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austinhpatton123/select_inflation_param : latest

Select the best MCL inflation parameter for orthogroup inference

Latest release: almost 2 years ago - 8 downloads - 617 dependencies

JSON

Dependencies

BiocManager 1.30.19
DBI 1.1.3
KernSmooth 2.23-20
Lahman 10.0-1
MASS 7.3-58.1
Matrix 1.5-1
R6 2.5.1
RColorBrewer 1.1-3
RMariaDB 1.2.2
RPostgres 1.4.4
RSQLite 2.2.18
Rcpp 1.0.9
arrow 10.0.0
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.2
bit64 4.0.5
bit 4.0.4
blob 1.2.3
boot 1.3-28
brew 1.0-8
brio 1.1.3
broom 1.0.1
bslib 0.4.1
cachem 1.0.6
callr 3.7.3
cellranger 1.1.0
class 7.3-20
cli 3.4.1
clipr 0.8.0
cluster 2.1.4
codetools 0.2-18
colorspace 2.0-3
commonmark 1.8.1
compiler 4.2.2
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
curl 4.3.3
data.table 1.14.4
datasets 4.2.2
dbplyr 2.2.1
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.30
docopt 0.7.1
downlit 0.4.2
dplyr 1.0.10
dtplyr 1.2.2
duckdb 0.5.1
elbow 0.0.0.9000
ellipsis 0.3.2
evaluate 0.17
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
fontawesome 0.4.0
forcats 0.5.2
foreign 0.8-83
fs 1.5.2
fst 0.9.8
fstcore 0.9.12
gargle 1.2.1
generics 0.1.3
gert 1.9.1
ggplot2 3.3.6
gh 1.3.1
gitcreds 0.1.2
glue 1.6.2
googledrive 2.0.0
googlesheets4 1.0.1
grDevices 4.2.2
graphics 4.2.2
grid 4.2.2
gtable 0.3.1
haven 2.5.1
highr 0.9
hms 1.1.2
htmltools 0.5.3
htmlwidgets 1.5.4
httpuv 1.6.6
httr 1.4.4
ids 1.0.1
ini 0.3.1
isoband 0.2.6
jquerylib 0.1.4
jsonlite 1.8.3
knitr 1.40
labeling 0.4.2
later 1.3.0
lattice 0.20-45
lifecycle 1.0.3
littler 0.3.17
lubridate 1.8.0
magrittr 2.0.3
memoise 2.0.1
methods 4.2.2
mgcv 1.8-41
mime 0.12
miniUI 0.1.1.1
modelr 0.1.9
munsell 0.5.0
nlme 3.1-160
nnet 7.3-18
nycflights13 1.0.2
openssl 2.0.4
parallel 4.2.2
pillar 1.8.1
pkgbuild 1.3.1
pkgconfig 2.0.3
pkgdown 2.0.6
pkgload 1.3.1
plogr 0.2.0
plyr 1.8.8
praise 1.0.0
prettyunits 1.1.1
processx 3.8.0
profvis 0.3.7
progress 1.2.2
promises 1.2.0.1
ps 1.7.2
purrr 0.3.5
ragg 1.2.4
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.3
readxl 1.4.1
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reprex 2.0.2
reshape 0.8.9
rlang 1.0.6
rmarkdown 2.17
roxygen2 7.2.1
rpart 4.1.19
rprojroot 2.0.3
rstudioapi 0.14
rversions 2.1.2
rvest 1.0.3
sass 0.4.2
scales 1.2.1
selectr 0.4-2
sessioninfo 1.2.2
shiny 1.7.3
sourcetools 0.1.7
spatial 7.3-15
splines 4.2.2
stats4 4.2.2
stats 4.2.2
stringi 1.7.8
stringr 1.4.1
survival 3.4-0
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.5
textshaping 0.3.6
tibble 3.1.8
tidyr 1.2.1
tidyselect 1.2.0
tidyverse 1.3.2
tinytex 0.42
tools 4.2.2
translations 4.2.2
tzdb 0.3.0
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.2
utils 4.2.2
uuid 1.1-0
vctrs 0.5.0
viridisLite 0.4.1
vroom 1.6.0
waldo 0.4.0
whisker 0.4
withr 2.5.0
xfun 0.34
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.6
zip 2.2.2

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ubuntu/libzstd-dev 1.4.8 dfsg-3build1
ubuntu/libzstd1 1.4.8 dfsg-3build1
ubuntu/linux-libc-dev 5.15.0-52.58
ubuntu/lmodern 2.004.5-6.1
ubuntu/locales 2.35-0ubuntu3.1
ubuntu/login 1:4.8.1-2ubuntu2
ubuntu/logsave 1.46.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu4
ubuntu/lsb-release 11.1.0ubuntu4
ubuntu/make 4.3-4.1build1
ubuntu/mawk 1.3.4.20200120-3
ubuntu/media-types 7.0.0
ubuntu/mount 2.37.2-4ubuntu3
ubuntu/mysql-common 5.8 1.0.8
ubuntu/ncurses-base 6.3-2
ubuntu/ncurses-bin 6.3-2
ubuntu/netbase 6.3
ubuntu/ocaml-base 4.13.1-3ubuntu1
ubuntu/openjdk-11-jre-headless 11.0.16 8-0ubuntu1~22.04
ubuntu/openssl 3.0.2-0ubuntu1.7
ubuntu/passwd 1:4.8.1-2ubuntu2
ubuntu/perl-base 5.34.0-3ubuntu1.1
ubuntu/perl-modules-5.34 5.34.0-3ubuntu1.1
ubuntu/perl 5.34.0-3ubuntu1.1
ubuntu/pkg-config 0.29.2-1ubuntu3
ubuntu/preview-latex-style 12.2-1ubuntu1
ubuntu/procps 2:3.3.17-6ubuntu2
ubuntu/psmisc 23.4-2build3
ubuntu/pwgen 2.08-2build1
ubuntu/python-pkg-resources 44.1.1-1.2
ubuntu/python-setuptools 44.1.1-1.2
ubuntu/python2-minimal 2.7.18-3
ubuntu/python2.7-minimal 2.7.18-13ubuntu1.1
ubuntu/python2.7 2.7.18-13ubuntu1.1
ubuntu/python2 2.7.18-3
ubuntu/python3-distutils 3.10.6-1~22.04
ubuntu/python3-lib2to3 3.10.6-1~22.04
ubuntu/python3-minimal 3.10.6-1~22.04
ubuntu/python3.10-minimal 3.10.6-1~22.04
ubuntu/python3.10 3.10.6-1~22.04
ubuntu/python3 3.10.6-1~22.04
ubuntu/readline-common 8.1.2-1
ubuntu/rpcsvc-proto 1.4.2-0ubuntu6
ubuntu/rstudio-server 2022.07.2 576
ubuntu/sed 4.8-1ubuntu2
ubuntu/sensible-utils 0.0.17
ubuntu/sudo 1.9.9-1ubuntu2.1
ubuntu/sysvinit-utils 3.01-1ubuntu1
ubuntu/tar 1.34 dfsg-1build3
ubuntu/tcl8.6 8.6.12 dfsg-1build1
ubuntu/tex-common 6.17
ubuntu/tk8.6 8.6.12-1build1
ubuntu/tzdata 2022e-0ubuntu0.22.04.0
ubuntu/ubuntu-keyring 2021.03.26
ubuntu/ucf 3.0043
ubuntu/unixodbc-common 2.3.9-5
ubuntu/unixodbc-dev 2.3.9-5
ubuntu/unzip 6.0-26ubuntu3.1
ubuntu/usrmerge 25ubuntu2
ubuntu/util-linux 2.37.2-4ubuntu3
ubuntu/uuid-dev 2.37.2-4ubuntu3
ubuntu/wget 1.21.2-2ubuntu1
ubuntu/x11-common 1:7.7 23ubuntu2
ubuntu/x11proto-dev 2021.5-1
ubuntu/xfonts-utils 1:7.7 6build2
ubuntu/xorg-sgml-doctools 1:1.11-1.1
ubuntu/xtrans-dev 1.4.0-1
ubuntu/zip 3.0-12build2
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu9.2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2

bash 5.1.16

github.com/evanw/esbuild v0.0.0-20220511215310-7abb7d8496d4
golang.org/x/sys v0.0.0-20210908233432-aa78b53d3365
stdlib 1.18.1

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.1.3
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.1.3