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biocontainers/bioconductor-genomicalignments : v1.10.0-1b1-deb_cv1
Latest release: over 6 years ago - 526 downloads - 423 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- Biobase 2.34.0
- BiocGenerics 0.20.0
- BiocParallel 1.8.1
- Biostrings 2.42.1
- GenomeInfoDb 1.10.3
- GenomicAlignments 1.10.0
- GenomicRanges 1.26.2
- IRanges 2.8.1
- KernSmooth 2.23-15
- MASS 7.3-45
- Matrix 1.2-7.1
- RCurl 1.95-4.8
- Rsamtools 1.26.1
- S4Vectors 0.12.1
- SummarizedExperiment 1.4.0
- XVector 0.14.0
- base 3.3.3
- bitops 1.0-6
- boot 1.3-18
- class 7.3-14
- cluster 2.0.5
- codetools 0.2-15
- compiler 3.3.3
- datasets 3.3.3
- foreign 0.8-67
- futile.logger 1.4.3
- futile.options 1.0.0
- grDevices 3.3.3
- graphics 3.3.3
- grid 3.3.3
- lambda.r 1.1.9
- lattice 0.20-34
- methods 3.3.3
- mgcv 1.8-16
- nlme 3.1-129
- nnet 7.3-12
- parallel 3.3.3
- rpart 4.1-10
- snow 0.4-2
- spatial 7.3-11
- splines 3.3.3
- stats4 3.3.3
- stats 3.3.3
- survival 2.40-1
- tcltk 3.3.3
- tools 3.3.3
- translations 3.3.3
- utils 3.3.3
- debian/adduser 3.115
- debian/apt 1.4.6
- debian/autotools-dev 20161112.1
- debian/base-files 9.9
- debian/base-passwd 3.5.43
- debian/bash 4.4-5
- debian/binutils 2.28-5
- debian/bsdutils 1:2.29.2-1
- debian/build-essential 12.3
- debian/bzip2-doc 1.0.6-8.1
- debian/bzip2 1.0.6-8.1
- debian/ca-certificates 20161130 nmu1
- debian/cdbs 0.4.150
- debian/coreutils 8.26-3
- debian/cpp-6 6.3.0-18 deb9u1
- debian/cpp 4:6.3.0-4
- debian/dash 0.5.8-2.4
- debian/dbus 1.10.26-0 deb9u1
- debian/debconf 1.5.61
- debian/debian-archive-keyring 2017.5
- debian/debianutils 4.8.1.1
- debian/diffutils 1:3.5-3
- debian/dirmngr 2.1.18-8~deb9u1
- debian/dpkg-dev 1.18.24
- debian/dpkg 1.18.24
- debian/e2fslibs 1.43.4-2
- debian/e2fsprogs 1.43.4-2
- debian/fakeroot 1.21-3.1
- debian/findutils 4.6.0 git 20161106-2
- debian/fontconfig-config 2.11.0-6.7
- debian/fontconfig 2.11.0-6.7 b1
- debian/fonts-dejavu-core 2.37-1
- debian/fuse 2.9.7-1
- debian/g -6 6.3.0-18 deb9u1
- debian/g 4:6.3.0-4
- debian/gcc-6-base 6.3.0-18 deb9u1
- debian/gcc-6 6.3.0-18 deb9u1
- debian/gcc 4:6.3.0-4
- debian/gfortran-6 6.3.0-18 deb9u1
- debian/gfortran 4:6.3.0-4
- debian/gnupg-agent 2.1.18-8~deb9u1
- debian/gnupg-l10n 2.1.18-8~deb9u1
- debian/gnupg 2.1.18-8~deb9u1
- debian/gpgv 2.1.18-6
- debian/grep 2.27-2
- debian/gzip 1.6-5 b1
- debian/hostname 3.18 b1
- debian/icu-devtools 57.1-6 deb9u2
- debian/inetutils-ping 2:1.9.4-2 b1
- debian/init-system-helpers 1.48
- debian/iproute2 4.9.0-1
- debian/krb5-locales 1.15-1 deb9u1
- debian/libacl1 2.2.52-3 b1
- debian/libalgorithm-diff-perl 1.19.03-1
- debian/libalgorithm-diff-xs-perl 0.04-4 b2
- debian/libalgorithm-merge-perl 0.08-3
- debian/libapparmor1 2.11.0-3 deb9u2
- debian/libapt-pkg5.0 1.4.6
- debian/libasan3 6.3.0-18 deb9u1
- debian/libassuan0 2.4.3-2
- debian/libatomic1 6.3.0-18 deb9u1
- debian/libattr1 1:2.4.47-2 b2
- debian/libaudit-common 1:2.6.7-2
- debian/libaudit1 1:2.6.7-2
- debian/libauthen-sasl-perl 2.1600-1
- debian/libblas-common 3.7.0-2
- debian/libblas-dev 3.7.0-2
- debian/libblas3 3.7.0-2
- debian/libblkid1 2.29.2-1
- debian/libbsd0 0.8.3-1
- debian/libbz2-1.0 1.0.6-8.1
- debian/libbz2-dev 1.0.6-8.1
- debian/libc-bin 2.24-11 deb9u1
- debian/libc-dev-bin 2.24-11 deb9u3
- debian/libc6-dev 2.24-11 deb9u3
- debian/libc6 2.24-11 deb9u3
- debian/libcairo2 1.14.8-1
- debian/libcap-ng0 0.7.7-3 b1
- debian/libcc1-0 6.3.0-18 deb9u1
- debian/libcilkrts5 6.3.0-18 deb9u1
- debian/libcomerr2 1.43.4-2
- debian/libcurl3 7.52.1-5 deb9u6
- debian/libdatrie1 0.2.10-4 b1
- debian/libdb5.3 5.3.28-12 b1
- debian/libdbus-1-3 1.10.26-0 deb9u1
- debian/libdebconfclient0 0.227
- debian/libdpkg-perl 1.18.24
- debian/libdrm-amdgpu1 2.4.74-1
- debian/libdrm-intel1 2.4.74-1
- debian/libdrm-nouveau2 2.4.74-1
- debian/libdrm-radeon1 2.4.74-1
- debian/libdrm2 2.4.74-1
- debian/libedit2 3.1-20160903-3
- debian/libelf1 0.168-1
- debian/libencode-locale-perl 1.05-1
- debian/libexpat1 2.2.0-2 deb9u1
- debian/libfakeroot 1.21-3.1
- debian/libfdisk1 2.29.2-1
- debian/libffi6 3.2.1-6
- debian/libfile-basedir-perl 0.07-1
- debian/libfile-desktopentry-perl 0.22-1
- debian/libfile-fcntllock-perl 0.22-3 b2
- debian/libfile-listing-perl 6.04-1
- debian/libfile-mimeinfo-perl 0.27-1
- debian/libfont-afm-perl 1.20-2
- debian/libfontconfig1 2.11.0-6.7 b1
- debian/libfontenc1 1:1.1.3-1 b2
- debian/libfreetype6 2.6.3-3.2
- debian/libfuse2 2.9.7-1
- debian/libgcc-6-dev 6.3.0-18 deb9u1
- debian/libgcc1 1:6.3.0-18 deb9u1
- debian/libgcrypt20 1.7.6-2
- debian/libgdbm3 1.8.3-14
- debian/libgfortran-6-dev 6.3.0-18 deb9u1
- debian/libgfortran3 6.3.0-18 deb9u1
- debian/libgl1-mesa-dri 13.0.6-1 b2
- debian/libgl1-mesa-glx 13.0.6-1 b2
- debian/libglapi-mesa 13.0.6-1 b2
- debian/libglib2.0-0 2.50.3-2
- debian/libglib2.0-data 2.50.3-2
- debian/libgmp10 2:6.1.2 dfsg-1
- debian/libgnutls30 3.5.8-5 deb9u3
- debian/libgomp1 6.3.0-18 deb9u1
- debian/libgpg-error0 1.26-2
- debian/libgpm2 1.20.4-6.2 b1
- debian/libgraphite2-3 1.3.10-1
- debian/libgssapi-krb5-2 1.15-1 deb9u1
- debian/libharfbuzz0b 1.4.2-1
- debian/libhogweed4 3.3-1 b2
- debian/libhtml-form-perl 6.03-1
- debian/libhtml-format-perl 2.12-1
- debian/libhtml-parser-perl 3.72-3
- debian/libhtml-tagset-perl 3.20-3
- debian/libhtml-tree-perl 5.03-2
- debian/libhttp-cookies-perl 6.01-1
- debian/libhttp-daemon-perl 6.01-1
- debian/libhttp-date-perl 6.02-1
- debian/libhttp-message-perl 6.11-1
- debian/libhttp-negotiate-perl 6.00-2
- debian/libice6 2:1.0.9-2
- debian/libicu-dev 57.1-6 deb9u2
- debian/libicu57 57.1-6 deb9u2
- debian/libidn11 1.33-1
- debian/libidn2-0 0.16-1 deb9u1
- debian/libio-html-perl 1.001-1
- debian/libio-socket-ssl-perl 2.044-1
- debian/libipc-system-simple-perl 1.25-3
- debian/libisl15 0.18-1
- debian/libitm1 6.3.0-18 deb9u1
- debian/libjbig0 2.1-3.1 b2
- debian/libjpeg-dev 1:1.5.1-2
- debian/libjpeg62-turbo-dev 1:1.5.1-2
- debian/libjpeg62-turbo 1:1.5.1-2
- debian/libk5crypto3 1.15-1 deb9u1
- debian/libkeyutils1 1.5.9-9
- debian/libkrb5-3 1.15-1 deb9u1
- debian/libkrb5support0 1.15-1 deb9u1
- debian/libksba8 1.3.5-2
- debian/liblapack-dev 3.7.0-2
- debian/liblapack3 3.7.0-2
- debian/libldap-2.4-2 2.4.44 dfsg-5 deb9u1
- debian/libldap-common 2.4.44 dfsg-5 deb9u1
- debian/libllvm3.9 1:3.9.1-9
- debian/liblocale-gettext-perl 1.07-3 b1
- debian/liblsan0 6.3.0-18 deb9u1
- debian/liblwp-mediatypes-perl 6.02-1
- debian/liblwp-protocol-https-perl 6.06-2
- debian/liblz4-1 0.0~r131-2 b1
- debian/liblzma-dev 5.2.2-1.2 b1
- debian/liblzma5 5.2.2-1.2 b1
- debian/libmailtools-perl 2.18-1
- debian/libmnl0 1.0.4-2
- debian/libmount1 2.29.2-1
- debian/libmpc3 1.0.3-1 b2
- debian/libmpfr4 3.1.5-1
- debian/libmpx2 6.3.0-18 deb9u1
- debian/libncurses5-dev 6.0 20161126-1 deb9u2
- debian/libncurses5 6.0 20161126-1 deb9u2
- debian/libncursesw5 6.0 20161126-1 deb9u2
- debian/libnet-dbus-perl 1.1.0-4 b1
- debian/libnet-http-perl 6.12-1
- debian/libnet-smtp-ssl-perl 1.04-1
- debian/libnet-ssleay-perl 1.80-1
- debian/libnettle6 3.3-1 b2
- debian/libnghttp2-14 1.18.1-1
- debian/libnpth0 1.3-1
- debian/libp11-kit0 0.23.3-2
- debian/libpam-modules-bin 1.1.8-3.6
- debian/libpam-modules 1.1.8-3.6
- debian/libpam-runtime 1.1.8-3.6
- debian/libpam0g 1.1.8-3.6
- debian/libpango-1.0-0 1.40.5-1
- debian/libpangocairo-1.0-0 1.40.5-1
- debian/libpangoft2-1.0-0 1.40.5-1
- debian/libpaper-utils 1.1.24 nmu5
- debian/libpaper1 1.1.24 nmu5
- debian/libpciaccess0 0.13.4-1 b2
- debian/libpcre16-3 2:8.39-3
- debian/libpcre3-dev 2:8.39-3
- debian/libpcre32-3 2:8.39-3
- debian/libpcre3 2:8.39-3
- debian/libpcrecpp0v5 2:8.39-3
- debian/libperl5.24 5.24.1-3 deb9u3
- debian/libpixman-1-0 0.34.0-1
- debian/libpng-dev 1.6.28-1
- debian/libpng-tools 1.6.28-1
- debian/libpng16-16 1.6.28-1
- debian/libpsl5 0.17.0-3
- debian/libquadmath0 6.3.0-18 deb9u1
- debian/libreadline-dev 7.0-3
- debian/libreadline7 7.0-3
- debian/librtmp1 2.4 20151223.gitfa8646d.1-1 b1
- debian/libsasl2-2 2.1.27~101-g0780600 dfsg-3
- debian/libsasl2-modules-db 2.1.27~101-g0780600 dfsg-3
- debian/libsasl2-modules 2.1.27~101-g0780600 dfsg-3
- debian/libselinux1 2.6-3 b1
- debian/libsemanage-common 2.6-2
- debian/libsemanage1 2.6-2
- debian/libsensors4 1:3.4.0-4
- debian/libsepol1 2.6-2
- debian/libsm6 2:1.2.2-1 b3
- debian/libsmartcols1 2.29.2-1
- debian/libsqlite3-0 3.16.2-5 deb9u1
- debian/libss2 1.43.4-2
- debian/libssh2-1 1.7.0-1
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- debian/libstdc -6-dev 6.3.0-18 deb9u1
- debian/libstdc 6 6.3.0-18 deb9u1
- debian/libsystemd0 232-25
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- debian/libthai-data 0.1.26-1
- debian/libthai0 0.1.26-1
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- debian/libtiff5 4.0.8-2 deb9u2
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- debian/libtinfo-dev 6.0 20161126-1 deb9u2
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- debian/libtk8.6 8.6.6-1 b1
- debian/libtsan0 6.3.0-18 deb9u1
- debian/libtxc-dxtn-s2tc 1.0 git20151227-2
- debian/libubsan0 6.3.0-18 deb9u1
- debian/libudev1 232-25
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- debian/liburi-perl 1.71-1
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- debian/libxcb-dri2-0 1.12-1
- debian/libxcb-dri3-0 1.12-1
- debian/libxcb-glx0 1.12-1
- debian/libxcb-present0 1.12-1
- debian/libxcb-render0 1.12-1
- debian/libxcb-shape0 1.12-1
- debian/libxcb-shm0 1.12-1
- debian/libxcb-sync1 1.12-1
- debian/libxcb1 1.12-1
- debian/libxcomposite1 1:0.4.4-2
- debian/libxcursor1 1:1.1.14-1 deb9u1
- debian/libxdamage1 1:1.1.4-2 b3
- debian/libxdmcp6 1:1.1.2-3
- debian/libxext6 2:1.3.3-1 b2
- debian/libxfixes3 1:5.0.3-1
- debian/libxft2 2.3.2-1 b2
- debian/libxi6 2:1.7.9-1
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- debian/libxml-xpathengine-perl 0.13-1
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- debian/libxxf86dga1 2:1.1.4-1 b3
- debian/libxxf86vm1 1:1.1.4-1 b2
- debian/linux-libc-dev 4.9.88-1 deb9u1
- debian/login 1:4.4-4.1
- debian/lsb-base 9.20161125
- debian/make 4.1-9.1
- debian/manpages-dev 4.10-2
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- debian/mawk 1.3.3-17 b3
- debian/mount 2.29.2-1
- debian/multiarch-support 2.24-11 deb9u1
- debian/ncurses-base 6.0 20161126-1
- debian/ncurses-bin 6.0 20161126-1
- debian/netbase 5.4
- debian/openssl 1.1.0f-3 deb9u2
- debian/passwd 1:4.4-4.1
- debian/patch 2.7.5-1 b2
- debian/perl-base 5.24.1-3 deb9u3
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- debian/perl-openssl-defaults 3
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- debian/pinentry-curses 1.0.0-2
- debian/pkg-config 0.29-4 b1
- debian/publicsuffix 20180218.2049-0 deb9u1
- debian/r-base-core 3.3.3-1
- debian/r-base-dev 3.3.3-1
- debian/r-bioc-biobase 2.34.0-1
- debian/r-bioc-biocgenerics 0.20.0-1
- debian/r-bioc-biocparallel 1.8.1-1
- debian/r-bioc-biostrings 2.42.1-1
- debian/r-bioc-genomeinfodb 1.10.3-1
- debian/r-bioc-genomicalignments 1.10.0-1 b1
- debian/r-bioc-genomicranges 1.26.2-1 b1
- debian/r-bioc-iranges 2.8.1-1 b1
- debian/r-bioc-rsamtools 1.26.1-2 b1
- debian/r-bioc-s4vectors 0.12.1-2 b1
- debian/r-bioc-summarizedexperiment 1.4.0-2
- debian/r-bioc-xvector 0.14.0-1 b1
- debian/r-cran-bitops 1.0-6-1
- debian/r-cran-boot 1.3-18-2
- debian/r-cran-class 7.3-14-1
- debian/r-cran-cluster 2.0.5-1
- debian/r-cran-codetools 0.2-15-1
- debian/r-cran-foreign 0.8.67-1
- debian/r-cran-futile.logger 1.4.3-1
- debian/r-cran-futile.options 1.0.0-2
- debian/r-cran-kernsmooth 2.23-15-2
- debian/r-cran-lambda.r 1.1.9-1
- debian/r-cran-lattice 0.20-34-1
- debian/r-cran-mass 7.3-45-1
- debian/r-cran-matrix 1.2-7.1-1
- debian/r-cran-mgcv 1.8-16-1
- debian/r-cran-nlme 3.1.129-1
- debian/r-cran-nnet 7.3-12-1
- debian/r-cran-rcurl 1.95-4.8-2
- debian/r-cran-rpart 4.1-10-2
- debian/r-cran-snow 1:0.4.2-1
- debian/r-cran-spatial 7.3-11-1
- debian/r-cran-survival 2.40-1-1
- debian/r-doc-html 3.3.3-1
- debian/r-recommended 3.3.3-1
- debian/readline-common 7.0-3
- debian/rename 0.20-4
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- debian/sensible-utils 0.0.9
- debian/sgml-base 1.29
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- debian/sysvinit-utils 2.88dsf-59.9
- debian/tar 1.29b-1.1
- debian/tzdata 2017b-1
- debian/ucf 3.0036
- debian/unzip 6.0-21
- debian/util-linux 2.29.2-1
- debian/x11-common 1:7.7 19
- debian/x11-utils 7.7 3 b1
- debian/x11-xserver-utils 7.7 7 b1
- debian/xauth 1:1.0.9-1 b2
- debian/xdg-user-dirs 0.15-2 b1
- debian/xdg-utils 1.1.1-1 deb9u1
- debian/xml-core 0.17
- debian/xz-utils 5.2.2-1.2 b1
- debian/zip 3.0-11 b1
- debian/zlib1g-dev 1:1.2.8.dfsg-5
- debian/zlib1g 1:1.2.8.dfsg-5
- bash 4.4.12