nfcore/smrnaseq : dev

A Docker container for the nf-core/smrnaseq pipeline.

Latest release: over 4 years ago - 55,458 downloads - 320 dependencies

JSON

Dependencies

debian/adduser 3.118
debian/apt 1.8.2.1
debian/base-files 10.3 deb10u6
debian/base-passwd 3.5.46
debian/bash 5.0-4
debian/bsdutils 1:2.33.1-0.1
debian/bzip2 1.0.6-9.2~deb10u1
debian/ca-certificates 20200601~deb10u1
debian/coreutils 8.30-3
debian/dash 0.5.10.2-5
debian/debconf 1.5.71
debian/debian-archive-keyring 2019.1
debian/debianutils 4.8.6.1
debian/diffutils 1:3.7-3
debian/dpkg 1.19.7
debian/e2fsprogs 1.44.5-1 deb10u3
debian/fdisk 2.33.1-0.1
debian/file 1:5.35-4 deb10u1
debian/findutils 4.6.0 git 20190209-2
debian/gcc-8-base 8.3.0-6
debian/git-man 1:2.20.1-2 deb10u3
debian/git 1:2.20.1-2 deb10u3
debian/gpgv 2.2.12-1 deb10u1
debian/grep 3.3-1
debian/gzip 1.9-3
debian/hostname 3.21
debian/init-system-helpers 1.56 nmu1
debian/krb5-locales 1.17-3 deb10u1
debian/less 487-0.1 b1
debian/libacl1 2.2.53-4
debian/libapr1 1.6.5-1 b1
debian/libaprutil1 1.6.1-4
debian/libapt-pkg5.0 1.8.2.1
debian/libatomic1 8.3.0-6
debian/libattr1 1:2.4.48-4
debian/libaudit-common 1:2.8.4-3
debian/libaudit1 1:2.8.4-3
debian/libblkid1 2.33.1-0.1
debian/libbsd0 0.9.1-2
debian/libbz2-1.0 1.0.6-9.2~deb10u1
debian/libc-bin 2.28-10
debian/libc6 2.28-10
debian/libcap-ng0 0.7.9-2
debian/libcom-err2 1.44.5-1 deb10u3
debian/libcurl3-gnutls 7.64.0-4 deb10u1
debian/libdb5.3 5.3.28 dfsg1-0.5
debian/libdebconfclient0 0.249
debian/libedit2 3.1-20181209-1
debian/liberror-perl 0.17027-2
debian/libexpat1 2.2.6-2 deb10u1
debian/libext2fs2 1.44.5-1 deb10u3
debian/libfdisk1 2.33.1-0.1
debian/libffi6 3.2.1-9
debian/libgcc1 1:8.3.0-6
debian/libgcrypt20 1.8.4-5
debian/libgdbm-compat4 1.18.1-4
debian/libgdbm6 1.18.1-4
debian/libglib2.0-0 2.58.3-2 deb10u2
debian/libglib2.0-data 2.58.3-2 deb10u2
debian/libgmp10 2:6.1.2 dfsg-4
debian/libgnutls30 3.6.7-4 deb10u5
debian/libgpg-error0 1.35-1
debian/libgpm2 1.20.7-5
debian/libgssapi-krb5-2 1.17-3 deb10u1
debian/libhogweed4 3.4.1-1
debian/libice6 2:1.0.9-2
debian/libicu63 63.1-6 deb10u1
debian/libidn2-0 2.0.5-1 deb10u1
debian/libk5crypto3 1.17-3 deb10u1
debian/libkeyutils1 1.6-6
debian/libkrb5-3 1.17-3 deb10u1
debian/libkrb5support0 1.17-3 deb10u1
debian/libldap-2.4-2 2.4.47 dfsg-3 deb10u4
debian/libldap-common 2.4.47 dfsg-3 deb10u4
debian/liblz4-1 1.8.3-1
debian/liblzma5 5.2.4-1
debian/libmagic-mgc 1:5.35-4 deb10u1
debian/libmagic1 1:5.35-4 deb10u1
debian/libmount1 2.33.1-0.1
debian/libncurses6 6.1 20181013-2 deb10u2
debian/libncursesw6 6.1 20181013-2 deb10u2
debian/libnettle6 3.4.1-1
debian/libnghttp2-14 1.36.0-2 deb10u1
debian/libp11-kit0 0.23.15-2
debian/libpam-modules-bin 1.3.1-5
debian/libpam-modules 1.3.1-5
debian/libpam-runtime 1.3.1-5
debian/libpam0g 1.3.1-5
debian/libpcre2-8-0 10.32-5
debian/libpcre3 2:8.39-12
debian/libperl5.28 5.28.1-6 deb10u1
debian/libprocps7 2:3.3.15-2
debian/libpsl5 0.20.2-2
debian/libpython-stdlib 2.7.16-1
debian/libpython2-stdlib 2.7.16-1
debian/libpython2.7-minimal 2.7.16-2 deb10u1
debian/libpython2.7-stdlib 2.7.16-2 deb10u1
debian/libreadline7 7.0-5
debian/librtmp1 2.4 20151223.gitfa8646d.1-2
debian/libsasl2-2 2.1.27 dfsg-1 deb10u1
debian/libsasl2-modules-db 2.1.27 dfsg-1 deb10u1
debian/libsasl2-modules 2.1.27 dfsg-1 deb10u1
debian/libseccomp2 2.3.3-4
debian/libselinux1 2.8-1 b1
debian/libsemanage-common 2.8-2
debian/libsemanage1 2.8-2
debian/libsepol1 2.8-1
debian/libserf-1-1 1.3.9-7 b10
debian/libsm6 2:1.2.3-1
debian/libsmartcols1 2.33.1-0.1
debian/libsqlite3-0 3.27.2-3 deb10u1
debian/libss2 1.44.5-1 deb10u3
debian/libssh2-1 1.8.0-2.1
debian/libssl1.1 1.1.1d-0 deb10u3
debian/libstdc 6 8.3.0-6
debian/libsvn1 1.10.4-1 deb10u1
debian/libsystemd0 241-7~deb10u4
debian/libtasn1-6 4.13-3
debian/libtbb2 2018~U6-4
debian/libtinfo6 6.1 20181013-2 deb10u2
debian/libudev1 241-7~deb10u4
debian/libunistring2 0.9.10-1
debian/libutf8proc2 2.3.0-1
debian/libuuid1 2.33.1-0.1
debian/libx11-6 2:1.6.7-1 deb10u1
debian/libx11-data 2:1.6.7-1 deb10u1
debian/libxau6 1:1.0.8-1 b2
debian/libxcb1 1.13.1-2
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1 b2
debian/libxml2 2.9.4 dfsg1-7 deb10u1
debian/libxmuu1 2:1.1.2-2 b3
debian/libxrender1 1:0.9.10-1
debian/libzstd1 1.3.8 dfsg-3
debian/login 1:4.5-1.1
debian/lsb-base 10.2019051400
debian/mawk 1.3.3-17 b3
debian/mercurial-common 4.8.2-1 deb10u1
debian/mercurial 4.8.2-1 deb10u1
debian/mime-support 3.62
debian/mount 2.33.1-0.1
debian/ncurses-base 6.1 20181013-2 deb10u2
debian/ncurses-bin 6.1 20181013-2 deb10u2
debian/netbase 5.6
debian/openssh-client 1:7.9p1-10 deb10u2
debian/openssl 1.1.1d-0 deb10u3
debian/passwd 1:4.5-1.1
debian/patch 2.7.6-3 deb10u1
debian/perl-base 5.28.1-6 deb10u1
debian/perl-modules-5.28 5.28.1-6 deb10u1
debian/perl 5.28.1-6 deb10u1
debian/procps 2:3.3.15-2
debian/psmisc 23.2-1
debian/publicsuffix 20190415.1030-1
debian/python-minimal 2.7.16-1
debian/python2-minimal 2.7.16-1
debian/python2.7-minimal 2.7.16-2 deb10u1
debian/python2.7 2.7.16-2 deb10u1
debian/python2 2.7.16-1
debian/python 2.7.16-1
debian/readline-common 7.0-5
debian/sed 4.7-1
debian/sensible-utils 0.0.12
debian/shared-mime-info 1.10-1
debian/subversion 1.10.4-1 deb10u1
debian/sysvinit-utils 2.93-8
debian/tar 1.30 dfsg-6
debian/tzdata 2020d-0 deb10u1
debian/ucf 3.0038 nmu1
debian/util-linux 2.33.1-0.1
debian/wget 1.20.1-1.1
debian/x11-common 1:7.7 19
debian/xauth 1:1.0.10-1
debian/xdg-user-dirs 0.17-2
debian/xz-utils 5.2.4-1
debian/zlib1g 1:1.2.11.dfsg-1

java 11.0.8-internal 0-adhoc..src
python 3.7.3
python 3.8.5

github.com/ajstarks/svgo v0.0.0-20180226025133-644b8db467af
github.com/biogo/biogo v1.0.3
github.com/biogo/hts v1.2.2
github.com/bsipos/thist v1.0.0
github.com/cespare/xxhash v1.1.0
github.com/cznic/sortutil v0.0.0-20181122101858-f5f958428db8
github.com/dustin/go-humanize v1.0.0
github.com/edsrzf/mmap-go v1.0.0
github.com/fogleman/gg v1.2.1-0.20190220221249-0403632d5b90
github.com/fsnotify/fsnotify v1.4.9
github.com/golang/freetype v0.0.0-20170609003504-e2365dfdc4a0
github.com/iafan/cwalk v0.0.0-20191125092548-dd7f505d2f66
github.com/jung-kurt/gofpdf v1.0.3-0.20190309125859-24315acbbda5
github.com/klauspost/compress v1.11.4
github.com/klauspost/pgzip v1.2.5
github.com/logrusorgru/aurora v2.0.3 incompatible
github.com/mattn/go-colorable v0.1.8
github.com/mattn/go-isatty v0.0.12
github.com/mattn/go-runewidth v0.0.9
github.com/mitchellh/go-homedir v1.1.0
github.com/pkg/errors v0.9.1
github.com/shenwei356/bio v0.1.0
github.com/shenwei356/bpool v0.0.0-20160710042833-f9e0ee4d0403
github.com/shenwei356/breader v0.1.0
github.com/shenwei356/bwt v0.5.1
github.com/shenwei356/go-logging v0.0.0-20171012171522-c6b9702d88ba
github.com/shenwei356/natsort v0.0.0-20190418160752-600d539c017d
github.com/shenwei356/seqkit (devel)
github.com/shenwei356/util v0.3.0
github.com/shenwei356/xopen v0.0.0-20181203091311-f4f16ddd3992
github.com/smallfish/simpleyaml v0.0.0-20170911015856-a32031077861
github.com/spf13/cobra v1.1.3
github.com/spf13/pflag v1.0.5
github.com/tatsushid/go-prettytable v0.0.0-20141013043238-ed2d14c29939
github.com/twotwotwo/sorts v0.0.0-20160814051341-bf5c1f2b8553
golang.org/x/crypto v0.0.0-20190605123033-f99c8df09eb5
golang.org/x/image v0.0.0-20190802002840-cff245a6509b
golang.org/x/sys v0.0.0-20210315160823-c6e025ad8005
gonum.org/v1/plot v0.0.0-20190515093506-e2840ee46a6b
gopkg.in/yaml.v2 v2.4.0
stdlib 1.16.2

cisd-jhdf5:cisd-jhdf5 *
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.6.2
com.google.errorprone:error_prone_annotations 2.2.0
com.google.guava:failureaccess 1.0
com.google.guava:guava 27.0-jre
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.j2objc:j2objc-annotations 1.1
com.opencsv:opencsv 3.8
commons-beanutils:commons-beanutils 1.9.2
commons-cli:commons-cli 1.2
commons-collections:commons-collections 3.2.1
commons-io:commons-io 1.4
commons-lang:commons-lang 2.4
commons-logging:commons-logging 1.1.1
jbzip2:jbzip2 0.9
jrt-fs:jrt-fs 11.0.8-internal
mirtrace:mirtrace *
net.alchim31.maven:yuicompressor-maven-plugin 1.5.1
org.apache.commons:commons-exec 1.3
org.apache.commons:commons-lang3 3.4
org.apache.jackrabbit:jackrabbit-jcr-commons 1.5.0
org.apache.jackrabbit:jackrabbit-webdav 1.5.0
org.apache.maven.doxia:doxia-logging-api 1.1
org.apache.maven.doxia:doxia-sink-api 1.1
org.apache.maven.reporting:maven-reporting-api 2.2.1
org.apache.maven.wagon:wagon-file 1.0-beta-6
org.apache.maven.wagon:wagon-http-lightweight 1.0-beta-6
org.apache.maven.wagon:wagon-http-shared 1.0-beta-6
org.apache.maven.wagon:wagon-http 1.0-beta-6
org.apache.maven.wagon:wagon-provider-api 1.0-beta-6
org.apache.maven.wagon:wagon-ssh-common 1.0-beta-6
org.apache.maven.wagon:wagon-ssh-external 1.0-beta-6
org.apache.maven.wagon:wagon-ssh 1.0-beta-6
org.apache.maven.wagon:wagon-webdav-jackrabbit 1.0-beta-6
org.apache.maven:maven-artifact-manager 2.2.1
org.apache.maven:maven-artifact 2.2.1
org.apache.maven:maven-core 2.2.1
org.apache.maven:maven-error-diagnostics 2.2.1
org.apache.maven:maven-model 2.2.1
org.apache.maven:maven-monitor 2.2.1
org.apache.maven:maven-plugin-api 2.2.1
org.apache.maven:maven-plugin-descriptor 2.2.1
org.apache.maven:maven-plugin-parameter-documenter 2.2.1
org.apache.maven:maven-plugin-registry 2.2.1
org.apache.maven:maven-profile 2.2.1
org.apache.maven:maven-project 2.2.1
org.apache.maven:maven-repository-metadata 2.2.1
org.apache.maven:maven-settings 2.2.1
org.apache.maven:maven-toolchain 1.0
org.codehaus.mojo:animal-sniffer-annotations 1.17
org.codehaus.mojo:exec-maven-plugin 1.5.0
org.codehaus.plexus:plexus-container-default 1.0-alpha-9-stable-1
org.codehaus.plexus:plexus-interactivity-api 1.0-alpha-4
org.codehaus.plexus:plexus-interpolation 1.11
org.codehaus.plexus:plexus-utils 3.0.20
org.slf4j:jcl-over-slf4j 1.5.6
org.slf4j:slf4j-api 1.5.6
org.slf4j:slf4j-jdk14 1.5.6
org.slf4j:slf4j-nop 1.5.3
org.sonatype.plexus:plexus-build-api 0.0.7
org.sonatype.plexus:plexus-cipher 1.4
org.sonatype.plexus:plexus-sec-dispatcher 1.3
sam:sam 1.103
se.scilifelab.mirtrace:miRTrace 1.0.1

mypy 0.770