Ecosyste.ms: Docker
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theoaphidian/kraken-bracken : latest
A container with all the tools to preprocess metagenome samples with kraken and bracken.
Latest release: about 2 years ago - 156 downloads - 345 dependencies
JSONDependencies
- DBI 1.1.3
- MASS 7.3-58.1
- Matrix 1.5-3
- R6 2.5.1
- RColorBrewer 1.1-3
- Rcpp 1.0.9
- askpass 1.1
- assertthat 0.2.1
- backports 1.4.1
- base64enc 0.1-3
- base 4.2.0
- bit64 4.0.5
- bit 4.0.5
- blob 1.2.3
- broom 1.0.2
- bslib 0.4.2
- cachem 1.0.6
- callr 3.7.3
- cellranger 1.1.0
- cli 3.6.0
- clipr 0.8.0
- cluster 2.1.4
- colorspace 2.0-3
- compiler 4.2.0
- cpp11 0.4.3
- crayon 1.5.2
- curl 4.3.3
- data.table 1.14.6
- datasets 4.2.0
- dbplyr 2.2.1
- digest 0.6.31
- dplyr 1.0.10
- dtplyr 1.2.2
- ellipsis 0.3.2
- evaluate 0.19
- fansi 1.0.3
- farver 2.1.1
- fastmap 1.1.0
- forcats 0.5.2
- fs 1.5.2
- gargle 1.2.1
- generics 0.1.3
- ggplot2 3.4.0
- glue 1.6.2
- googledrive 2.0.0
- googlesheets4 1.0.1
- grDevices 4.2.0
- graphics 4.2.0
- grid 4.2.0
- gtable 0.3.1
- haven 2.5.1
- highr 0.10
- hms 1.1.2
- htmltools 0.5.4
- httr 1.4.4
- ids 1.0.1
- isoband 0.2.7
- jquerylib 0.1.4
- jsonlite 1.8.4
- knitr 1.41
- labeling 0.4.2
- lattice 0.20-45
- lifecycle 1.0.3
- lubridate 1.9.0
- magrittr 2.0.3
- memoise 2.0.1
- methods 4.2.0
- mgcv 1.8-41
- mime 0.12
- modelr 0.1.10
- munsell 0.5.0
- nlme 3.1-161
- openssl 2.0.5
- parallel 4.2.0
- permute 0.9-7
- pillar 1.8.1
- pkgconfig 2.0.3
- prettyunits 1.1.1
- processx 3.8.0
- progress 1.2.2
- ps 1.7.2
- purrr 1.0.1
- rappdirs 0.3.3
- readr 2.1.3
- readxl 1.4.1
- rematch2 2.1.2
- rematch 1.0.1
- remotes 2.4.2
- reprex 2.0.2
- rlang 1.0.6
- rmarkdown 2.19
- rstudioapi 0.14
- rvest 1.0.3
- sass 0.4.4
- scales 1.2.1
- selectr 0.4-2
- splines 4.2.0
- stats4 4.2.0
- stats 4.2.0
- stringi 1.7.12
- stringr 1.5.0
- sys 3.4.1
- tcltk 4.2.0
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- tibble 3.1.8
- tidyamplicons 0.2.2
- tidyr 1.2.1
- tidyselect 1.2.0
- tidyverse 1.3.2
- timechange 0.2.0
- tinytex 0.43
- tools 4.2.0
- translations 4.2.0
- tzdb 0.3.0
- utf8 1.2.2
- utils 4.2.0
- uuid 1.1-0
- vctrs 0.5.1
- vegan 2.6-4
- viridisLite 0.4.1
- vroom 1.6.0
- withr 2.5.0
- xfun 0.36
- xml2 1.3.3
- yaml 2.3.6
- ubuntu/adduser 3.118ubuntu2
- ubuntu/apt 2.0.9
- ubuntu/base-files 11ubuntu5.6
- ubuntu/base-passwd 3.5.47
- ubuntu/bash 5.0-6ubuntu1.2
- ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
- ubuntu/bzip2 1.0.8-2
- ubuntu/ca-certificates 20211016ubuntu0.20.04.1
- ubuntu/coreutils 8.30-3ubuntu2
- ubuntu/dash 0.5.10.2-6
- ubuntu/debconf 1.5.73
- ubuntu/debianutils 4.9.1
- ubuntu/diffutils 1:3.7-3
- ubuntu/dpkg 1.19.7ubuntu3.2
- ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
- ubuntu/fdisk 2.34-0.1ubuntu9.3
- ubuntu/findutils 4.7.0-1ubuntu1
- ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
- ubuntu/git-man 1:2.25.1-1ubuntu3.6
- ubuntu/git 1:2.25.1-1ubuntu3.6
- ubuntu/gpgv 2.2.19-3ubuntu2.2
- ubuntu/grep 3.4-1
- ubuntu/gzip 1.10-0ubuntu4.1
- ubuntu/hostname 3.23
- ubuntu/init-system-helpers 1.57
- ubuntu/libacl1 2.2.53-6
- ubuntu/libapt-pkg6.0 2.0.9
- ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libattr1 1:2.4.48-5
- ubuntu/libaudit-common 1:2.8.5-2ubuntu6
- ubuntu/libaudit1 1:2.8.5-2ubuntu6
- ubuntu/libblkid1 2.34-0.1ubuntu9.3
- ubuntu/libbrotli1 1.0.7-6ubuntu0.1
- ubuntu/libbz2-1.0 1.0.8-2
- ubuntu/libc-bin 2.31-0ubuntu9.9
- ubuntu/libc6 2.31-0ubuntu9.9
- ubuntu/libcap-ng0 0.7.9-2.1build1
- ubuntu/libcom-err2 1.45.5-2ubuntu1.1
- ubuntu/libcrypt1 1:4.4.10-10ubuntu4
- ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.15
- ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
- ubuntu/libdebconfclient0 0.251ubuntu1
- ubuntu/liberror-perl 0.17029-1
- ubuntu/libexpat1 2.2.9-1ubuntu0.6
- ubuntu/libext2fs2 1.45.5-2ubuntu1.1
- ubuntu/libfdisk1 2.34-0.1ubuntu9.3
- ubuntu/libffi7 3.3-4
- ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
- ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
- ubuntu/libgdbm-compat4 1.18.1-5
- ubuntu/libgdbm6 1.18.1-5
- ubuntu/libgmp10 2:6.2.0 dfsg-4ubuntu0.1
- ubuntu/libgnutls30 3.6.13-2ubuntu1.7
- ubuntu/libgpg-error0 1.37-1
- ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.1
- ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libidn2-0 2.2.0-2
- ubuntu/libk5crypto3 1.17-6ubuntu4.1
- ubuntu/libkeyutils1 1.6-6ubuntu1.1
- ubuntu/libkrb5-26-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libkrb5-3 1.17-6ubuntu4.1
- ubuntu/libkrb5support0 1.17-6ubuntu4.1
- ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.9
- ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.9
- ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
- ubuntu/liblzma5 5.2.4-1ubuntu1.1
- ubuntu/libmount1 2.34-0.1ubuntu9.3
- ubuntu/libncurses6 6.2-0ubuntu2
- ubuntu/libncursesw6 6.2-0ubuntu2
- ubuntu/libnettle7 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libnghttp2-14 1.40.0-1build1
- ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
- ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.3
- ubuntu/libpam-modules 1.3.1-5ubuntu4.3
- ubuntu/libpam-runtime 1.3.1-5ubuntu4.3
- ubuntu/libpam0g 1.3.1-5ubuntu4.3
- ubuntu/libpcre2-8-0 10.34-7ubuntu0.1
- ubuntu/libpcre3 2:8.39-12ubuntu0.1
- ubuntu/libperl5.30 5.30.0-9ubuntu0.3
- ubuntu/libprocps8 2:3.3.16-1ubuntu2.3
- ubuntu/libpsl5 0.21.0-1ubuntu1
- ubuntu/libroken18-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build1
- ubuntu/libsasl2-2 2.1.27 dfsg-2ubuntu0.1
- ubuntu/libsasl2-modules-db 2.1.27 dfsg-2ubuntu0.1
- ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
- ubuntu/libselinux1 3.0-1build2
- ubuntu/libsemanage-common 3.0-1build2
- ubuntu/libsemanage1 3.0-1build2
- ubuntu/libsepol1 3.0-1ubuntu0.1
- ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
- ubuntu/libsqlite3-0 3.31.1-4ubuntu0.5
- ubuntu/libss2 1.45.5-2ubuntu1.1
- ubuntu/libssh-4 0.9.3-2ubuntu2.2
- ubuntu/libssl1.1 1.1.1f-1ubuntu2.16
- ubuntu/libstdc 6 10.3.0-1ubuntu1~20.04
- ubuntu/libsystemd0 245.4-4ubuntu3.19
- ubuntu/libtasn1-6 4.16.0-2
- ubuntu/libtinfo6 6.2-0ubuntu2
- ubuntu/libudev1 245.4-4ubuntu3.19
- ubuntu/libunistring2 0.9.10-2
- ubuntu/libuuid1 2.34-0.1ubuntu9.3
- ubuntu/libwind0-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
- ubuntu/login 1:4.8.1-1ubuntu5.20.04.4
- ubuntu/logsave 1.45.5-2ubuntu1.1
- ubuntu/lsb-base 11.1.0ubuntu2
- ubuntu/mawk 1.3.4.20200120-2
- ubuntu/mount 2.34-0.1ubuntu9.3
- ubuntu/ncurses-base 6.2-0ubuntu2
- ubuntu/ncurses-bin 6.2-0ubuntu2
- ubuntu/openssl 1.1.1f-1ubuntu2.16
- ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.4
- ubuntu/perl-base 5.30.0-9ubuntu0.3
- ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.3
- ubuntu/perl 5.30.0-9ubuntu0.3
- ubuntu/procps 2:3.3.16-1ubuntu2.3
- ubuntu/sed 4.7-1
- ubuntu/sensible-utils 0.0.12 nmu1
- ubuntu/sysvinit-utils 2.96-2.1ubuntu1
- ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.2
- ubuntu/tini 0.18.0-1
- ubuntu/ubuntu-keyring 2020.02.11.4
- ubuntu/util-linux 2.34-0.1ubuntu9.3
- ubuntu/wget 1.20.3-1ubuntu2
- ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5
- edirect (devel)
- github.com/fatih/color v1.12.0
- github.com/gedex/inflector v0.0.0-20170307190818-16278e9db813
- github.com/klauspost/cpuid v1.3.1
- github.com/mattn/go-colorable v0.1.8
- github.com/mattn/go-isatty v0.0.12
- github.com/pbnjay/memory v0.0.0-20210728143218-7b4eea64cf58
- github.com/rainycape/unidecode v0.0.0-20150907023854-cb7f23ec59be
- github.com/surgebase/porter2 v0.0.0-20150829210152-56e4718818e8
- golang.org/x/sys v0.0.0-20200223170610-d5e6a3e2c0ae
- golang.org/x/text v0.3.7
- stdlib 1.17
- bootstrap-accessibility-plugin 1.0.6
- bootstrap-colorpicker 3.4.0
- bootstrap-sass 3.4.1
- bootstrap 4.6.0
- bootstrap 5.2.2
- bootswatch 3.4.1
- bootswatch 4.6.0
- bootswatch 5.2.2
- Jinja2 3.1.2
- Markdown 3.4.1
- MarkupSafe 2.1.1
- Pillow 9.2.0
- PySocks 1.7.1
- PyYAML 6.0
- Pygments 2.14.0
- biopython 1.80
- brotlipy 0.7.0
- certifi 2022.12.7
- cffi 1.15.1
- charset-normalizer 2.1.1
- click 8.1.3
- coloredlogs 15.0.1
- colormath 3.0.0
- commonmark 0.9.1
- conda-package-handling 2.0.2
- conda 22.9.0
- conda_package_streaming 0.7.0
- contourpy 1.0.6
- cryptography 38.0.4
- cycler 0.11.0
- dataclasses 0.8
- fonttools 4.38.0
- future 0.18.3
- humanfriendly 10.0
- idna 3.4
- importlib-metadata 6.0.0
- kiwisolver 1.4.4
- libmambapy 1.1.0
- lzstring 1.0.4
- mamba 1.1.0
- matplotlib 3.6.2
- multiqc 1.13
- munkres 1.1.4
- networkx 3.0
- numpy 1.24.1
- packaging 23.0
- pandas 1.5.2
- pip 22.3.1
- pyOpenSSL 22.1.0
- pycosat 0.6.4
- pycparser 2.21
- pyparsing 3.0.9
- python-dateutil 2.8.2
- pytz 2022.7
- requests 2.28.1
- rich-click 1.6.0
- rich 13.0.1
- ruamel-yaml-conda 0.15.80
- setuptools 65.6.3
- simplejson 3.18.1
- six 1.16.0
- spectra 0.0.11
- toolz 0.12.0
- typing_extensions 4.4.0
- unicodedata2 15.0.0
- urllib3 1.26.13
- wheel 0.38.4
- zipp 3.11.0
- zstandard 0.19.0