dhspence/docker-cle-cwl : latest

from mgibio with cwl in there too

Latest release: over 8 years ago - 243 downloads - 1,402 dependencies

JSON

Dependencies

ubuntu/adduser 3.113 nmu3ubuntu4
ubuntu/amap-align 2.2-5
ubuntu/ant-optional 1.9.6-1ubuntu1
ubuntu/ant 1.9.6-1ubuntu1
ubuntu/apache2-bin 2.4.18-2ubuntu3.5
ubuntu/apt-utils 1.2.24
ubuntu/apt 1.2.24
ubuntu/autoconf 2.69-9
ubuntu/automake 1:1.15-4ubuntu1
ubuntu/autotools-dev 20150820.1
ubuntu/base-files 9.4ubuntu4.5
ubuntu/base-passwd 3.5.39
ubuntu/bash 4.3-14ubuntu1.2
ubuntu/bedtools 2.25.0-1
ubuntu/bind9-host 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/binutils 2.26.1-1ubuntu1~16.04.4
ubuntu/bioperl-run 1.6.9-3
ubuntu/bioperl 1.6.924-3
ubuntu/blast2 1:2.2.26.20120620-10
ubuntu/bowtie 1.1.2-3
ubuntu/bsdmainutils 9.0.6ubuntu3
ubuntu/bsdutils 1:2.27.1-6ubuntu3.3
ubuntu/build-essential 12.1ubuntu2
ubuntu/bwa 0.7.12-5
ubuntu/bzip2-doc 1.0.6-8
ubuntu/bzip2 1.0.6-8
ubuntu/ca-certificates-java 20160321
ubuntu/ca-certificates 20160104ubuntu1
ubuntu/cdbs 0.4.130ubuntu2
ubuntu/clustalo 1.2.1-2
ubuntu/clustalw 2.1 lgpl-4
ubuntu/cmake-data 3.5.1-1ubuntu3
ubuntu/cmake 3.5.1-1ubuntu3
ubuntu/coreutils 8.25-2ubuntu3~16.04
ubuntu/cpp-5 5.4.0-6ubuntu1~16.04.4
ubuntu/cpp 4:5.3.1-1ubuntu1
ubuntu/cracklib-runtime 2.9.2-1build2
ubuntu/curl 7.47.0-1ubuntu2.2
ubuntu/dash 0.5.8-2.1ubuntu2
ubuntu/dbus 1.10.6-1ubuntu3.3
ubuntu/debconf 1.5.58ubuntu1
ubuntu/debhelper 9.20160115ubuntu3
ubuntu/debianutils 4.7
ubuntu/default-jdk-headless 2:1.8-56ubuntu2
ubuntu/default-jdk 2:1.8-56ubuntu2
ubuntu/default-jre-headless 2:1.8-56ubuntu2
ubuntu/default-jre 2:1.8-56ubuntu2
ubuntu/dh-strip-nondeterminism 0.015-1
ubuntu/dh-translations 129
ubuntu/dialign-tx-data 1.0.2-8
ubuntu/dialign-tx 1.0.2-8
ubuntu/dialign 2.2.1-7
ubuntu/diffutils 1:3.3-3
ubuntu/dpkg-dev 1.18.4ubuntu1.2
ubuntu/dpkg 1.18.4ubuntu1.2
ubuntu/e2fslibs 1.42.13-1ubuntu1
ubuntu/e2fsprogs 1.42.13-1ubuntu1
ubuntu/emboss-data 6.6.0 dfsg-3build1
ubuntu/emboss-lib 6.6.0 dfsg-3build1
ubuntu/emboss 6.6.0 dfsg-3build1
ubuntu/exonerate 2.2.0-7
ubuntu/fakeroot 1.20.2-1ubuntu1
ubuntu/file 1:5.25-2ubuntu1
ubuntu/findutils 4.6.0 git 20160126-2
ubuntu/fontconfig-config 2.11.94-0ubuntu1.1
ubuntu/fontconfig 2.11.94-0ubuntu1.1
ubuntu/fonts-dejavu-core 2.35-1
ubuntu/fonts-dejavu-extra 2.35-1
ubuntu/fonts-lato 2.0-1
ubuntu/fonts-liberation 1.07.4-1
ubuntu/g -5 5.4.0-6ubuntu1~16.04.4
ubuntu/g 4:5.3.1-1ubuntu1
ubuntu/gcc-5-base 5.4.0-6ubuntu1~16.04.4
ubuntu/gcc-5-multilib 5.4.0-6ubuntu1~16.04.4
ubuntu/gcc-5 5.4.0-6ubuntu1~16.04.4
ubuntu/gcc-6-base 6.0.1-0ubuntu1
ubuntu/gcc-multilib 4:5.3.1-1ubuntu1
ubuntu/gcc 4:5.3.1-1ubuntu1
ubuntu/geoip-database 20160408-1
ubuntu/gettext-base 0.19.7-2ubuntu3
ubuntu/gettext 0.19.7-2ubuntu3
ubuntu/gfortran-5 5.4.0-6ubuntu1~16.04.4
ubuntu/gfortran 4:5.3.1-1ubuntu1
ubuntu/ghostscript 9.18~dfsg~0-0ubuntu2.7
ubuntu/git-man 1:2.7.4-0ubuntu1.2
ubuntu/git 1:2.7.4-0ubuntu1.2
ubuntu/gnupg 1.4.20-1ubuntu3.1
ubuntu/gpgv 1.4.20-1ubuntu3.1
ubuntu/graphviz 2.38.0-12ubuntu2.1
ubuntu/grep 2.25-1~16.04.1
ubuntu/groff-base 1.22.3-7
ubuntu/gsfonts 1:8.11 urwcyr1.0.7~pre44-4.2ubuntu1
ubuntu/gzip 1.6-4ubuntu1
ubuntu/hicolor-icon-theme 0.15-0ubuntu1
ubuntu/hmmer 3.1b2-2
ubuntu/hostname 3.16ubuntu2
ubuntu/ifupdown 0.8.10ubuntu1.2
ubuntu/infernal 1.1.1-3
ubuntu/init-system-helpers 1.29ubuntu4
ubuntu/init 1.29ubuntu4
ubuntu/initscripts 2.88dsf-59.3ubuntu2
ubuntu/insserv 1.14.0-5ubuntu3
ubuntu/intltool-debian 0.35.0 20060710.4
ubuntu/intltool 0.51.0-2
ubuntu/iproute2 4.3.0-1ubuntu3.16.04.1
ubuntu/isc-dhcp-client 4.3.3-5ubuntu12.7
ubuntu/isc-dhcp-common 4.3.3-5ubuntu12.7
ubuntu/java-common 0.56ubuntu2
ubuntu/javascript-common 11
ubuntu/kalign 1:2.03 20110620-2
ubuntu/krb5-locales 1.13.2 dfsg-5ubuntu2
ubuntu/ldap-utils 2.4.42 dfsg-2ubuntu3.2
ubuntu/less 481-2.1ubuntu0.2
ubuntu/lib32asan2 5.4.0-6ubuntu1~16.04.4
ubuntu/lib32atomic1 5.4.0-6ubuntu1~16.04.4
ubuntu/lib32cilkrts5 5.4.0-6ubuntu1~16.04.4
ubuntu/lib32gcc-5-dev 5.4.0-6ubuntu1~16.04.4
ubuntu/lib32gcc1 1:6.0.1-0ubuntu1
ubuntu/lib32gomp1 5.4.0-6ubuntu1~16.04.4
ubuntu/lib32itm1 5.4.0-6ubuntu1~16.04.4
ubuntu/lib32mpx0 5.4.0-6ubuntu1~16.04.4
ubuntu/lib32ncurses5 6.0 20160213-1ubuntu1
ubuntu/lib32quadmath0 5.4.0-6ubuntu1~16.04.4
ubuntu/lib32stdc 6 5.4.0-6ubuntu1~16.04.4
ubuntu/lib32tinfo5 6.0 20160213-1ubuntu1
ubuntu/lib32ubsan0 5.4.0-6ubuntu1~16.04.4
ubuntu/libace-perl 1.92-4
ubuntu/libacl1 2.2.52-3
ubuntu/libalgorithm-diff-perl 1.19.03-1
ubuntu/libalgorithm-diff-xs-perl 0.04-4build1
ubuntu/libalgorithm-merge-perl 0.08-3
ubuntu/libalgorithm-munkres-perl 0.08-3
ubuntu/libapache-dbi-perl 1.12-1
ubuntu/libapache2-mod-perl2 2.0.9-4ubuntu1
ubuntu/libapache2-reload-perl 0.13-1
ubuntu/libapparmor1 2.10.95-0ubuntu2.7
ubuntu/libapr1 1.5.2-3
ubuntu/libaprutil1-dbd-sqlite3 1.5.4-1build1
ubuntu/libaprutil1-ldap 1.5.4-1build1
ubuntu/libaprutil1 1.5.4-1build1
ubuntu/libapt-inst2.0 1.2.24
ubuntu/libapt-pkg5.0 1.2.24
ubuntu/libarchive-extract-perl 0.76-1
ubuntu/libarchive-zip-perl 1.56-2
ubuntu/libarchive13 3.1.2-11ubuntu0.16.04.3
ubuntu/libargtable2-0 12-1.1
ubuntu/libarray-compare-perl 2.11-1
ubuntu/libasan2 5.4.0-6ubuntu1~16.04.4
ubuntu/libasn1-8-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libasound2-data 1.1.0-0ubuntu1
ubuntu/libasound2 1.1.0-0ubuntu1
ubuntu/libasprintf-dev 0.19.7-2ubuntu3
ubuntu/libasprintf0v5 0.19.7-2ubuntu3
ubuntu/libasyncns0 0.8-5build1
ubuntu/libatk1.0-0 2.18.0-1
ubuntu/libatk1.0-data 2.18.0-1
ubuntu/libatm1 1:2.5.1-1.5
ubuntu/libatomic1 5.4.0-6ubuntu1~16.04.4
ubuntu/libattr1 1:2.4.47-2
ubuntu/libaudit-common 1:2.4.5-1ubuntu2
ubuntu/libaudit1 1:2.4.5-1ubuntu2
ubuntu/libauthen-sasl-perl 2.1600-1
ubuntu/libavahi-client3 0.6.32~rc dfsg-1ubuntu2
ubuntu/libavahi-common-data 0.6.32~rc dfsg-1ubuntu2
ubuntu/libavahi-common3 0.6.32~rc dfsg-1ubuntu2
ubuntu/libb-hooks-op-check-perl 0.19-2build2
ubuntu/libbareword-filehandles-perl 0.003-1build3
ubuntu/libbasicobjects0 0.5.0-1
ubuntu/libbind9-140 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libbio-asn1-entrezgene-perl 1.700-1
ubuntu/libbio-perl-perl 1.6.924-3
ubuntu/libbio-perl-run-perl 1.6.9-3
ubuntu/libbit-vector-perl 7.4-1build1
ubuntu/libblas-common 3.6.0-2ubuntu2
ubuntu/libblas-dev 3.6.0-2ubuntu2
ubuntu/libblas3 3.6.0-2ubuntu2
ubuntu/libblkid1 2.27.1-6ubuntu3.3
ubuntu/libbsd-resource-perl 1.2909-1build1
ubuntu/libbsd0 0.8.2-1
ubuntu/libbz2-1.0 1.0.6-8
ubuntu/libbz2-dev 1.0.6-8
ubuntu/libc-ares2 1.10.0-3ubuntu0.2
ubuntu/libc-bin 2.23-0ubuntu9
ubuntu/libc-dev-bin 2.23-0ubuntu9
ubuntu/libc6-dev-i386 2.23-0ubuntu9
ubuntu/libc6-dev-x32 2.23-0ubuntu9
ubuntu/libc6-dev 2.23-0ubuntu9
ubuntu/libc6-i386 2.23-0ubuntu9
ubuntu/libc6-x32 2.23-0ubuntu9
ubuntu/libc6 2.23-0ubuntu9
ubuntu/libcache-cache-perl 1.08-2
ubuntu/libcairo2 1.14.6-1
ubuntu/libcap-ng0 0.7.7-1
ubuntu/libcap2-bin 1:2.24-12
ubuntu/libcap2 1:2.24-12
ubuntu/libcarp-clan-perl 6.04-2
ubuntu/libcc1-0 5.4.0-6ubuntu1~16.04.4
ubuntu/libcdt5 2.38.0-12ubuntu2.1
ubuntu/libcgi-fast-perl 1:2.10-1
ubuntu/libcgi-pm-perl 4.26-1
ubuntu/libcgraph6 2.38.0-12ubuntu2.1
ubuntu/libcilkrts5 5.4.0-6ubuntu1~16.04.4
ubuntu/libclass-inspector-perl 1.28-1
ubuntu/libclass-method-modifiers-perl 2.11-1
ubuntu/libclass-xsaccessor-perl 1.19-2build4
ubuntu/libclone-perl 0.38-1build1
ubuntu/libcollection4 0.5.0-1
ubuntu/libcomerr2 1.42.13-1ubuntu1
ubuntu/libconvert-binary-c-perl 0.78-1
ubuntu/libconvert-binhex-perl 1.125-1
ubuntu/libcrack2 2.9.2-1build2
ubuntu/libcroco3 0.6.11-1
ubuntu/libcrypt-rc4-perl 2.02-2
ubuntu/libcryptsetup4 2:1.6.6-5ubuntu2.1
ubuntu/libcups2 2.1.3-4ubuntu0.3
ubuntu/libcupsfilters1 1.8.3-2ubuntu3.1
ubuntu/libcupsimage2 2.1.3-4ubuntu0.3
ubuntu/libcurl3-gnutls 7.47.0-1ubuntu2.2
ubuntu/libcurl3 7.47.0-1ubuntu2.2
ubuntu/libdata-stag-perl 0.14-1ubuntu2
ubuntu/libdate-calc-perl 6.4-1
ubuntu/libdate-calc-xs-perl 6.4-1build1
ubuntu/libdate-manip-perl 6.52-1
ubuntu/libdatrie1 0.2.10-2
ubuntu/libdb5.3 5.3.28-11
ubuntu/libdbd-mysql-perl 4.033-1ubuntu0.1
ubuntu/libdbd-pg-perl 3.5.3-1build1
ubuntu/libdbd-sqlite3-perl 1.50-1
ubuntu/libdbi-perl 1.634-1build1
ubuntu/libdbus-1-3 1.10.6-1ubuntu3.3
ubuntu/libdebconfclient0 0.198ubuntu1
ubuntu/libdevel-caller-perl 2.06-1build3
ubuntu/libdevel-globaldestruction-perl 0.13-1
ubuntu/libdevel-lexalias-perl 0.05-1build3
ubuntu/libdevel-symdump-perl 2.15-3
ubuntu/libdevmapper1.02.1 2:1.02.110-1ubuntu10
ubuntu/libdhash1 0.5.0-1
ubuntu/libdigest-perl-md5-perl 1.9-1
ubuntu/libdns-export162 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libdns162 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libdpkg-perl 1.18.4ubuntu1.2
ubuntu/libdrm-amdgpu1 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm-intel1 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm-nouveau2 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm-radeon1 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm2 2.4.76-1~ubuntu16.04.1
ubuntu/libedit2 3.1-20150325-1ubuntu2
ubuntu/libelf1 0.165-3ubuntu1
ubuntu/libencode-locale-perl 1.05-1
ubuntu/liberror-perl 0.17-1.2
ubuntu/libexpat1-dev 2.1.0-7ubuntu0.16.04.3
ubuntu/libexpat1 2.1.0-7ubuntu0.16.04.3
ubuntu/libexporter-tiny-perl 0.042-1
ubuntu/libfakeroot 1.20.2-1ubuntu1
ubuntu/libfcgi-perl 0.77-1build1
ubuntu/libfdisk1 2.27.1-6ubuntu3.3
ubuntu/libffi6 3.2.1-4
ubuntu/libfile-basedir-perl 0.07-1
ubuntu/libfile-copy-recursive-perl 0.38-1
ubuntu/libfile-desktopentry-perl 0.22-1
ubuntu/libfile-fcntllock-perl 0.22-3
ubuntu/libfile-listing-perl 6.04-1
ubuntu/libfile-mimeinfo-perl 0.27-1
ubuntu/libfile-slurp-tiny-perl 0.003-1
ubuntu/libfile-stripnondeterminism-perl 0.015-1
ubuntu/libflac8 1.3.1-4
ubuntu/libfont-afm-perl 1.20-1
ubuntu/libfontconfig1 2.11.94-0ubuntu1.1
ubuntu/libfontenc1 1:1.1.3-1
ubuntu/libfreetype6 2.6.1-0.1ubuntu2.3
ubuntu/libfreezethaw-perl 0.5001-1
ubuntu/libgcc-5-dev 5.4.0-6ubuntu1~16.04.4
ubuntu/libgcc1 1:6.0.1-0ubuntu1
ubuntu/libgcrypt20 1.6.5-2ubuntu0.3
ubuntu/libgd-perl 2.53-2.1
ubuntu/libgd3 2.1.1-4ubuntu0.16.04.8
ubuntu/libgdbm3 1.8.3-13.1
ubuntu/libgdk-pixbuf2.0-0 2.32.2-1ubuntu1.3
ubuntu/libgdk-pixbuf2.0-common 2.32.2-1ubuntu1.3
ubuntu/libgeoip1 1.6.9-1
ubuntu/libgettextpo-dev 0.19.7-2ubuntu3
ubuntu/libgettextpo0 0.19.7-2ubuntu3
ubuntu/libgfortran-5-dev 5.4.0-6ubuntu1~16.04.4
ubuntu/libgfortran3 5.4.0-6ubuntu1~16.04.4
ubuntu/libgif7 5.1.4-0.3~16.04
ubuntu/libgl1-mesa-dri 17.0.7-0ubuntu0.16.04.1
ubuntu/libgl1-mesa-glx 17.0.7-0ubuntu0.16.04.1
ubuntu/libglapi-mesa 17.0.7-0ubuntu0.16.04.1
ubuntu/libglib2.0-0 2.48.2-0ubuntu1
ubuntu/libglib2.0-data 2.48.2-0ubuntu1
ubuntu/libgmp10 2:6.1.0 dfsg-2
ubuntu/libgnutls30 3.4.10-4ubuntu1.3
ubuntu/libgomp1 5.4.0-6ubuntu1~16.04.4
ubuntu/libgpg-error0 1.21-2ubuntu1
ubuntu/libgraph-perl 1:0.96-2
ubuntu/libgraphite2-3 1.3.10-0ubuntu0.16.04.1
ubuntu/libgraphviz-perl 2.20-1
ubuntu/libgs9-common 9.18~dfsg~0-0ubuntu2.7
ubuntu/libgs9 9.18~dfsg~0-0ubuntu2.7
ubuntu/libgssapi-krb5-2 1.13.2 dfsg-5ubuntu2
ubuntu/libgssapi3-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libgtk2.0-0 2.24.30-1ubuntu1.16.04.2
ubuntu/libgtk2.0-bin 2.24.30-1ubuntu1.16.04.2
ubuntu/libgtk2.0-common 2.24.30-1ubuntu1.16.04.2
ubuntu/libgvc6 2.38.0-12ubuntu2.1
ubuntu/libgvpr2 2.38.0-12ubuntu2.1
ubuntu/libharfbuzz0b 1.0.1-1ubuntu0.1
ubuntu/libhcrypto4-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libheimbase1-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libheimntlm0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libhmsbeagle1v5 2.1.2 20150609-1.1
ubuntu/libhogweed4 3.2-1ubuntu0.16.04.1
ubuntu/libhpdf-2.2.1 2.2.1-1.1
ubuntu/libhtml-form-perl 6.03-1
ubuntu/libhtml-format-perl 2.11-2
ubuntu/libhtml-parser-perl 3.72-1
ubuntu/libhtml-tableextract-perl 2.13-1
ubuntu/libhtml-tagset-perl 3.20-2
ubuntu/libhtml-tree-perl 5.03-2
ubuntu/libhttp-cookies-perl 6.01-1
ubuntu/libhttp-daemon-perl 6.01-1
ubuntu/libhttp-date-perl 6.02-1
ubuntu/libhttp-message-perl 6.11-1
ubuntu/libhttp-negotiate-perl 6.00-2
ubuntu/libhx509-5-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libice-dev 2:1.0.9-1
ubuntu/libice6 2:1.0.9-1
ubuntu/libicu55 55.1-7ubuntu0.2
ubuntu/libidn11 1.32-3ubuntu1.1
ubuntu/libijs-0.35 0.35-12
ubuntu/libimport-into-perl 1.002005-1
ubuntu/libindirect-perl 0.36-1build1
ubuntu/libini-config5 0.5.0-1
ubuntu/libio-html-perl 1.001-1
ubuntu/libio-pty-perl 1:1.08-1.1build1
ubuntu/libio-sessiondata-perl 1.03-1
ubuntu/libio-socket-ssl-perl 2.024-1
ubuntu/libio-string-perl 1.08-3
ubuntu/libio-stringy-perl 2.110-5
ubuntu/libipa-hbac0 1.13.4-1ubuntu1.7
ubuntu/libipc-run-perl 0.94-1
ubuntu/libipc-sharelite-perl 0.17-3build3
ubuntu/libipc-system-simple-perl 1.25-3
ubuntu/libisc-export160 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libisc160 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libisccc140 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libisccfg140 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libisl15 0.16.1-1
ubuntu/libitm1 5.4.0-6ubuntu1~16.04.4
ubuntu/libjbig0 2.1-3.1
ubuntu/libjbig2dec0 0.12 20150918-1ubuntu0.1
ubuntu/libjcode-pm-perl 2.06-1
ubuntu/libjpeg-dev 8c-2ubuntu8
ubuntu/libjpeg-turbo8-dev 1.4.2-0ubuntu3
ubuntu/libjpeg-turbo8 1.4.2-0ubuntu3
ubuntu/libjpeg8-dev 8c-2ubuntu8
ubuntu/libjpeg8 8c-2ubuntu8
ubuntu/libjs-jquery 1.11.3 dfsg-4
ubuntu/libjson-c2 0.11-4ubuntu2
ubuntu/libjsoncpp1 1.7.2-1
ubuntu/libk5crypto3 1.13.2 dfsg-5ubuntu2
ubuntu/libkeyutils1 1.5.9-8ubuntu1
ubuntu/libkmod2 22-1ubuntu5
ubuntu/libkrb5-26-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libkrb5-3 1.13.2 dfsg-5ubuntu2
ubuntu/libkrb5support0 1.13.2 dfsg-5ubuntu2
ubuntu/liblapack-dev 3.6.0-2ubuntu2
ubuntu/liblapack3 3.6.0-2ubuntu2
ubuntu/liblcms2-2 2.6-3ubuntu2
ubuntu/libldap-2.4-2 2.4.42 dfsg-2ubuntu3.2
ubuntu/libldb1 2:1.1.24-1ubuntu3
ubuntu/liblexical-sealrequirehints-perl 0.009-1build1
ubuntu/liblist-moreutils-perl 0.413-1build1
ubuntu/libllvm4.0 1:4.0-1ubuntu1~16.04.2
ubuntu/liblsan0 5.4.0-6ubuntu1~16.04.4
ubuntu/libltdl7 2.4.6-0.1
ubuntu/liblua5.1-0 5.1.5-8ubuntu1
ubuntu/liblwp-mediatypes-perl 6.02-1
ubuntu/liblwp-protocol-https-perl 6.06-2
ubuntu/liblwres141 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/liblz4-1 0.0~r131-2ubuntu2
ubuntu/liblzma-dev 5.1.1alpha 20120614-2ubuntu2
ubuntu/liblzma5 5.1.1alpha 20120614-2ubuntu2
ubuntu/liblzo2-2 2.08-1.2
ubuntu/libmagic1 1:5.25-2ubuntu1
ubuntu/libmail-sendmail-perl 0.79.16-1
ubuntu/libmailtools-perl 2.13-1
ubuntu/libmath-derivative-perl 0.04-2
ubuntu/libmath-spline-perl 0.02-1
ubuntu/libmime-tools-perl 5.507-1
ubuntu/libmldbm-perl 2.05-2
ubuntu/libmnl0 1.0.3-5
ubuntu/libmodule-runtime-perl 0.014-2
ubuntu/libmoo-perl 2.000002-1
ubuntu/libmount1 2.27.1-6ubuntu3.3
ubuntu/libmpc3 1.0.3-1
ubuntu/libmpfr4 3.1.4-1
ubuntu/libmpx0 5.4.0-6ubuntu1~16.04.4
ubuntu/libmultidimensional-perl 0.010-1build3
ubuntu/libmysqlclient20 5.7.19-0ubuntu0.16.04.1
ubuntu/libncbi6 6.1.20120620-10
ubuntu/libncurses5-dev 6.0 20160213-1ubuntu1
ubuntu/libncurses5 6.0 20160213-1ubuntu1
ubuntu/libncursesw5 6.0 20160213-1ubuntu1
ubuntu/libnet-dbus-perl 1.1.0-3build1
ubuntu/libnet-http-perl 6.09-1
ubuntu/libnet-smtp-ssl-perl 1.03-1
ubuntu/libnet-ssleay-perl 1.72-1build1
ubuntu/libnettle6 3.2-1ubuntu0.16.04.1
ubuntu/libnfsidmap2 0.25-5
ubuntu/libxml-perl 0.08-2
ubuntu/libnl-3-200 3.2.27-1ubuntu0.16.04.1
ubuntu/libnl-route-3-200 3.2.27-1ubuntu0.16.04.1
ubuntu/libnspr4 2:4.13.1-0ubuntu0.16.04.1
ubuntu/libnss-sss 1.13.4-1ubuntu1.7
ubuntu/libnss3-nssdb 2:3.28.4-0ubuntu0.16.04.2
ubuntu/libnss3 2:3.28.4-0ubuntu0.16.04.2
ubuntu/libogg0 1.3.2-1
ubuntu/libole-storage-lite-perl 0.19-1
ubuntu/libossp-uuid-perl 1.6.2-1.5build2
ubuntu/libossp-uuid16 1.6.2-1.5build2
ubuntu/libp11-kit0 0.23.2-5~ubuntu16.04.1
ubuntu/libpadwalker-perl 2.2-1build1
ubuntu/libpam-modules-bin 1.1.8-3.2ubuntu2
ubuntu/libpam-modules 1.1.8-3.2ubuntu2
ubuntu/libpam-pwquality 1.3.0-0ubuntu1
ubuntu/libpam-runtime 1.1.8-3.2ubuntu2
ubuntu/libpam-sss 1.13.4-1ubuntu1.7
ubuntu/libpam0g 1.1.8-3.2ubuntu2
ubuntu/libpango-1.0-0 1.38.1-1
ubuntu/libpangocairo-1.0-0 1.38.1-1
ubuntu/libpangoft2-1.0-0 1.38.1-1
ubuntu/libpaper-utils 1.1.24 nmu4ubuntu1
ubuntu/libpaper1 1.1.24 nmu4ubuntu1
ubuntu/libparams-classify-perl 0.013-5build1
ubuntu/libparse-recdescent-perl 1.967013 dfsg-1
ubuntu/libpath-utils1 0.5.0-1
ubuntu/libpathplan4 2.38.0-12ubuntu2.1
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ubuntu/libxcb-shm0 1.11.1-1ubuntu1
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ubuntu/libxcursor1 1:1.1.14-1
ubuntu/libxdamage1 1:1.1.4-2
ubuntu/libxdmcp-dev 1:1.1.2-1.1
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ubuntu/libxft2 2.3.2-1
ubuntu/libxi6 2:1.7.6-1
ubuntu/libxinerama1 2:1.1.3-1
ubuntu/libxml-dom-perl 1.44-2
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ubuntu/libxml-namespacesupport-perl 1.11-1
ubuntu/libxml-parser-perl 2.44-1build1
ubuntu/libxml-sax-base-perl 1.07-1
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ubuntu/libxml-writer-perl 0.625-1
ubuntu/libxml-xpath-perl 1.30-1
ubuntu/libxml-xpathengine-perl 0.13-1
ubuntu/libxml2 2.9.3 dfsg1-1ubuntu0.3
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ubuntu/libxpm4 1:3.5.11-1ubuntu0.16.04.1
ubuntu/libxrandr2 2:1.5.0-1
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ubuntu/openjdk-8-jre-headless 8u131-b11-2ubuntu1.16.04.3
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ubuntu/proda 1.0-9
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ubuntu/python-dev 2.7.11-1
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ubuntu/r-cran-mgcv 1.8-11-1
ubuntu/r-cran-nlme 3.1.124-1
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ubuntu/r-recommended 3.2.3-4
ubuntu/rake 10.5.0-2
ubuntu/readline-common 6.3-8ubuntu2
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ubuntu/rsync 3.1.1-3ubuntu1
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ubuntu/ruby-power-assert 0.2.7-1
ubuntu/ruby-test-unit 3.1.7-2
ubuntu/ruby2.3 2.3.1-2~16.04.2
ubuntu/ruby 1:2.3.0 1
ubuntu/rubygems-integration 1.10
ubuntu/samba-libs 2:4.3.11 dfsg-0ubuntu0.16.04.11
ubuntu/samtools 0.1.19-1ubuntu1
ubuntu/sed 4.2.2-7
ubuntu/sensible-utils 0.0.9
ubuntu/sgml-base 1.26 nmu4ubuntu1
ubuntu/shared-mime-info 1.5-2ubuntu0.1
ubuntu/sim4 0.0.20121010-2
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ubuntu/sssd-krb5 1.13.4-1ubuntu1.7
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ubuntu/sssd-proxy 1.13.4-1ubuntu1.7
ubuntu/sssd 1.13.4-1ubuntu1.7
ubuntu/systemd-sysv 229-4ubuntu19
ubuntu/systemd 229-4ubuntu19
ubuntu/sysv-rc 2.88dsf-59.3ubuntu2
ubuntu/sysvinit-utils 2.88dsf-59.3ubuntu2
ubuntu/t-coffee 11.00.8cbe486-2
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ubuntu/tcpd 7.6.q-25
ubuntu/tigr-glimmer 3.02-4
ubuntu/tm-align 20150914 dfsg-1
ubuntu/tzdata 2016j-0ubuntu0.16.04
ubuntu/ubuntu-keyring 2012.05.19
ubuntu/ucf 3.0036
ubuntu/unzip 6.0-20ubuntu1
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ubuntu/wamerican 7.1-1
ubuntu/wget 1.17.1-1ubuntu1.2
ubuntu/wise-data 2.4.1-17
ubuntu/wise 2.4.1-17
ubuntu/x11-common 1:7.7 13ubuntu3
ubuntu/x11-utils 7.7 3
ubuntu/x11-xserver-utils 7.7 7
ubuntu/x11proto-core-dev 7.0.31-1~ubuntu16.04.1
ubuntu/x11proto-input-dev 2.3.1-1
ubuntu/x11proto-kb-dev 1.0.7-0ubuntu1
ubuntu/xauth 1:1.0.9-1ubuntu2
ubuntu/xdg-user-dirs 0.15-2ubuntu6
ubuntu/xdg-utils 1.1.1-1ubuntu1.16.04.1
ubuntu/xml-core 0.13 nmu2
ubuntu/xorg-sgml-doctools 1:1.11-1
ubuntu/xtrans-dev 1.3.5-1
ubuntu/xz-utils 5.1.1alpha 20120614-2ubuntu2
ubuntu/zip 3.0-11
ubuntu/zlib1g-dev 1:1.2.8.dfsg-2ubuntu4.1
ubuntu/zlib1g 1:1.2.8.dfsg-2ubuntu4.1

bigdecimal 1.2.8
did_you_mean 1.0.0
io-console 0.4.5
json 1.8.3
minitest 5.8.4
net-telnet 0.1.1
power_assert 0.2.7
psych 2.0.17
rake 10.5.0
rdoc 4.2.1
test-unit 3.1.7

US_export_policy:US_export_policy *
antlr:antlr 2.7.7
aopalliance:aopalliance 1.0
asm-analysis:asm-analysis 3.3.1
asm-analysis:asm-analysis 4.0
asm-commons:asm-commons 3.3.1
asm-commons:asm-commons 4.0
asm-tree:asm-tree 3.3.1
asm-tree:asm-tree 4.0
asm-util:asm-util 3.3.1
asm-util:asm-util 4.0
asm-xml:asm-xml 3.3.1
asm:asm 3.3.1
asm:asm 4.0
backport-util-concurrent:backport-util-concurrent 3.1
bndlib:bndlib 2.4.0
bsh:bsh 2.0b4
ch.qos.logback:logback-classic 1.0.13
ch.qos.logback:logback-core 1.0.13
charsets:charsets *
cldrdata:cldrdata *
cofoja:cofoja 1.2-20140817
colt:colt 1.2.0
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com.amazonaws:aws-java-sdk-kms 1.9.19
com.amazonaws:aws-java-sdk-s3 1.9.19
com.beust:jcommander 1.12
com.beust:jcommander 1.27
com.beust:jcommander 1.48
com.esotericsoftware.kryo:kryo 2.20
com.esotericsoftware.minlog:minlog 1.2
com.esotericsoftware.reflectasm:reflectasm 1.07
com.fasterxml.jackson.core:jackson-annotations 2.3.2
com.fasterxml.jackson.core:jackson-core 2.1.3
com.fasterxml.jackson.core:jackson-core 2.3.2
com.fasterxml.jackson.core:jackson-databind 2.3.2
com.github.broadinstitute:picard 2.4.1
com.google.api-client:google-api-client-java6 1.19.0
com.google.api-client:google-api-client 1.19.0
com.google.apis:google-api-services-genomics v1beta2-rev9-1.19.0
com.google.caliper:caliper 0.5-rc1
com.google.cloud.genomics:gatk-tools-java 1.1
com.google.cloud.genomics:google-genomics-utils v1beta2-0.19
com.google.code.java-allocation-instrumenter:java-allocation-instrumenter 2.0
com.google.code.sortpom:maven-sortpom-plugin 2.2
com.google.code.sortpom:maven-sortpom-sorter 2.2
com.google.collections:google-collections 1.0
com.google.gson:gson 1.7.1
com.google.gson:gson 2.2.2
com.google.gson:gson 2.2.4
com.google.guava:guava-jdk5 17.0
com.google.guava:guava 11.0.2
com.google.guava:guava 15.0
com.google.guava:guava 18.0
com.google.guava:guava 19.0
com.google.http-client:google-http-client-jackson2 1.19.0
com.google.http-client:google-http-client 1.19.0
com.google.inject:guice 3.0
com.google.oauth-client:google-oauth-client-java6 1.19.0
com.google.oauth-client:google-oauth-client-jetty 1.19.0
com.google.oauth-client:google-oauth-client 1.19.0
com.googlecode.jatl:jatl 0.2.2
com.googlecode.javaewah:JavaEWAH 0.7.9
com.jamesmurty.utils:java-xmlbuilder 0.4
com.jcraft:jsch 0.1.53
com.lukegb.mojo:gitdescribe-maven-plugin 2.0
com.pyx4j:maven-junction-plugin 1.0.3
com.sun.jna:jna 3.2.7
com.sun:activation 1.1
com.sun:jce 1.8.0_131
com.sun:mail 1.4
com.sun:sunec 1.8.0_131
com.sun:sunjce_provider 1.8.0_131
com.sun:sunpkcs11 1.8.0_131
com.thoughtworks.qdox:qdox 1.12.1
com.tonicsystems.jarjar.Main:jarjar 1.3
commons-beanutils:commons-beanutils 1.8.0
commons-cli:commons-cli 1.2
commons-codec:commons-codec 1.2
commons-codec:commons-codec 1.3
commons-codec:commons-codec 1.4
commons-codec:commons-codec 1.6
commons-collections:commons-collections 3.2
commons-collections:commons-collections 3.2.1
commons-collections:commons-collections 3.2.2
commons-io:commons-io 1.2
commons-io:commons-io 1.4
commons-io:commons-io 2.1
commons-io:commons-io 2.2
commons-io:commons-io 2.4
commons-lang:commons-lang 2.1
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.5
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.0.4
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.1.3
commons-validator:commons-validator 1.2.0
concurrent:concurrent 1.3.4
coveralls-gradle-plugin:coveralls-gradle-plugin 2.6.3
dnsns:dnsns *
dt:dt *
fastutil:fastutil 6.5.3
freemarker:freemarker 2.3.18
gettext:gettext *
google-api-services-genomics-v1beta2-rev9:google-api-services-genomics-v1beta2-rev9 1.19.0
google-genomics-utils-v1beta2:google-genomics-utils-v1beta2 0.19
gov.nist.math.jama:gov.nist.math.jama 1.1.1
gradle-announce:gradle-announce 2.13
gradle-antlr:gradle-antlr 2.13
gradle-base-services-groovy:gradle-base-services-groovy 2.13
gradle-base-services:gradle-base-services 2.13
gradle-build-comparison:gradle-build-comparison 2.13
gradle-build-init:gradle-build-init 2.13
gradle-cli:gradle-cli 2.13
gradle-code-quality:gradle-code-quality 2.13
gradle-core:gradle-core 2.13
gradle-dependency-management:gradle-dependency-management 2.13
gradle-diagnostics:gradle-diagnostics 2.13
gradle-docs:gradle-docs 2.13
gradle-ear:gradle-ear 2.13
gradle-git-version:gradle-git-version 0.5.1
gradle-ide-native:gradle-ide-native 2.13
gradle-ide:gradle-ide 2.13
gradle-installation-beacon:gradle-installation-beacon 2.13
gradle-ivy:gradle-ivy 2.13
gradle-jacoco:gradle-jacoco 2.13
gradle-javascript:gradle-javascript 2.13
gradle-jetty:gradle-jetty 2.13
gradle-language-groovy:gradle-language-groovy 2.13
gradle-language-java:gradle-language-java 2.13
gradle-language-jvm:gradle-language-jvm 2.13
gradle-language-native:gradle-language-native 2.13
gradle-language-scala:gradle-language-scala 2.13
gradle-maven:gradle-maven 2.13
gradle-messaging:gradle-messaging 2.13
gradle-model-core:gradle-model-core 2.13
gradle-model-groovy:gradle-model-groovy 2.13
gradle-native:gradle-native 2.13
gradle-open-api:gradle-open-api 2.13
gradle-osgi:gradle-osgi 2.13
gradle-platform-base:gradle-platform-base 2.13
gradle-platform-jvm:gradle-platform-jvm 2.13
gradle-platform-native:gradle-platform-native 2.13
gradle-platform-play:gradle-platform-play 2.13
gradle-plugin-development:gradle-plugin-development 2.13
gradle-plugin-use:gradle-plugin-use 2.13
gradle-plugins:gradle-plugins 2.13
gradle-publish:gradle-publish 2.13
gradle-reporting:gradle-reporting 2.13
gradle-resources-http:gradle-resources-http 2.13
gradle-resources-s3:gradle-resources-s3 2.13
gradle-resources-sftp:gradle-resources-sftp 2.13
gradle-resources:gradle-resources 2.13
gradle-scala:gradle-scala 2.13
gradle-signing:gradle-signing 2.13
gradle-sonar:gradle-sonar 2.13
gradle-test-kit:gradle-test-kit 2.13
gradle-testing-base:gradle-testing-base 2.13
gradle-testing-jvm:gradle-testing-jvm 2.13
gradle-testing-native:gradle-testing-native 2.13
gradle-tooling-api-builders:gradle-tooling-api-builders 2.13
gradle-tooling-api:gradle-tooling-api 2.13
gradle-ui:gradle-ui 2.13
gradle-wrapper:gradle-wrapper 2.13
groovy-all:groovy-all 2.0.1
groovy-all:groovy-all 2.4.4
groovy-backports-compat23:groovy-backports-compat23 2.4.4
groovy:groovy 2.0.1
hamcrest-core:hamcrest-core 1.3
htsjdk:htsjdk 2.4.1
icedtea-sound:icedtea-sound *
jaccess:jaccess *
jama:jama 1.0.2
javax.mail:mail 1.4.4
jcifs:jcifs 1.3.17
jcip-annotations:jcip-annotations 1.0
jconsole:jconsole *
jdtCompilerAdapter:jdtCompilerAdapter *
jets3t:jets3t 0.8.1
joda-time:joda-time 2.8.2
json-lib:json-lib 2.3-jdk15
jsr305:jsr305 1.3.9
jsr305:jsr305 2.0.1
jsse:jsse 1.8.0_131
junit:junit 3.8.1
junit:junit 3.8.2
junit:junit 4.10
junit:junit 4.12
libintl:libintl *
local_policy:local_policy *
localedata:localedata *
log4j:log4j 1.2.12
log4j:log4j 1.2.14
log4j:log4j 1.2.15
management-agent:management-agent *
nashorn:nashorn 1.8.0_131-8u131-b11-2ubuntu1.16.04.3-b11
native-platform-freebsd-amd64:native-platform-freebsd-amd64 0.10
native-platform-freebsd-i386:native-platform-freebsd-i386 0.10
native-platform-linux-amd64:native-platform-linux-amd64 0.10
native-platform-linux-i386:native-platform-linux-i386 0.10
native-platform-osx-amd64:native-platform-osx-amd64 0.10
native-platform-osx-i386:native-platform-osx-i386 0.10
native-platform-windows-amd64:native-platform-windows-amd64 0.10
native-platform-windows-i386:native-platform-windows-i386 0.10
native-platform:native-platform 0.10
nekohtml:nekohtml 1.9.14
nekohtml:nekohtml 1.9.16
net.sf.ezmorph:ezmorph 1.0.6
net.sf.varscan.VarScan:v2 4.2
ngs-java:ngs-java 1.2.2
org.apache.ant:ant-antlr 1.9.6
org.apache.ant:ant-apache-bcel 1.9.6
org.apache.ant:ant-apache-bsf 1.9.6
org.apache.ant:ant-apache-log4j 1.9.6
org.apache.ant:ant-apache-oro 1.9.6
org.apache.ant:ant-apache-regexp 1.9.6
org.apache.ant:ant-apache-resolver 1.9.6
org.apache.ant:ant-apache-xalan2 1.9.6
org.apache.ant:ant-commons-logging 1.9.6
org.apache.ant:ant-commons-net 1.9.6
org.apache.ant:ant-javamail 1.9.6
org.apache.ant:ant-jdepend 1.9.6
org.apache.ant:ant-jmf 1.9.6
org.apache.ant:ant-jsch 1.9.6
org.apache.ant:ant-junit4 1.9.6
org.apache.ant:ant-junit 1.9.6
org.apache.ant:ant-launcher 1.7.0
org.apache.ant:ant-launcher 1.9.4
org.apache.ant:ant-launcher 1.9.6
org.apache.ant:ant-swing 1.9.6
org.apache.ant:ant-testutil 1.9.6
org.apache.ant:ant 1.7.0
org.apache.ant:ant 1.8.1
org.apache.ant:ant 1.9.4
org.apache.ant:ant 1.9.6
org.apache.commons.*:commons-cli 1.0
org.apache.commons.beanutils:commons-beanutils 1.7.0
org.apache.commons.digester:commons-digester 1.6
org.apache.commons:commons-compress 1.4.1
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org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.1
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-math 2.2
org.apache.geronimo.specs:geronimo-annotation_1.0_spec 1.0
org.apache.httpcomponents:httpclient 4.1.1
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org.apache.httpcomponents:httpclient 4.3.6
org.apache.httpcomponents:httpclient 4.4.1
org.apache.httpcomponents:httpcore 4.1
org.apache.httpcomponents:httpcore 4.2.2
org.apache.httpcomponents:httpcore 4.3.3
org.apache.httpcomponents:httpcore 4.4.4
org.apache.httpcomponents:httpmime 4.3
org.apache.maven.doxia:doxia-core 1.0
org.mortbay.jetty:jetty 6.1.25
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org.apache.maven.doxia:doxia-decoration-model 1.0
org.apache.maven.doxia:doxia-decoration-model 1.1.4
org.apache.maven.doxia:doxia-logging-api 1.1
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org.apache.maven.doxia:doxia-module-apt 1.0
org.apache.maven.doxia:doxia-module-fml 1.0
org.apache.maven.doxia:doxia-module-fml 1.1.4
org.apache.maven.doxia:doxia-module-xdoc 1.0
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org.apache.maven.doxia:doxia-sink-api 1.0
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org.apache.maven.doxia:doxia-sink-api 1.1
org.apache.maven.doxia:doxia-sink-api 1.1.4
org.apache.maven.doxia:doxia-site-renderer 1.0
org.apache.maven.doxia:doxia-site-renderer 1.1.4
org.apache.maven.plugin-tools:maven-plugin-annotations 3.2
org.apache.maven.plugins:maven-assembly-plugin 2.4
org.apache.maven.plugins:maven-compiler-plugin 3.1
org.apache.maven.plugins:maven-dependency-plugin 2.8
org.apache.maven.plugins:maven-failsafe-plugin 2.16
org.apache.maven.plugins:maven-install-plugin 2.5
org.apache.maven.plugins:maven-invoker-plugin 1.8
org.apache.maven.plugins:maven-jar-plugin 2.4
org.apache.maven.plugins:maven-javadoc-plugin 2.9.1
org.apache.maven.plugins:maven-resources-plugin 2.6
org.apache.maven.plugins:maven-shade-plugin 2.4.3
org.apache.maven.plugins:maven-surefire-plugin 2.16
org.apache.maven.reporting:maven-reporting-api 2.0.6
org.apache.maven.reporting:maven-reporting-api 2.0.9
org.apache.maven.reporting:maven-reporting-api 2.2.1
org.apache.maven.reporting:maven-reporting-api 3.0
org.apache.maven.reporting:maven-reporting-impl 2.0.5
org.apache.maven.reporting:maven-reporting-impl 2.1
org.apache.maven.scm:maven-scm-api 1.2
org.apache.maven.shared:file-management 1.1
org.apache.maven.shared:file-management 1.2.1
org.apache.maven.shared:maven-common-artifact-filters 1.3
org.apache.maven.shared:maven-common-artifact-filters 1.4
org.apache.maven.shared:maven-dependency-analyzer 1.4
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org.apache.maven.shared:maven-doxia-tools 1.0.2
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org.apache.maven.shared:maven-repository-builder 1.0-alpha-2
org.apache.maven.shared:maven-script-interpreter 1.1
org.apache.maven.shared:maven-shared-incremental 1.1
org.apache.maven.shared:maven-shared-io 1.1
org.apache.maven.shared:maven-shared-utils 0.1
org.apache.maven.shared:maven-shared-utils 0.4
org.apache.maven.surefire:maven-surefire-common 2.16
org.apache.maven.surefire:surefire-api 2.16
org.apache.maven.surefire:surefire-booter 2.16
org.apache.maven.wagon:wagon-file 2.4
org.apache.maven.wagon:wagon-http-shared4 2.4
org.apache.maven.wagon:wagon-http 2.4
org.apache.maven.wagon:wagon-provider-api 1.0-alpha-6
org.apache.maven.wagon:wagon-provider-api 1.0-beta-6
org.apache.maven.wagon:wagon-provider-api 2.4
org.apache.maven:maven-aether-provider 3.0
org.apache.maven:maven-aether-provider 3.0.4
org.apache.maven:maven-archiver 2.5
org.apache.maven:maven-artifact-manager 2.0.6
org.apache.maven:maven-artifact-manager 2.0.9
org.apache.maven:maven-artifact-manager 2.2.1
org.apache.maven:maven-artifact 2.0
org.apache.maven:maven-artifact 2.0.6
org.apache.maven:maven-artifact 2.0.9
org.apache.maven:maven-artifact 2.2.1
org.apache.maven:maven-artifact 3.0
org.apache.maven:maven-artifact 3.0.4
org.apache.maven:maven-compat 3.0
org.apache.maven:maven-compat 3.0.4
org.apache.maven:maven-core 2.0.6
org.apache.maven:maven-core 2.0.9
org.apache.maven:maven-core 2.2.1
org.apache.maven:maven-core 3.0
org.apache.maven:maven-core 3.0.4
org.apache.maven:maven-error-diagnostics 2.0.6
org.apache.maven:maven-error-diagnostics 2.0.9
org.apache.maven:maven-error-diagnostics 2.2.1
org.apache.maven:maven-model-builder 3.0
org.apache.maven:maven-model-builder 3.0.4
org.apache.maven:maven-model 2.0.6
org.apache.maven:maven-model 2.0.9
org.apache.maven:maven-model 2.2.1
org.apache.maven:maven-model 3.0
org.apache.maven:maven-model 3.0.4
org.apache.maven:maven-monitor 2.0.6
org.apache.maven:maven-monitor 2.0.9
org.apache.maven:maven-monitor 2.2.1
org.apache.maven:maven-plugin-api 2.0
org.apache.maven:maven-plugin-api 2.0.6
org.apache.maven:maven-plugin-api 2.0.9
org.apache.maven:maven-plugin-api 2.2.1
org.apache.maven:maven-plugin-api 3.0
org.apache.maven:maven-plugin-api 3.0.4
org.apache.maven:maven-plugin-descriptor 2.0.6
org.apache.maven:maven-plugin-descriptor 2.0.9
org.apache.maven:maven-plugin-descriptor 2.2.1
org.apache.maven:maven-plugin-parameter-documenter 2.0.6
org.mortbay.jetty:jetty 6.1.26
org.apache.maven:maven-plugin-parameter-documenter 2.0.9
org.apache.maven:maven-plugin-parameter-documenter 2.2.1
org.apache.maven:maven-plugin-registry 2.0.6
org.apache.maven:maven-plugin-registry 2.0.9
org.apache.maven:maven-plugin-registry 2.2.1
org.apache.maven:maven-profile 2.0.6
org.apache.maven:maven-profile 2.0.9
org.apache.maven:maven-profile 2.2.1
org.apache.maven:maven-project 2.0.6
org.apache.maven:maven-project 2.0.9
org.apache.maven:maven-project 2.2.1
org.apache.maven:maven-repository-metadata 2.0.6
org.apache.maven:maven-repository-metadata 2.0.9
org.apache.maven:maven-repository-metadata 2.2.1
org.apache.maven:maven-repository-metadata 3.0
org.apache.maven:maven-repository-metadata 3.0.4
org.apache.maven:maven-settings-builder 3.0
org.apache.maven:maven-settings-builder 3.0.4
org.apache.maven:maven-settings 2.0.6
org.apache.maven:maven-settings 2.0.9
org.apache.maven:maven-settings 2.2.1
org.apache.maven:maven-settings 3.0
org.apache.maven:maven-settings 3.0.4
org.apache.maven:maven-toolchain 1.0
org.apache.maven:maven-toolchain 2.0.9
org.apache.maven:maven-toolchain 2.2.1
org.apache.oro:oro 2.0.8
org.apache.tools.ant.Main:ant-bootstrap *
org.apache.xbean:xbean-reflect 3.4
org.apache.xerces.impl.Version:xercesImpl 2.8.1
org.apache.xerces.impl.Version:xercesImpl 2.9.1
org.apache.xml.resolver.Catalog:xml-resolver 1.2
org.apache.xmlcommons.Version:xml-apis 1.0.b2
org.apache.xmlcommons.Version:xml-apis 1.3.04
org.apache:commons-httpclient 3.1
org.apache:commons-logging-api 1.1
org.apache:ivy 2.2.0
org.apache:velocity 1.5
org.bouncycastle:bcpg-jdk15on 1.51
org.bouncycastle:bcprov-jdk15on 1.51
org.broadinstitute.gatk.engine.CommandLineGATK:GenomeAnalysisTK *
org.broadinstitute.gatk:gatk-engine 3.6
org.broadinstitute.gatk:gatk-package-distribution 3.6
org.broadinstitute.gatk:gatk-tools-protected 3.6
org.broadinstitute.gatk:gatk-tools-public 3.6
org.broadinstitute.gatk:gatk-utils 3.6
org.codehaus.classworlds:classworlds 1.1
org.codehaus.classworlds:classworlds 1.1-alpha-2
org.codehaus.groovy.modules.http-builder:http-builder 0.7.1
org.codehaus.mojo:build-helper-maven-plugin 1.8
org.codehaus.mojo:exec-maven-plugin 1.2.1
org.codehaus.plexus:plexus-archiver 2.1
org.codehaus.plexus:plexus-archiver 2.1.2
org.codehaus.plexus:plexus-archiver 2.2
org.codehaus.plexus:plexus-archiver 2.3
org.codehaus.plexus:plexus-classworlds 2.2.2
org.codehaus.plexus:plexus-classworlds 2.2.3
org.codehaus.plexus:plexus-classworlds 2.4
org.codehaus.plexus:plexus-compiler-api 2.2
org.codehaus.plexus:plexus-compiler-javac 2.2
org.codehaus.plexus:plexus-compiler-manager 2.2
org.codehaus.plexus:plexus-component-annotations 1.5.5
org.codehaus.plexus:plexus-container-default 1.0-alpha-9
org.codehaus.plexus:plexus-container-default 1.0-alpha-9-stable-1
org.codehaus.plexus:plexus-container-default 1.5.5
org.codehaus.plexus:plexus-i18n 1.0-beta-7
org.codehaus.plexus:plexus-interactivity-api 1.0-alpha-4
org.codehaus.plexus:plexus-interpolation 1.11
org.codehaus.plexus:plexus-interpolation 1.13
org.codehaus.plexus:plexus-interpolation 1.14
org.codehaus.plexus:plexus-interpolation 1.15
org.codehaus.plexus:plexus-interpolation 1.2
org.codehaus.plexus:plexus-interpolation 1.3
org.codehaus.plexus:plexus-io 2.0.2
org.codehaus.plexus:plexus-io 2.0.4
org.codehaus.plexus:plexus-io 2.0.6
org.codehaus.plexus:plexus-utils 1.0.4
org.codehaus.plexus:plexus-utils 1.4.1
org.codehaus.plexus:plexus-utils 1.5.1
org.codehaus.plexus:plexus-utils 1.5.8
org.codehaus.plexus:plexus-utils 2.0.5
org.codehaus.plexus:plexus-utils 2.0.6
org.codehaus.plexus:plexus-utils 3.0
org.codehaus.plexus:plexus-utils 3.0.15
org.codehaus.plexus:plexus-utils 3.0.22
org.codehaus.plexus:plexus-utils 3.0.5
org.codehaus.plexus:plexus-utils 3.0.7
org.codehaus.plexus:plexus-utils 3.0.8
org.codehaus.plexus:plexus-utils 3.0.9
org.codehaus.plexus:plexus-velocity 1.1.7
org.codehaus.sonar:sonar-batch-bootstrapper 2.9
org.debian.security.UpdateCertificates:ca-certificates-java *
org.dom4j:dom4j 1.6.1
org.eclipse.aether:aether-util 0.9.0.M2
org.eclipse.jdt.core:core 3.1.1
org.eclipse.jdt:org.eclipse.jdt.annotation 1.1.0
org.eclipse.jgit:org.eclipse.jgit 4.1.1.201511131810-r
org.fusesource.jansi:jansi 1.2.1
org.gradle.launcher.GradleMain:gradle-launcher 2.13
org.hamcrest:hamcrest-core 1.1
org.javassist:javassist 3.16.1-GA
org.jaxen:jaxen 1.1
org.jdom:jdom 1.1
org.jdom:jdom 1.1.3
org.jdom2:jdom2 2.0.5
org.jgrapht.demo.JGraphAdapterDemo:jgrapht 0.8.3
org.mortbay.jetty:jetty-annotations 6.1.25
org.mortbay.jetty:jetty-naming 6.1.25
org.mortbay.jetty:jetty-plus 6.1.25
org.mortbay.jetty:jetty-util 6.1.25
org.mortbay.jetty:jetty-util 6.1.26
org.mortbay.jetty:jsp-2.1 6.1.14
org.mortbay.jetty:jsp-api-2.1 6.1.14
org.mortbay.jetty:servlet-api 2.5-20081211
org.mozilla.javascript.tools.shell.Main:rhino 1.7R3
org.objectweb.asm.all:asm-all 5.0.3
org.objectweb.asm.all:asm-all 5.0.4
org.objectweb.asm.analysis:asm-analysis 5.0.4
org.objectweb.asm.commons:asm-commons 5.0.2
org.objectweb.asm.commons:asm-commons 5.0.3
org.objectweb.asm.tree:asm-tree 5.0.2
org.objectweb.asm.tree:asm-tree 5.0.3
org.objectweb.asm.util:asm-util 5.0.4
org.objectweb.asm:asm 5.0.2
org.objectweb.asm:asm 5.0.3
org.objenesis:objenesis 1.2
org.reflections:reflections 0.9.9-RC1
org.simpleframework:simple-xml 2.0.4
org.simpleframework:simple 4.1.21
org.slf4j:jcl-over-slf4j 1.5.6
org.slf4j:jcl-over-slf4j 1.7.10
org.slf4j:jul-to-slf4j 1.7.10
org.slf4j:log4j-over-slf4j 1.7.10
org.slf4j:slf4j-api 1.5.6
org.slf4j:slf4j-api 1.6.1
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org.slf4j:slf4j-api 1.7.2
org.slf4j:slf4j-jdk14 1.5.6
org.slf4j:slf4j-log4j12 1.7.5
org.sonatype.aether:aether-api 1.13.1
org.sonatype.aether:aether-api 1.7
org.sonatype.aether:aether-connector-wagon 1.13.1
org.sonatype.aether:aether-impl 1.13.1
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org.sonatype.aether:aether-spi 1.13.1
org.sonatype.aether:aether-spi 1.7
org.sonatype.aether:aether-util 1.13.1
org.sonatype.aether:aether-util 1.7
org.sonatype.plexus:plexus-build-api 0.0.4
org.sonatype.plexus:plexus-cipher 1.4
org.sonatype.plexus:plexus-cipher 1.7
org.sonatype.plexus:plexus-sec-dispatcher 1.3
org.sonatype.pmaven:pmaven-common 0.8-SNAPSHOT
org.sonatype.pmaven:pmaven-groovy 0.8-SNAPSHOT
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org.sonatype.sisu.sisu-guice-noaop:sisu-guice 2.1.7-noaop
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org.sonatype.sisu:sisu-inject-plexus 1.4.2
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org.tukaani.xz:xz 1.5
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picard:picard 2.4.1(7c4d36e011df1aec4689b51efcada44e92d1817f_1464389670)
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rt:rt 1.8.0_131
sa-jdi:sa-jdi *
servlet-api:servlet-api 2.5
shadow:shadow 1.2.3
stax-api:stax-api 1.0.1
stax:stax 1.2.0
tools:tools *
us.levk:drmaa-common 1.0
us.levk:drmaa-gridengine 6.2u5
velocity-dep:velocity-dep 1.4
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zipfs:zipfs 1.8.0_131