
ubuntu/libcurl3-gnutls 7.85.0-1ubuntu0.5
ubuntu/libcurl4 7.85.0-1ubuntu0.5
ubuntu/libdatrie1 0.2.13-2
ubuntu/libdb5.3 5.3.28 dfsg1-0.10
ubuntu/libdbus-1-3 1.14.0-2ubuntu3
ubuntu/libdconf1 0.40.0-3
ubuntu/libdebconfclient0 0.264ubuntu1
ubuntu/libdeflate0 1.12-1
ubuntu/libdevmapper1.02.1 2:1.02.185-1ubuntu1
ubuntu/libdrm-amdgpu1 2.4.113-2
ubuntu/libdrm-common 2.4.113-2
ubuntu/libdrm-intel1 2.4.113-2
ubuntu/libdrm-nouveau2 2.4.113-2
ubuntu/libdrm-radeon1 2.4.113-2
ubuntu/libdrm2 2.4.113-2
ubuntu/libdw1 0.187-4
ubuntu/libedit2 3.1-20210910-1build1
ubuntu/libelf1 0.187-4
ubuntu/liberror-perl 0.17029-1
ubuntu/libexpat1 2.4.8-2ubuntu0.22.10.1
ubuntu/libext2fs2 1.46.5-2ubuntu2
ubuntu/libfdisk1 2.38-4ubuntu1
ubuntu/libffi8 3.4.2-4
ubuntu/libfido2-1 1.11.0-1
ubuntu/libfontconfig1 2.13.1-4.4ubuntu1
ubuntu/libfontenc1 1:1.1.4-1build3
ubuntu/libfreetype6 2.12.1 dfsg-3ubuntu0.1
ubuntu/libfribidi0 1.0.8-2.1ubuntu1
ubuntu/libgail-common 2.24.33-2ubuntu2
ubuntu/libgail18 2.24.33-2ubuntu2
ubuntu/libgcc-s1 12.2.0-3ubuntu1
ubuntu/libgcrypt20 1.10.1-2ubuntu1
ubuntu/libgdbm-compat4 1.23-1
ubuntu/libgdbm6 1.23-1
ubuntu/libgdk-pixbuf-2.0-0 2.42.9 dfsg-1ubuntu1
ubuntu/libgdk-pixbuf2.0-bin 2.42.9 dfsg-1ubuntu1
ubuntu/libgdk-pixbuf2.0-common 2.42.9 dfsg-1ubuntu1
ubuntu/libgif7 5.2.1-2.5
ubuntu/libgirepository-1.0-1 1.74.0-2
ubuntu/libgl1-amber-dri 21.3.7-0ubuntu1
ubuntu/libgl1-mesa-dri 22.2.5-0ubuntu0.1
ubuntu/libgl1 1.5.0-1
ubuntu/libglapi-mesa 22.2.5-0ubuntu0.1
ubuntu/libglib2.0-0 2.74.3-0ubuntu1
ubuntu/libglib2.0-bin 2.74.3-0ubuntu1
ubuntu/libglib2.0-data 2.74.3-0ubuntu1
ubuntu/libglvnd0 1.5.0-1
ubuntu/libglx-mesa0 22.2.5-0ubuntu0.1
ubuntu/libglx0 1.5.0-1
ubuntu/libgmp10 2:6.2.1 dfsg1-1ubuntu2
ubuntu/libgnutls30 3.7.7-2ubuntu2.1
ubuntu/libgpg-error0 1.45-2
ubuntu/libgraphite2-3 1.3.14-1build2
ubuntu/libgssapi-krb5-2 1.20-1ubuntu0.1
ubuntu/libgstreamer1.0-0 1.20.3-1
ubuntu/libgtk2.0-0 2.24.33-2ubuntu2
ubuntu/libgtk2.0-bin 2.24.33-2ubuntu2
ubuntu/libgtk2.0-common 2.24.33-2ubuntu2
ubuntu/libharfbuzz0b 2.7.4-1ubuntu5
ubuntu/libhogweed6 3.8.1-2
ubuntu/libice-dev 2:1.0.10-1build2
ubuntu/libice6 2:1.0.10-1build2
ubuntu/libicu71 71.1-3ubuntu1
ubuntu/libidn2-0 2.3.3-1
ubuntu/libip4tc2 1.8.7-1ubuntu6
ubuntu/libjbig0 2.1-3.1ubuntu0.22.10.1
ubuntu/libjpeg-turbo8 2.1.2-0ubuntu1
ubuntu/libjpeg8 8c-2ubuntu10
ubuntu/libjson-c5 0.16-1
ubuntu/libk5crypto3 1.20-1ubuntu0.1
ubuntu/libkeyutils1 1.6.3-1
ubuntu/libkmod2 30 20220630-3ubuntu1
ubuntu/libkrb5-3 1.20-1ubuntu0.1
ubuntu/libkrb5support0 1.20-1ubuntu0.1
ubuntu/libksba8 1.6.0-3ubuntu1.1
ubuntu/liblcms2-2 2.13.1-1
ubuntu/libldap-2.5-0 2.5.14 dfsg-0ubuntu0.22.10.2
ubuntu/libldap-common 2.5.14 dfsg-0ubuntu0.22.10.2
ubuntu/liblerc3 3.0 ds-1ubuntu1
ubuntu/libllvm15 1:15.0.7-0ubuntu0.22.10.1
ubuntu/liblz4-1 1.9.3-2build2
ubuntu/liblzma5 5.2.5-2.1
ubuntu/libmd0 1.0.4-2
ubuntu/libmount1 2.38-4ubuntu1
ubuntu/libmpdec3 2.5.1-2build2
ubuntu/libncurses6 6.3 20220423-2
ubuntu/libncursesw6 6.3 20220423-2
ubuntu/libnettle8 3.8.1-2
ubuntu/libnghttp2-14 1.49.0-1
ubuntu/libnpth0 1.6-3build2
ubuntu/libnsl2 1.3.0-2build2
ubuntu/libnspr4 2:4.34.1-1
ubuntu/libnss-systemd 251.4-1ubuntu7.3
ubuntu/libnss3 2:3.82-1ubuntu0.1
ubuntu/libp11-kit0 0.24.1-1ubuntu2
ubuntu/libpackagekit-glib2-18 1.2.5-2ubuntu2
ubuntu/libpam-cap 1:2.44-1build3
ubuntu/libpam-modules-bin 1.5.2-2ubuntu1.3
ubuntu/libpam-modules 1.5.2-2ubuntu1.3
ubuntu/libpam-runtime 1.5.2-2ubuntu1.3
ubuntu/libpam-systemd 251.4-1ubuntu7.3
ubuntu/libpam0g 1.5.2-2ubuntu1.3
ubuntu/libpango-1.0-0 1.50.10 ds-1
ubuntu/libpangocairo-1.0-0 1.50.10 ds-1
ubuntu/libpangoft2-1.0-0 1.50.10 ds-1
ubuntu/libpciaccess0 0.16-3
ubuntu/libpcre2-8-0 10.40-1ubuntu1
ubuntu/libpcre3 2:8.39-14
ubuntu/libpcsclite1 1.9.9-1
ubuntu/libperl5.34 5.34.0-5ubuntu1.1
ubuntu/libpixman-1-0 0.40.0-1ubuntu0.22.10.1
ubuntu/libpng16-16 1.6.38-2
ubuntu/libpolkit-agent-1-0 0.105-33
ubuntu/libpolkit-gobject-1-0 0.105-33
ubuntu/libprocps8 2:3.3.17-7ubuntu1
ubuntu/libpsl5 0.21.0-1.2build2
ubuntu/libpthread-stubs0-dev 0.4-1build2
ubuntu/libpython3-stdlib 3.10.6-1
ubuntu/libpython3.10-minimal 3.10.7-1ubuntu0.3
ubuntu/libpython3.10-stdlib 3.10.7-1ubuntu0.3
ubuntu/libreadline8 8.2-1
ubuntu/librsvg2-2 2.54.4 dfsg-1ubuntu1
ubuntu/librsvg2-common 2.54.4 dfsg-1ubuntu1
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build4
ubuntu/libsasl2-2 2.1.28 dfsg-6ubuntu2
ubuntu/libsasl2-modules-db 2.1.28 dfsg-6ubuntu2
ubuntu/libsasl2-modules 2.1.28 dfsg-6ubuntu2
ubuntu/libseccomp2 2.5.4-1ubuntu1
ubuntu/libselinux1 3.4-1
ubuntu/libsemanage-common 3.4-1
ubuntu/libsemanage2 3.4-1
ubuntu/libsensors-config 1:3.6.0-7ubuntu1
ubuntu/libsensors5 1:3.6.0-7ubuntu1
ubuntu/libsepol2 3.4-2
ubuntu/libsm-dev 2:1.2.3-1build2
ubuntu/libsm6 2:1.2.3-1build2
ubuntu/libsmartcols1 2.38-4ubuntu1
ubuntu/libsqlite3-0 3.39.3-1
ubuntu/libss2 1.46.5-2ubuntu2
ubuntu/libssh-4 0.9.6-2build1
ubuntu/libssl3 3.0.5-2ubuntu2.2
ubuntu/libstdc 6 12.2.0-3ubuntu1
ubuntu/libstemmer0d 2.2.0-1build1
ubuntu/libsystemd-shared 251.4-1ubuntu7.3
ubuntu/libsystemd0 251.4-1ubuntu7.3
ubuntu/libtasn1-6 4.18.0-4build1
ubuntu/libthai-data 0.1.29-1build1
ubuntu/libthai0 0.1.29-1build1
ubuntu/libtiff5 4.4.0-4ubuntu3.3
ubuntu/libtinfo6 6.3 20220423-2
ubuntu/libtirpc-common 1.3.3 ds-1
ubuntu/libtirpc3 1.3.3 ds-1
ubuntu/libudev1 251.4-1ubuntu7.3
ubuntu/libunistring2 1.0-1
ubuntu/libunwind8 1.6.2-0ubuntu1.1
ubuntu/libuuid1 2.38-4ubuntu1
ubuntu/libwebp7 1.2.2-2ubuntu0.22.10.1
ubuntu/libx11-6 2:1.8.1-2
ubuntu/libx11-data 2:1.8.1-2
ubuntu/libx11-dev 2:1.8.1-2
ubuntu/libx11-xcb1 2:1.8.1-2
ubuntu/libxau-dev 1:1.0.9-1build5
ubuntu/libxau6 1:1.0.9-1build5
ubuntu/libxaw7 2:1.0.14-1
ubuntu/libxcb-dri2-0 1.15-1
ubuntu/libxcb-dri3-0 1.15-1
ubuntu/libxcb-glx0 1.15-1
ubuntu/libxcb-present0 1.15-1
ubuntu/libxcb-render0 1.15-1
ubuntu/libxcb-shape0 1.15-1
ubuntu/libxcb-shm0 1.15-1
ubuntu/libxcb-sync1 1.15-1
ubuntu/libxcb-xfixes0 1.15-1
ubuntu/libxcb1-dev 1.15-1
ubuntu/libxcb1 1.15-1
ubuntu/libxcomposite1 1:0.4.5-1build2
ubuntu/libxcursor1 1:1.2.1-1
ubuntu/libxdamage1 1:1.1.5-2build2
ubuntu/libxdmcp-dev 1:1.1.3-0ubuntu5
ubuntu/libxdmcp6 1:1.1.3-0ubuntu5
ubuntu/libxext6 2:1.3.4-1build1
ubuntu/libxfixes3 1:6.0.0-1
ubuntu/libxft2 2.3.4-1
ubuntu/libxi6 2:1.8-1build1
ubuntu/libxinerama1 2:1.1.4-3
ubuntu/libxkbfile1 1:1.1.0-1build3
ubuntu/libxml2 2.9.14 dfsg-1ubuntu0.2
ubuntu/libxmlb2 0.3.8-1
ubuntu/libxmu6 2:1.1.3-3
ubuntu/libxmuu1 2:1.1.3-3
ubuntu/libxpm4 1:3.5.12-1ubuntu0.22.10.1
ubuntu/libxrandr2 2:1.5.2-2
ubuntu/libxrender1 1:0.9.10-1.1
ubuntu/libxshmfence1 1.3-1build4
ubuntu/libxt-dev 1:1.2.1-1
ubuntu/libxt6 1:1.2.1-1
ubuntu/libxtst6 2:1.2.3-1.1
ubuntu/libxv1 2:1.0.11-1.1
ubuntu/libxxf86dga1 2:1.1.5-0ubuntu3
ubuntu/libxxf86vm1 1:1.1.4-1build3
ubuntu/libxxhash0 0.8.1-1
ubuntu/libyaml-0-2 0.2.5-1
ubuntu/libzstd1 1.5.2 dfsg-1
ubuntu/login 1:4.11.1 dfsg1-2ubuntu1.1
ubuntu/logsave 1.46.5-2ubuntu2
ubuntu/lsb-base 11.2ubuntu1
ubuntu/lsb-release 11.2ubuntu1
ubuntu/make 4.3-4.1build1
ubuntu/mawk 1.3.4.20200120-3.1
ubuntu/media-types 8.0.0
ubuntu/mount 2.38-4ubuntu1
ubuntu/ncurses-base 6.3 20220423-2
ubuntu/ncurses-bin 6.3 20220423-2
ubuntu/netbase 6.3
ubuntu/networkd-dispatcher 2.1-2ubuntu1
ubuntu/openjdk-11-jdk-headless 11.0.19 7~us1-0ubuntu1~22.10.1
ubuntu/openjdk-11-jdk 11.0.19 7~us1-0ubuntu1~22.10.1
ubuntu/openjdk-11-jre-headless 11.0.19 7~us1-0ubuntu1~22.10.1
ubuntu/openjdk-11-jre 11.0.19 7~us1-0ubuntu1~22.10.1
ubuntu/openjdk-17-jdk-headless 17.0.7 7~us1-0ubuntu1~22.10.2
ubuntu/openjdk-17-jdk 17.0.7 7~us1-0ubuntu1~22.10.2
ubuntu/openjdk-17-jre-headless 17.0.7 7~us1-0ubuntu1~22.10.2
ubuntu/openjdk-17-jre 17.0.7 7~us1-0ubuntu1~22.10.2
ubuntu/openssh-client 1:9.0p1-1ubuntu7.1
ubuntu/openssl 3.0.5-2ubuntu2.2
ubuntu/packagekit-tools 1.2.5-2ubuntu2
ubuntu/packagekit 1.2.5-2ubuntu2
ubuntu/passwd 1:4.11.1 dfsg1-2ubuntu1.1
ubuntu/patch 2.7.6-7build2
ubuntu/perl-base 5.34.0-5ubuntu1.1
ubuntu/perl-modules-5.34 5.34.0-5ubuntu1.1
ubuntu/perl 5.34.0-5ubuntu1.1
ubuntu/pinentry-curses 1.2.0-2ubuntu1
ubuntu/pkexec 0.105-33
ubuntu/policykit-1 0.105-33
ubuntu/polkitd 0.105-33
ubuntu/procps 2:3.3.17-7ubuntu1
ubuntu/publicsuffix 20220811.1734-1
ubuntu/python-apt-common 2.4.0 22.10
ubuntu/python-is-python3 3.9.2-2
ubuntu/python3-apt 2.4.0 22.10
ubuntu/python3-blinker 1.4 dfsg1-0.5
ubuntu/python3-cffi-backend 1.15.1-1
ubuntu/python3-cryptography 3.4.8-2
ubuntu/python3-dbus 1.2.18-3build1
ubuntu/python3-distro-info 1.1ubuntu1
ubuntu/python3-distro 1.7.0-1
ubuntu/python3-gi 3.42.2-2
ubuntu/python3-httplib2 0.20.4-2
ubuntu/python3-importlib-metadata 4.6.4-1
ubuntu/python3-jeepney 0.8.0-1
ubuntu/python3-jwt 2.4.0-1
ubuntu/python3-keyring 23.8.2-1
ubuntu/python3-launchpadlib 1.10.16-1
ubuntu/python3-lazr.restfulclient 0.14.4-1
ubuntu/python3-lazr.uri 1.0.6-2
ubuntu/python3-minimal 3.10.6-1
ubuntu/python3-more-itertools 8.10.0-2
ubuntu/python3-oauthlib 3.2.0-1ubuntu1
ubuntu/python3-pkg-resources 59.6.0-1.2ubuntu0.22.10.1
ubuntu/python3-pyparsing 3.0.7-2
ubuntu/python3-secretstorage 3.3.3-1ubuntu1
ubuntu/python3-six 1.16.0-4
ubuntu/python3-software-properties 0.99.27
ubuntu/python3-wadllib 1.3.6-1
ubuntu/python3-zipp 1.0.0-4
ubuntu/python3.10-minimal 3.10.7-1ubuntu0.3
ubuntu/python3.10 3.10.7-1ubuntu0.3
ubuntu/python3 3.10.6-1
ubuntu/readline-common 8.2-1
ubuntu/sed 4.8-1ubuntu2
ubuntu/sensible-utils 0.0.17
ubuntu/session-migration 0.3.6
ubuntu/sgml-base 1.30
ubuntu/shared-mime-info 2.2-1
ubuntu/software-properties-common 0.99.27
ubuntu/systemd-resolved 251.4-1ubuntu7.3
ubuntu/systemd-sysv 251.4-1ubuntu7.3
ubuntu/systemd-timesyncd 251.4-1ubuntu7.3
ubuntu/systemd 251.4-1ubuntu7.3
ubuntu/sysvinit-utils 3.04-1ubuntu1
ubuntu/tar 1.34 dfsg-1ubuntu0.1.22.10.1
ubuntu/ubuntu-keyring 2021.03.26
ubuntu/ubuntu-mono 20.10-0ubuntu2
ubuntu/ucf 3.0043
ubuntu/unattended-upgrades 2.8ubuntu1
ubuntu/usrmerge 29ubuntu2
ubuntu/util-linux-extra 2.38-4ubuntu1
ubuntu/util-linux 2.38-4ubuntu1
ubuntu/wget 1.21.3-1ubuntu1
ubuntu/x11-common 1:7.7 23ubuntu2
ubuntu/x11-utils 7.7 5build2
ubuntu/x11proto-dev 2022.1-1
ubuntu/xauth 1:1.1.1-1
ubuntu/xdg-user-dirs 0.17-2ubuntu4
ubuntu/xorg-sgml-doctools 1:1.11-1.1
ubuntu/xtrans-dev 1.4.0-1
ubuntu/xz-utils 5.2.5-2.1
ubuntu/zlib1g 1:1.2.11.dfsg-4.1ubuntu1

com.sun.jersey:jersey-servlet 1.19
com.sun.jna:jna 5.10.0
12:12 2.3.3
RoaringBitmap:RoaringBitmap 0.9.25
annotations:annotations 2.0.1
aopalliance:aopalliance 1.0
args4j:args4j 2.33
arpack_combined_all:arpack_combined_all 0.1
barclay:barclay 5.0.0
bsh:bsh 2.0b6
com.amazonaws:aws-java-sdk-core 1.11.948
com.amazonaws:aws-java-sdk-kms 1.11.948
com.amazonaws:aws-java-sdk-s3 1.11.948
com.amazonaws:aws-java-sdk-sts 1.11.948
com.amazonaws:jmespath-java 1.11.948
com.clearspring.analytics:stream 2.9.6
com.esotericsoftware.kryo:kryo 2.24.0
com.esotericsoftware.minlog:minlog 1.2
com.esotericsoftware.reflectasm:reflectasm 1.09
com.esotericsoftware:kryo-shaded 4.0.2
com.esotericsoftware:kryo 4.0.0
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.11.3
com.fasterxml.jackson.core:jackson-annotations 2.11.4
com.fasterxml.jackson.core:jackson-annotations 2.13.0
com.fasterxml.jackson.core:jackson-annotations 2.13.3
com.fasterxml.jackson.core:jackson-annotations 2.4.0
com.fasterxml.jackson.core:jackson-core 2.11.4
com.fasterxml.jackson.core:jackson-core 2.13.0
com.fasterxml.jackson.core:jackson-core 2.13.3
com.fasterxml.jackson.core:jackson-core 2.4.0
com.fasterxml.jackson.core:jackson-databind 2.11.4
com.fasterxml.jackson.core:jackson-databind 2.13.0
com.fasterxml.jackson.core:jackson-databind 2.13.3
com.fasterxml.jackson.core:jackson-databind 2.4.0
com.fasterxml.jackson.jaxrs:jackson-jaxrs-base 2.13.0
com.fasterxml.jackson.jaxrs:jackson-jaxrs-base 2.13.3
com.google.cloud:google-cloud-core-http 2.5.6
com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider 2.13.0
com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider 2.13.3
com.fasterxml.jackson.module:12 2.13.3
com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.13.0
com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.13.3
com.fasterxml.woodstox:woodstox-core 5.3.0
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
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native-platform-freebsd-amd64-libcpp:native-platform-freebsd-amd64-libcpp 0.22-milestone-23
native-platform-linux-aarch64-ncurses5:native-platform-linux-aarch64-ncurses5 0.22-milestone-23
native-platform-linux-aarch64-ncurses6:native-platform-linux-aarch64-ncurses6 0.22-milestone-23
native-platform-linux-aarch64:native-platform-linux-aarch64 0.22-milestone-23
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native-platform-osx-amd64:native-platform-osx-amd64 0.22-milestone-23
native-platform-windows-amd64-min:native-platform-windows-amd64-min 0.22-milestone-23
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native-platform-windows-i386:native-platform-windows-i386 0.22-milestone-23
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net.grey-panther:natural-comparator 1.1
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net.minidev:accessors-smart 2.4.7
net.minidev:json-smart 1.3.2
net.minidev:json-smart 2.4.2
net.openhft:zero-allocation-hashing 0.9
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org.apache.httpcomponents:httpclient 4.3.6
org.apache.httpcomponents:httpclient 4.5.13
org.apache.httpcomponents:httpcore 4.3.3
org.apache.httpcomponents:httpcore 4.4.13
org.apache.httpcomponents:httpcore 4.4.14
org.apache.httpcomponents:httpcore 4.4.15
org.apache.kerby:kerb-admin 1.0.1
org.apache.kerby:kerb-client 1.0.1
org.apache.kerby:kerb-common 1.0.1
org.apache.kerby:kerb-core 1.0.1
org.apache.kerby:kerb-crypto 1.0.1
org.apache.kerby:kerb-identity 1.0.1
org.apache.kerby:kerb-server 1.0.1
org.apache.kerby:kerb-simplekdc 1.0.1
org.apache.kerby:kerb-util 1.0.1
org.apache.kerby:kerby-asn1 1.0.1
org.apache.kerby:kerby-config 1.0.1
org.apache.kerby:kerby-pkix 1.0.1
org.apache.kerby:kerby-util 1.0.1
org.apache.kerby:kerby-xdr 1.0.1
org.apache.kerby:token-provider 1.0.1
org.apache.logging.log4j:log4j-1.2-api 2.17.2
org.apache.logging.log4j:log4j-api 2.16.0
org.apache.logging.log4j:log4j-api 2.17.1
org.apache.logging.log4j:log4j-api 2.17.2
org.apache.logging.log4j:log4j-core 2.16.0
org.apache.logging.log4j:log4j-core 2.17.1
org.apache.logging.log4j:log4j-core 2.17.2
org.apache.logging.log4j:log4j-jcl 2.17.1
org.apache.logging.log4j:log4j-slf4j-impl 2.17.2
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.maven:maven-builder-support 3.6.3
org.apache.maven:maven-model 3.6.3
org.apache.maven:maven-repository-metadata 3.6.3
org.apache.maven:maven-settings-builder 3.6.3
org.apache.maven:maven-settings 3.6.3
org.apache.orc:orc-core 1.7.4
org.apache.orc:orc-mapreduce 1.7.4
org.apache.orc:orc-shims 1.7.4
org.apache.oro:oro 2.0.8
org.apache.parquet:parquet-avro 1.10.1
org.apache.parquet:parquet-column 1.12.2
org.apache.parquet:parquet-common 1.12.2
org.apache.parquet:parquet-encoding 1.12.2
org.apache.parquet:parquet-format-structures 1.12.2
org.apache.parquet:parquet-format 2.4.0
org.apache.parquet:parquet-hadoop 1.12.2
org.apache.parquet:parquet-jackson 1.12.2
org.apache.spark:spark-catalyst_2.12 3.3.0
org.apache.spark:spark-core_2.12 3.3.0
org.apache.spark:spark-graphx_2.12 3.3.0
org.apache.spark:spark-kvstore_2.12 3.3.0
org.apache.spark:spark-launcher_2.12 3.3.0
org.apache.spark:spark-mllib-local_2.12 3.3.0
org.apache.spark:spark-mllib_2.12 3.3.0
org.apache.spark:spark-network-common_2.12 3.3.0
org.apache.spark:spark-network-shuffle_2.12 3.3.0
org.apache.spark:spark-sketch_2.12 3.3.0
org.apache.spark:spark-sql_2.12 3.3.0
org.apache.spark:spark-streaming_2.12 3.3.0
org.apache.spark:spark-tags_2.12 3.3.0
org.apache.spark:spark-unsafe_2.12 3.3.0
org.apache.xbean:xbean-asm9-shaded 4.20
org.apache.xmlcommons.Version:xml-apis 1.4.01
org.apache.yetus:audience-annotations 0.12.0
org.apache.zookeeper:zookeeper-jute 3.6.2
org.apache.zookeeper:zookeeper 3.6.2
org.apache:ivy 2.3.0
org.apache:ivy 2.5.0
org.apache:jsp-api 2.1
org.bdgenomics.adam:adam-codegen-spark2_2.12 0.28.0
org.bdgenomics.adam:adam-core-spark2_2.12 0.28.0
org.bdgenomics.bdg-formats:bdg-formats 0.13.0
org.bdgenomics.utils:utils-cli-spark2_2.12 0.2.15
org.bdgenomics.utils:utils-intervalrdd-spark2_2.12 0.2.15
org.bdgenomics.utils:utils-io-spark2_2.12 0.2.15
org.bdgenomics.utils:utils-metrics-spark2_2.12 0.2.15
org.bdgenomics.utils:utils-misc-spark2_2.12 0.2.15
org.bouncycastle:bcpg-jdk15on 1.68
org.bouncycastle:bcpkix-jdk15on 1.68
org.bouncycastle:bcprov-jdk15on 1.68
org.broadinstitute.hellbender.Main:gatk-package 4.4.0.0-21-g7415882-SNAPSHOT-local
org.broadinstitute.hellbender.Main:gatk-package 4.4.0.0-21-g7415882-SNAPSHOT-spark
org.checkerframework.checker.qual:checker-compat-qual 2.5.5
org.checkerframework.checker.qual:checker-qual 3.21.3
org.clapper:12 1.3.3
org.codehaus.groovy:groovy-ant 3.0.10
org.codehaus.groovy:groovy-astbuilder 3.0.10
org.codehaus.groovy:groovy-console 3.0.10
org.codehaus.groovy:groovy-datetime 3.0.10
org.codehaus.groovy:groovy-dateutil 3.0.10
org.codehaus.groovy:groovy-docgenerator 3.0.10
org.codehaus.groovy:groovy-groovydoc 3.0.10
org.codehaus.groovy:groovy-json 3.0.10
org.codehaus.groovy:groovy-nio 3.0.10
org.codehaus.groovy:groovy-sql 3.0.10
org.codehaus.groovy:groovy-swing 3.0.10
org.codehaus.groovy:groovy-templates 3.0.10
org.codehaus.groovy:groovy-test 3.0.10
org.codehaus.groovy:groovy-xml 3.0.10
org.codehaus.groovy:groovy 3.0.10
org.codehaus.janino:commons-compiler 3.0.16
org.codehaus.janino:janino 3.0.16
org.codehaus.jettison:jettison 1.1
org.codehaus.mojo:animal-sniffer-annotations 1.17
org.codehaus.mojo:animal-sniffer-annotations 1.20
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-interpolation 1.26
org.codehaus.plexus:plexus-utils 1.5.6
org.codehaus.plexus:plexus-utils 3.3.0
org.codehaus.plexus:plexus-utils 3.4.1
org.codehaus.woodstox:stax2-api 4.2.1
org.conscrypt:conscrypt-openjdk-uber 2.5.1
org.debian.security.UpdateCertificates:ca-certificates-java *
org.disq-bio:disq 0.3.6
org.eclipse.jdt:org.eclipse.jdt.annotation 1.1.0
org.eclipse.jetty.websocket:websocket-api 9.4.40.v20210413
org.eclipse.jetty.websocket:websocket-api 9.4.43.v20210629
org.glassfish.jaxb:jaxb-core 3.0.0
org.eclipse.jetty.websocket:websocket-client 9.4.40.v20210413
org.eclipse.jetty.websocket:websocket-client 9.4.43.v20210629
org.eclipse.jetty.websocket:websocket-common 9.4.40.v20210413
org.eclipse.jetty.websocket:websocket-common 9.4.43.v20210629
org.eclipse.jetty:jetty-client 9.4.40.v20210413
org.eclipse.jetty:jetty-client 9.4.43.v20210629
org.eclipse.jetty:jetty-client 9.4.46.v20220331
org.eclipse.jetty:jetty-continuation 9.4.46.v20220331
org.eclipse.jetty:jetty-http 9.4.40.v20210413
org.eclipse.jetty:jetty-http 9.4.43.v20210629
org.eclipse.jetty:jetty-http 9.4.46.v20220331
org.eclipse.jetty:jetty-io 9.4.40.v20210413
org.eclipse.jetty:jetty-io 9.4.43.v20210629
org.eclipse.jetty:jetty-io 9.4.46.v20220331
org.eclipse.jetty:jetty-plus 9.4.46.v20220331
org.eclipse.jetty:jetty-proxy 9.4.46.v20220331
org.eclipse.jetty:jetty-security 9.4.40.v20210413
org.eclipse.jetty:jetty-security 9.4.46.v20220331
org.eclipse.jetty:jetty-server 9.4.46.v20220331
org.eclipse.jetty:jetty-servlet 9.4.40.v20210413
org.eclipse.jetty:jetty-servlet 9.4.46.v20220331
org.eclipse.jetty:jetty-servlets 9.4.46.v20220331
org.eclipse.jetty:jetty-util-ajax 9.4.40.v20210413
org.eclipse.jetty:jetty-util-ajax 9.4.43.v20210629
org.eclipse.jetty:jetty-util 9.4.40.v20210413
org.eclipse.jetty:jetty-util 9.4.43.v20210629
org.eclipse.jetty:jetty-util 9.4.46.v20220331
org.eclipse.jetty:jetty-webapp 9.4.40.v20210413
org.eclipse.jetty:jetty-webapp 9.4.43.v20210629
org.eclipse.jetty:jetty-xml 9.4.40.v20210413
org.eclipse.jetty:jetty-xml 9.4.43.v20210629
org.eclipse.jgit:org.eclipse.jgit 4.1.1.201511131810-r
org.eclipse.jgit:org.eclipse.jgit 5.7.0.202003110725-r
org.freemarker.freemarker:freemarker 2.3.30
org.fusesource.hawtjni:hawtjni-runtime 1.17
org.fusesource.jansi:jansi-freebsd32 1.8
org.fusesource.jansi:jansi-freebsd64 1.8
org.fusesource.jansi:jansi-linux32 1.8
org.fusesource.jansi:jansi-linux64 1.8
org.fusesource.jansi:jansi-native 1.8
org.fusesource.jansi:jansi-osx 1.8
org.fusesource.jansi:jansi-windows32 1.8
org.fusesource.jansi:jansi-windows64 1.8
org.fusesource.jansi:jansi 1.18
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.genomicsdb:genomicsdb 1.4.4
org.glassfish.hk2.external:aopalliance-repackaged 2.6.1
org.glassfish.hk2.external:jakarta.inject 2.6.1
org.glassfish.hk2:hk2-api 2.6.1
org.glassfish.hk2:hk2-locator 2.6.1
org.glassfish.hk2:hk2-utils 2.6.1
org.glassfish.hk2:osgi-resource-locator 1.0.3
org.glassfish.jaxb:jaxb-runtime 2.3.2
org.glassfish.jaxb:jaxb-runtime 3.0.0
org.glassfish.jaxb:txw2 3.0.0
org.glassfish.jersey.containers:jersey-container-servlet-core 2.34
org.glassfish.jersey.containers:jersey-container-servlet 2.34
org.glassfish.jersey.core:jersey-client 2.34
org.glassfish.jersey.core:jersey-common 2.34
org.glassfish.jersey.core:jersey-server 2.34
org.glassfish.jersey.inject:jersey-hk2 2.34
org.gradle.launcher.GradleMain:gradle-launcher 7.5.1
org.hipparchus:hipparchus-core 2.0
org.hipparchus:hipparchus-stat 2.0
org.javassist:javassist 3.18.2-GA
org.javassist:javassist 3.25.0-GA
org.jctools:jctools-core 3.1.0
org.jdom2:jdom2 2.0.6
org.jetbrains.annotations:annotations 17.0.0
org.jetbrains.annotations:annotations 20.1.0
org.jgrapht:jgrapht-core 1.1.0
org.jgrapht:jgrapht-io 1.1.0
org.jline:jline-builtins 3.9.0
org.jline:jline-reader 3.9.0
org.jline:jline-remote-ssh 3.9.0
org.jline:jline-remote-telnet 3.9.0
org.jline:jline-style 3.9.0
org.jline:jline-terminal-jansi 3.9.0
org.jline:jline-terminal-jna 3.9.0
org.jline:jline-terminal 3.9.0
org.jline:jline 3.9.0
org.jpmml:pmml-model 1.4.8
org.json:json 20200518
org.json4s:12 3.7.0-M11
org.jsoup:jsoup 1.15.1
org.lz4.java:lz4-java 1.8.0
org.objectweb.asm.commons:asm-commons 7.3.1
org.objectweb.asm.commons:asm-commons 9.2
org.objectweb.asm.tree.analysis:asm-analysis 7.3.1
org.objectweb.asm.tree.analysis:asm-analysis 9.2
org.objectweb.asm.tree:asm-tree 7.3.1
org.objectweb.asm.tree:asm-tree 9.2
org.objectweb.asm.util:asm-util 7.3.1
org.objectweb.asm:asm 7.3.1
org.objectweb.asm:asm 8.0.1
org.objectweb.asm:asm 9.2
org.objenesis:objenesis 2.5.1
org.objenesis:objenesis 2.6
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.opentest4j:opentest4j 1.2.0
org.reflections:reflections 0.9.10
org.scala-lang.modules.scala-xml:12 1.2.0
org.scala-lang.modules:12 1.1.2
org.scala-lang.modules:12 2.2.0
org.scala-lang.scala-library:scala-library 2.12.15
org.scala-lang.scala-reflect:scala-reflect 2.12.15
org.scalanlp:12 1.2
org.sharegov:mjson 1.4.1
org.slf4j:jcl-over-slf4j 1.7.30
org.slf4j:jcl-over-slf4j 1.7.32
org.slf4j:jul-to-slf4j 1.7.30
org.slf4j:log4j-over-slf4j 1.7.30
org.slf4j:slf4j-api 1.7.2
org.slf4j:slf4j-api 1.7.30
org.slf4j:slf4j-api 1.7.33
org.slf4j:slf4j-log4j12 1.7.21
org.slf4j:slf4j-log4j12 1.7.30
org.sonatype.plexus:plexus-cipher 1.7
org.sonatype.plexus:plexus-sec-dispatcher 1.4
org.spark-project.spark:unused 1.0.0
org.testng:testng 6.3.1
org.threeten:threeten-extra 1.7.0
org.threeten:threetenbp 1.5.2
org.tukaani.xz:xz 1.8
org.tukaani.xz:xz 1.9
org.typelevel:12 0.17.0
org.typelevel:12 1.1.1
org.typelevel:12 2.0.1
org.typelevel:12 2.1.1
org.vafer:jdependency 2.7.0
org.xerial.snappy:snappy-java 1.1.8.4
org.xerial:sqlite-jdbc 3.36.0.3
org.yaml:snakeyaml 1.28
perfmark-api:perfmark-api 0.23.0
picard:picard 3.0.0
picard:picard 3.0.0-sources
pl.edu.icm:JLargeArrays 1.5
regexp:regexp 1.3
rocksdbjni:rocksdbjni 6.20.3
shadow:shadow 7.1.1
shims:shims 0.9.25
software.amazon.ion:ion-java 1.0.2
tink:tink 1.6.1
tomlj:tomlj 1.0.0
trove4j:trove4j 1.0.20200330
xmlpull:xmlpull 1.1.3.1
xpp3_min:xpp3_min 1.1.4c

bash 5.2.2

actions/checkout v3
actions/download-artifact v3
actions/setup-java v3
actions/upload-artifact v3
broadinstitute/carrot-publish-github-action 0.6.0
docker/build-push-action ad44023a93711e3deb337508980b4b5e9bcdc5dc
docker/build-push-action v4
docker/login-action f054a8b539a109f9f41c372932f1ae047eff08c9
docker/metadata-action 98669ae865ea3cffbcbaa878cf57c20bbf1c6c38
docker/metadata-action v4
docker/setup-buildx-action v2
google-github-actions/auth v0
google-github-actions/setup-gcloud v0

github.com/git-lfs/git-lfs (devel)
stdlib 1.19.2