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zjnolen/ngsld : latest

A simple docker image of ngsLD - a program to estimate pairwise linkage disequilibrium (LD)

Ubuntu 20.04.6 LTS

Latest release: over 1 year ago - 276 downloads - 383 dependencies

JSON

Dependencies

BH 1.66.0-1
BiocManager 1.30.10
BiocVersion 3.10.1
KernSmooth 2.23-16
MASS 7.3-51.5
Matrix 1.2-18
R6 2.4.1
RColorBrewer 1.1-2
Rcpp 1.0.3
assertthat 0.2.1
base 3.6.3
boot 1.3-24
class 7.3-15
cli 2.0.1
cluster 2.1.0
codetools 0.2-16
colorspace 1.4-1
compiler 3.6.3
crayon 1.3.4
datasets 3.6.3
digest 0.6.25
ellipsis 0.3.0
fansi 0.4.1
farver 2.0.3
foreign 0.8-75
gdtools 0.2.1
getopt 1.20.3
ggplot2 3.2.1
glue 1.3.1
grDevices 3.6.3
graphics 3.6.3
grid 3.6.3
gtable 0.3.0
gtools 3.8.1
labeling 0.3
lattice 0.20-40
lazyeval 0.2.2
lifecycle 0.1.0
littler 0.3.9
magrittr 1.5
methods 3.6.3
mgcv 1.8-31
munsell 0.5.0
nlme 3.1-144
nnet 7.3-13
optparse 1.6.4
parallel 3.6.3
pillar 1.4.3
pkgKitten 0.1.5
pkgconfig 2.0.3
plyr 1.8.5
reshape2 1.4.3
rlang 0.4.4
rpart 4.1-15
scales 1.1.0
spatial 7.3-11
splines 3.6.3
stats4 3.6.3
stats 3.6.3
stringi 1.4.6
stringr 1.4.0
survival 3.1-8
svglite 1.2.3
systemfonts 0.1.1
tcltk 3.6.3
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 2.1.3
tools 3.6.3
translations 3.6.3
utf8 1.1.4
utils 3.6.3
vctrs 0.2.3
viridisLite 0.3.0
withr 2.1.2

ubuntu/adduser 3.118ubuntu2
ubuntu/apt 2.0.9
ubuntu/base-files 11ubuntu5.7
ubuntu/base-passwd 3.5.47
ubuntu/bash 5.0-6ubuntu1.2
ubuntu/binutils-common 2.34-6ubuntu1.5
ubuntu/binutils-x86-64-linux-gnu 2.34-6ubuntu1.5
ubuntu/binutils 2.34-6ubuntu1.5
ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
ubuntu/build-essential 12.8ubuntu1.1
ubuntu/bzip2 1.0.8-2
ubuntu/ca-certificates 20230311ubuntu0.20.04.1
ubuntu/coreutils 8.30-3ubuntu2
ubuntu/cpp-9 9.4.0-1ubuntu1~20.04.1
ubuntu/cpp 4:9.3.0-1ubuntu2
ubuntu/dash 0.5.10.2-6
ubuntu/debconf 1.5.73
ubuntu/debianutils 4.9.1
ubuntu/diffutils 1:3.7-3
ubuntu/dirmngr 2.2.19-3ubuntu2.2
ubuntu/dpkg-dev 1.19.7ubuntu3.2
ubuntu/dpkg 1.19.7ubuntu3.2
ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
ubuntu/fdisk 2.34-0.1ubuntu9.3
ubuntu/findutils 4.7.0-1ubuntu1
ubuntu/fontconfig-config 2.13.1-2ubuntu3
ubuntu/fontconfig 2.13.1-2ubuntu3
ubuntu/fonts-dejavu-core 2.37-1
ubuntu/g -9 9.4.0-1ubuntu1~20.04.1
ubuntu/g 4:9.3.0-1ubuntu2
ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
ubuntu/gcc-9-base 9.4.0-1ubuntu1~20.04.1
ubuntu/gcc-9 9.4.0-1ubuntu1~20.04.1
ubuntu/gcc 4:9.3.0-1ubuntu2
ubuntu/git-man 1:2.25.1-1ubuntu3.11
ubuntu/git 1:2.25.1-1ubuntu3.11
ubuntu/gnupg-l10n 2.2.19-3ubuntu2.2
ubuntu/gnupg-utils 2.2.19-3ubuntu2.2
ubuntu/gnupg2 2.2.19-3ubuntu2.2
ubuntu/gnupg 2.2.19-3ubuntu2.2
ubuntu/gpg-agent 2.2.19-3ubuntu2.2
ubuntu/gpg-wks-client 2.2.19-3ubuntu2.2
ubuntu/gpg-wks-server 2.2.19-3ubuntu2.2
ubuntu/gpg 2.2.19-3ubuntu2.2
ubuntu/gpgconf 2.2.19-3ubuntu2.2
ubuntu/gpgsm 2.2.19-3ubuntu2.2
ubuntu/gpgv 2.2.19-3ubuntu2.2
ubuntu/grep 3.4-1
ubuntu/gzip 1.10-0ubuntu4.1
ubuntu/hostname 3.23
ubuntu/init-system-helpers 1.57
ubuntu/libacl1 2.2.53-6
ubuntu/libapt-pkg6.0 2.0.9
ubuntu/libasan5 9.4.0-1ubuntu1~20.04.1
ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libassuan0 2.5.3-7ubuntu2
ubuntu/libatomic1 10.3.0-1ubuntu1~20.04
ubuntu/libattr1 1:2.4.48-5
ubuntu/libaudit-common 1:2.8.5-2ubuntu6
ubuntu/libaudit1 1:2.8.5-2ubuntu6
ubuntu/libbinutils 2.34-6ubuntu1.5
ubuntu/libblas3 3.9.0-1build1
ubuntu/libblkid1 2.34-0.1ubuntu9.3
ubuntu/libboost-dev 1.71.0.0ubuntu2
ubuntu/libboost1.71-dev 1.71.0-6ubuntu6
ubuntu/libbrotli1 1.0.7-6ubuntu0.1
ubuntu/libbsd0 0.10.0-1
ubuntu/libbz2-1.0 1.0.8-2
ubuntu/libc-bin 2.31-0ubuntu9.9
ubuntu/libc-dev-bin 2.31-0ubuntu9.9
ubuntu/libc6-dev 2.31-0ubuntu9.9
ubuntu/libc6 2.31-0ubuntu9.9
ubuntu/libcairo2 1.16.0-4ubuntu1
ubuntu/libcap-ng0 0.7.9-2.1build1
ubuntu/libcc1-0 10.3.0-1ubuntu1~20.04
ubuntu/libcom-err2 1.45.5-2ubuntu1.1
ubuntu/libcrypt-dev 1:4.4.10-10ubuntu4
ubuntu/libcrypt1 1:4.4.10-10ubuntu4
ubuntu/libctf-nobfd0 2.34-6ubuntu1.5
ubuntu/libctf0 2.34-6ubuntu1.5
ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.18
ubuntu/libcurl4 7.68.0-1ubuntu2.18
ubuntu/libdatrie1 0.2.12-3
ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
ubuntu/libdebconfclient0 0.251ubuntu1
ubuntu/libdpkg-perl 1.19.7ubuntu3.2
ubuntu/liberror-perl 0.17029-1
ubuntu/libexpat1 2.2.9-1ubuntu0.6
ubuntu/libext2fs2 1.45.5-2ubuntu1.1
ubuntu/libfdisk1 2.34-0.1ubuntu9.3
ubuntu/libffi7 3.3-4
ubuntu/libfontconfig1 2.13.1-2ubuntu3
ubuntu/libfreetype6 2.10.1-2ubuntu0.3
ubuntu/libfribidi0 1.0.8-2ubuntu0.1
ubuntu/libgcc-9-dev 9.4.0-1ubuntu1~20.04.1
ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
ubuntu/libgdbm-compat4 1.18.1-5
ubuntu/libgdbm6 1.18.1-5
ubuntu/libgfortran5 10.3.0-1ubuntu1~20.04
ubuntu/libglib2.0-0 2.64.6-1~ubuntu20.04.4
ubuntu/libgmp10 2:6.2.0 dfsg-4ubuntu0.1
ubuntu/libgnutls30 3.6.13-2ubuntu1.8
ubuntu/libgomp1 10.3.0-1ubuntu1~20.04
ubuntu/libgpg-error0 1.37-1
ubuntu/libgraphite2-3 1.3.13-11build1
ubuntu/libgsl-dev 2.5 dfsg-6build1
ubuntu/libgsl23 2.5 dfsg-6build1
ubuntu/libgslcblas0 2.5 dfsg-6build1
ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.3
ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libharfbuzz0b 2.6.4-1ubuntu4.2
ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libice6 2:1.0.10-0ubuntu1
ubuntu/libicu66 66.1-2ubuntu2.1
ubuntu/libidn2-0 2.2.0-2
ubuntu/libisl22 0.22.1-1
ubuntu/libitm1 10.3.0-1ubuntu1~20.04
ubuntu/libjbig0 2.1-3.1ubuntu0.20.04.1
ubuntu/libjpeg-turbo8 2.0.3-0ubuntu1.20.04.3
ubuntu/libjpeg8 8c-2ubuntu8
ubuntu/libk5crypto3 1.17-6ubuntu4.3
ubuntu/libkeyutils1 1.6-6ubuntu1.1
ubuntu/libkrb5-26-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libkrb5-3 1.17-6ubuntu4.3
ubuntu/libkrb5support0 1.17-6ubuntu4.3
ubuntu/libksba8 1.3.5-2ubuntu0.20.04.2
ubuntu/liblapack3 3.9.0-1build1
ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.9
ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.9
ubuntu/liblsan0 10.3.0-1ubuntu1~20.04
ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
ubuntu/liblzma5 5.2.4-1ubuntu1.1
ubuntu/libmount1 2.34-0.1ubuntu9.3
ubuntu/libmpc3 1.1.0-1
ubuntu/libmpfr6 4.0.2-1
ubuntu/libncurses6 6.2-0ubuntu2
ubuntu/libncursesw6 6.2-0ubuntu2
ubuntu/libnettle7 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libnghttp2-14 1.40.0-1build1
ubuntu/libnpth0 1.6-1
ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.6
ubuntu/libpam-modules 1.3.1-5ubuntu4.6
ubuntu/libpam-runtime 1.3.1-5ubuntu4.6
ubuntu/libpam0g 1.3.1-5ubuntu4.6
ubuntu/libpango-1.0-0 1.44.7-2ubuntu4
ubuntu/libpangocairo-1.0-0 1.44.7-2ubuntu4
ubuntu/libpangoft2-1.0-0 1.44.7-2ubuntu4
ubuntu/libpaper-utils 1.1.28
ubuntu/libpaper1 1.1.28
ubuntu/libpcre2-8-0 10.34-7ubuntu0.1
ubuntu/libpcre3 2:8.39-12ubuntu0.1
ubuntu/libperl5.30 5.30.0-9ubuntu0.3
ubuntu/libpixman-1-0 0.38.4-0ubuntu2.1
ubuntu/libpng16-16 1.6.37-2
ubuntu/libprocps8 2:3.3.16-1ubuntu2.3
ubuntu/libpsl5 0.21.0-1ubuntu1
ubuntu/libquadmath0 10.3.0-1ubuntu1~20.04
ubuntu/libreadline8 8.0-4
ubuntu/libroken18-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build1
ubuntu/libsasl2-2 2.1.27 dfsg-2ubuntu0.1
ubuntu/libsasl2-modules-db 2.1.27 dfsg-2ubuntu0.1
ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
ubuntu/libselinux1 3.0-1build2
ubuntu/libsemanage-common 3.0-1build2
ubuntu/libsemanage1 3.0-1build2
ubuntu/libsepol1 3.0-1ubuntu0.1
ubuntu/libsm6 2:1.2.3-1
ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
ubuntu/libsqlite3-0 3.31.1-4ubuntu0.5
ubuntu/libss2 1.45.5-2ubuntu1.1
ubuntu/libssh-4 0.9.3-2ubuntu2.2
ubuntu/libssl1.1 1.1.1f-1ubuntu2.19
ubuntu/libstdc -9-dev 9.4.0-1ubuntu1~20.04.1
ubuntu/libstdc 6 10.3.0-1ubuntu1~20.04
ubuntu/libsystemd0 245.4-4ubuntu3.21
ubuntu/libtasn1-6 4.16.0-2
ubuntu/libtcl8.6 8.6.10 dfsg-1
ubuntu/libthai-data 0.1.28-3
ubuntu/libthai0 0.1.28-3
ubuntu/libtiff5 4.1.0 git191117-2ubuntu0.20.04.8
ubuntu/libtinfo6 6.2-0ubuntu2
ubuntu/libtk8.6 8.6.10-1
ubuntu/libtsan0 10.3.0-1ubuntu1~20.04
ubuntu/libubsan1 10.3.0-1ubuntu1~20.04
ubuntu/libudev1 245.4-4ubuntu3.21
ubuntu/libunistring2 0.9.10-2
ubuntu/libuuid1 2.34-0.1ubuntu9.3
ubuntu/libwebp6 0.6.1-2ubuntu0.20.04.2
ubuntu/libwind0-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libx11-6 2:1.6.9-2ubuntu1.2
ubuntu/libx11-data 2:1.6.9-2ubuntu1.2
ubuntu/libxau6 1:1.0.9-0ubuntu1
ubuntu/libxcb-render0 1.14-2
ubuntu/libxcb-shm0 1.14-2
ubuntu/libxcb1 1.14-2
ubuntu/libxdmcp6 1:1.1.3-0ubuntu1
ubuntu/libxext6 2:1.3.4-0ubuntu1
ubuntu/libxft2 2.3.3-0ubuntu1
ubuntu/libxrender1 1:0.9.10-1
ubuntu/libxss1 1:1.2.3-1
ubuntu/libxt6 1:1.1.5-1
ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
ubuntu/linux-libc-dev 5.4.0-150.167
ubuntu/littler 0.3.9-1
ubuntu/login 1:4.8.1-1ubuntu5.20.04.4
ubuntu/logsave 1.45.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu2
ubuntu/make 4.2.1-1.2
ubuntu/mawk 1.3.4.20200120-2
ubuntu/mount 2.34-0.1ubuntu9.3
ubuntu/ncurses-base 6.2-0ubuntu2
ubuntu/ncurses-bin 6.2-0ubuntu2
ubuntu/openssl 1.1.1f-1ubuntu2.19
ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.4
ubuntu/patch 2.7.6-6
ubuntu/perl-base 5.30.0-9ubuntu0.3
ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.3
ubuntu/perl 5.30.0-9ubuntu0.3
ubuntu/pinentry-curses 1.1.0-3build1
ubuntu/pkg-config 0.29.1-0ubuntu4
ubuntu/procps 2:3.3.16-1ubuntu2.3
ubuntu/r-base-core 3.6.3-2
ubuntu/r-base 3.6.3-2
ubuntu/r-cran-assertthat 0.2.1-1
ubuntu/r-cran-bh 1.66.0-1
ubuntu/r-cran-biocmanager 1.30.10 dfsg-1
ubuntu/r-cran-boot 1.3-24-2
ubuntu/r-cran-class 7.3-15-1
ubuntu/r-cran-cli 2.0.1-1
ubuntu/r-cran-cluster 2.1.0-2
ubuntu/r-cran-codetools 0.2-16-1
ubuntu/r-cran-colorspace 1.4-1 dfsg-1
ubuntu/r-cran-crayon 1.3.4-4ubuntu1
ubuntu/r-cran-digest 0.6.25-1
ubuntu/r-cran-ellipsis 0.3.0-1
ubuntu/r-cran-fansi 0.4.1-1
ubuntu/r-cran-farver 2.0.3-1build1
ubuntu/r-cran-foreign 0.8.75-1
ubuntu/r-cran-gdtools 0.2.1-1build1
ubuntu/r-cran-getopt 1.20.3-2
ubuntu/r-cran-ggplot2 3.2.1 dfsg-2
ubuntu/r-cran-glue 1.3.1-1
ubuntu/r-cran-gtable 0.3.0 dfsg-1
ubuntu/r-cran-gtools 3.8.1-1
ubuntu/r-cran-kernsmooth 2.23-16-1 1
ubuntu/r-cran-labeling 0.3-3
ubuntu/r-cran-lattice 0.20-40-1
ubuntu/r-cran-lazyeval 0.2.2-1
ubuntu/r-cran-lifecycle 0.1.0-2
ubuntu/r-cran-littler 0.3.9-1
ubuntu/r-cran-magrittr 1.5-5
ubuntu/r-cran-mass 7.3-51.5-2
ubuntu/r-cran-matrix 1.2-18-1
ubuntu/r-cran-mgcv 1.8-31-1
ubuntu/r-cran-munsell 0.5.0-1
ubuntu/r-cran-nlme 3.1.144-1
ubuntu/r-cran-nnet 7.3-13-1
ubuntu/r-cran-optparse 1.6.4-1
ubuntu/r-cran-pillar 1.4.3-1
ubuntu/r-cran-pkgconfig 2.0.3-1
ubuntu/r-cran-pkgkitten 0.1.5-1
ubuntu/r-cran-plyr 1.8.5-1
ubuntu/r-cran-r6 2.4.1-1
ubuntu/r-cran-rcolorbrewer 1.1-2-2
ubuntu/r-cran-rcpp 1.0.3-1build1
ubuntu/r-cran-reshape2 1.4.3-2build1
ubuntu/r-cran-rlang 0.4.4-1
ubuntu/r-cran-rpart 4.1-15-2
ubuntu/r-cran-scales 1.1.0-1
ubuntu/r-cran-spatial 7.3-11-2build2
ubuntu/r-cran-stringi 1.4.6-1build1
ubuntu/r-cran-stringr 1.4.0-1
ubuntu/r-cran-survival 3.1-8-1
ubuntu/r-cran-svglite 1.2.3-1
ubuntu/r-cran-systemfonts 0.1.1-1build1
ubuntu/r-cran-tibble 2.1.3-2
ubuntu/r-cran-utf8 1.1.4-1build1
ubuntu/r-cran-vctrs 0.2.3-1
ubuntu/r-cran-viridislite 0.3.0-3
ubuntu/r-cran-withr 2.1.2-3
ubuntu/r-recommended 3.6.3-2
ubuntu/readline-common 8.0-4
ubuntu/sed 4.7-1
ubuntu/sensible-utils 0.0.12 nmu1
ubuntu/sysvinit-utils 2.96-2.1ubuntu1
ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.3
ubuntu/tzdata 2023c-0ubuntu0.20.04.2
ubuntu/ubuntu-keyring 2020.02.11.4
ubuntu/ucf 3.0038 nmu1
ubuntu/unzip 6.0-25ubuntu1.1
ubuntu/util-linux 2.34-0.1ubuntu9.3
ubuntu/x11-common 1:7.7 19ubuntu14
ubuntu/xdg-utils 1.1.3-2ubuntu1.20.04.2
ubuntu/xz-utils 5.2.4-1ubuntu1.1
ubuntu/zip 3.0-11build1
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu1.5
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5