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genomicmedicinesweden/gms-artic-nanopore : 2023-06-21-p-4.3-d-1.20-c-0.1.11-s-0.3.17

Debian GNU/Linux 10 (buster)

Latest release: over 1 year ago - 3,175 downloads - 153 dependencies

JSON

Dependencies

debian/adduser 3.118
debian/apt 1.8.2.3
debian/base-files 10.3 deb10u13
debian/base-passwd 3.5.46
debian/bash 5.0-4
debian/bsdutils 1:2.33.1-0.1
debian/ca-certificates 20200601~deb10u2
debian/coreutils 8.30-3
debian/dash 0.5.10.2-5
debian/debconf 1.5.71 deb10u1
debian/debian-archive-keyring 2019.1 deb10u1
debian/debianutils 4.8.6.1
debian/diffutils 1:3.7-3
debian/dpkg 1.19.8
debian/e2fsprogs 1.44.5-1 deb10u3
debian/fdisk 2.33.1-0.1
debian/findutils 4.6.0 git 20190209-2
debian/gcc-8-base 8.3.0-6
debian/git-man 1:2.20.1-2 deb10u8
debian/git 1:2.20.1-2 deb10u8
debian/gpgv 2.2.12-1 deb10u2
debian/grep 3.3-1
debian/gzip 1.9-3 deb10u1
debian/hostname 3.21
debian/init-system-helpers 1.56 nmu1
debian/krb5-locales 1.17-3 deb10u5
debian/less 487-0.1 b1
debian/libacl1 2.2.53-4
debian/libapt-pkg5.0 1.8.2.3
debian/libattr1 1:2.4.48-4
debian/libaudit-common 1:2.8.4-3
debian/libaudit1 1:2.8.4-3
debian/libblkid1 2.33.1-0.1
debian/libbsd0 0.9.1-2 deb10u1
debian/libbz2-1.0 1.0.6-9.2~deb10u2
debian/libc-bin 2.28-10 deb10u2
debian/libc6 2.28-10 deb10u2
debian/libcap-ng0 0.7.9-2
debian/libcom-err2 1.44.5-1 deb10u3
debian/libcurl3-gnutls 7.64.0-4 deb10u6
debian/libdb5.3 5.3.28 dfsg1-0.5
debian/libdebconfclient0 0.249
debian/libedit2 3.1-20181209-1
debian/liberror-perl 0.17027-2
debian/libexpat1 2.2.6-2 deb10u6
debian/libext2fs2 1.44.5-1 deb10u3
debian/libfdisk1 2.33.1-0.1
debian/libffi6 3.2.1-9
debian/libgcc1 1:8.3.0-6
debian/libgcrypt20 1.8.4-5 deb10u1
debian/libgdbm-compat4 1.18.1-4
debian/libgdbm6 1.18.1-4
debian/libgmp10 2:6.1.2 dfsg-4 deb10u1
debian/libgnutls30 3.6.7-4 deb10u10
debian/libgpg-error0 1.35-1
debian/libgpm2 1.20.7-5
debian/libgssapi-krb5-2 1.17-3 deb10u5
debian/libhogweed4 3.4.1-1 deb10u1
debian/libidn2-0 2.0.5-1 deb10u1
debian/libk5crypto3 1.17-3 deb10u5
debian/libkeyutils1 1.6-6
debian/libkrb5-3 1.17-3 deb10u5
debian/libkrb5support0 1.17-3 deb10u5
debian/libldap-2.4-2 2.4.47 dfsg-3 deb10u7
debian/libldap-common 2.4.47 dfsg-3 deb10u7
debian/liblz4-1 1.8.3-1 deb10u1
debian/liblzma5 5.2.4-1 deb10u1
debian/libmount1 2.33.1-0.1
debian/libncurses6 6.1 20181013-2 deb10u3
debian/libncursesw6 6.1 20181013-2 deb10u3
debian/libnettle6 3.4.1-1 deb10u1
debian/libnghttp2-14 1.36.0-2 deb10u1
debian/libp11-kit0 0.23.15-2 deb10u1
debian/libpam-modules-bin 1.3.1-5
debian/libpam-modules 1.3.1-5
debian/libpam-runtime 1.3.1-5
debian/libpam0g 1.3.1-5
debian/libpcre2-8-0 10.32-5 deb10u1
debian/libpcre3 2:8.39-12
debian/libperl5.28 5.28.1-6 deb10u1
debian/libprocps7 2:3.3.15-2
debian/libpsl5 0.20.2-2
debian/librtmp1 2.4 20151223.gitfa8646d.1-2
debian/libsasl2-2 2.1.27 dfsg-1 deb10u2
debian/libsasl2-modules-db 2.1.27 dfsg-1 deb10u2
debian/libsasl2-modules 2.1.27 dfsg-1 deb10u2
debian/libseccomp2 2.3.3-4
debian/libselinux1 2.8-1 b1
debian/libsemanage-common 2.8-2
debian/libsemanage1 2.8-2
debian/libsepol1 2.8-1
debian/libsmartcols1 2.33.1-0.1
debian/libss2 1.44.5-1 deb10u3
debian/libssh2-1 1.8.0-2.1
debian/libssl1.1 1.1.1n-0 deb10u5
debian/libstdc 6 8.3.0-6
debian/libsystemd0 241-7~deb10u9
debian/libtasn1-6 4.13-3 deb10u1
debian/libtinfo6 6.1 20181013-2 deb10u3
debian/libudev1 241-7~deb10u9
debian/libunistring2 0.9.10-1
debian/libuuid1 2.33.1-0.1
debian/libx11-6 2:1.6.7-1 deb10u2
debian/libx11-data 2:1.6.7-1 deb10u2
debian/libxau6 1:1.0.8-1 b2
debian/libxcb1 1.13.1-2
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1 b2
debian/libxmuu1 2:1.1.2-2 b3
debian/libzstd1 1.3.8 dfsg-3 deb10u2
debian/login 1:4.5-1.1
debian/lsb-base 10.2019051400
debian/mawk 1.3.3-17 b3
debian/mount 2.33.1-0.1
debian/ncurses-base 6.1 20181013-2 deb10u3
debian/ncurses-bin 6.1 20181013-2 deb10u3
debian/netbase 5.6
debian/openssh-client 1:7.9p1-10 deb10u2
debian/openssl 1.1.1n-0 deb10u5
debian/passwd 1:4.5-1.1
debian/patch 2.7.6-3 deb10u1
debian/perl-base 5.28.1-6 deb10u1
debian/perl-modules-5.28 5.28.1-6 deb10u1
debian/perl 5.28.1-6 deb10u1
debian/procps 2:3.3.15-2
debian/psmisc 23.2-1 deb10u1
debian/publicsuffix 20220811.1734-0 deb10u1
debian/sed 4.7-1
debian/sysvinit-utils 2.93-8
debian/tar 1.30 dfsg-6
debian/tzdata 2021a-0 deb10u11
debian/util-linux 2.33.1-0.1
debian/xauth 1:1.0.10-1
debian/zlib1g 1:1.2.11.dfsg-1 deb10u2

python 3.6.15

ConfigArgParse 1.5.3
GitPython 3.1.18
Jinja2 3.0.3
Keras-Applications 1.0.8
Keras-Preprocessing 1.1.2
Markdown 3.4.3
MarkupSafe 2.0.1
Pillow 8.2.0
PySocks 1.7.1
PyVCF3 1.0.3
PyVCF 0.6.8
PyYAML 5.3.1
Pygments 2.14.0
Werkzeug 2.0.2
absl-py 1.4.0
apipkg 2.0.0
appdirs 1.4.4
args 0.1.0
artic 1.1.3
astor 0.8.1
attrs 22.2.0
biopython 1.79
brotlipy 0.7.0
certifi 2021.5.30
cffi 1.14.6
charset-normalizer 2.1.1
click 8.0.1
clint 0.5.1
colorama 0.4.5
coloredlogs 15.0.1
colormath 3.0.0
commonmark 0.9.1
cryptography 35.0.0
cycler 0.11.0
dataclasses 0.8
datrie 0.8.2
decorator 4.4.2
docutils 0.17.1
future 0.18.2
gast 0.5.3
gitdb 4.0.10
google-pasta 0.2.0
grpcio 1.38.1
h5py 2.7.1
humanfriendly 10.0
idna 3.4
importlib-metadata 4.8.1
iniconfig 1.1.1
intervaltree 3.1.0
ipython-genutils 0.2.0
isal 0.11.1
joblib 1.1.1
jsonschema 4.1.2
jupyter-core 4.8.1
kiwisolver 1.3.1
lzstring 1.0.4
mappy 2.26
matplotlib 3.3.2
medaka 1.0.3
more-itertools 9.1.0
multiqc 1.11
mypy 0.770
nbformat 5.1.3
networkx 2.5.1
numpy 1.16.1
olefile 0.46
ont-fast5-api 4.1.1
packaging 21.3
pandas 1.1.5
parasail 1.3.3
patsy 0.5.3
pip 19.3.1
pluggy 1.0.0
porechop 0.3.2rc0
progressbar33 2.4
protobuf 3.15.8
psutil 5.8.0
py 1.11.0
pyOpenSSL 22.0.0
pycparser 2.21
pyfaidx 0.7.2.1
pyparsing 3.1.0
pyrsistent 0.17.3
pysam 0.21.0
pytest 6.2.5
python-dateutil 2.8.2
pytz 2023.3
ratelimiter 1.2.0
requests 2.28.1
rich 12.6.0
scikit-learn 0.24.2
scipy 1.5.1
seaborn 0.11.2
setuptools 58.0.4
simplejson 3.17.5
six 1.16.0
smmap 3.0.5
snakemake 5.13.0
sortedcontainers 2.4.0
spectra 0.0.11
statsmodels 0.12.0
tensorboard 1.14.0
tensorflow-estimator 1.14.0
tensorflow 1.14.0
termcolor 1.1.0
threadpoolctl 3.1.0
toml 0.10.2
toposort 1.7
tornado 6.1
tqdm 4.65.0
traitlets 4.3.3
typing_extensions 4.1.1
urllib3 1.26.15
whatshap 0.18
wheel 0.37.1
wrapt 1.13.1
xopen 1.2.0
zipp 3.6.0