pvstodghill/pipeline-genomes : latest

Debian GNU/Linux 11 (bullseye)

Latest release: over 1 year ago - 43 downloads - 312 dependencies

JSON

Dependencies

datasets 4.2.2
ellipsis 0.3.2
fansi 1.0.4
farver 2.1.1
ggplot2 3.4.1
glue 1.6.2
grDevices 4.2.2
MASS 7.3-58.3
Matrix 1.5-3
R6 2.5.1
RColorBrewer 1.1-3
base 4.2.2
cli 3.6.1
colorspace 2.1-0
compiler 4.2.2
crayon 1.5.2
graphics 4.2.2
grid 4.2.2
gtable 0.3.3
isoband 0.2.7
labeling 0.4.2
lattice 0.20-45
lifecycle 1.0.3
magrittr 2.0.3
methods 4.2.2
mgcv 1.8-42
munsell 0.5.0
nlme 3.1-162
parallel 4.2.2
pillar 1.9.0
pkgconfig 2.0.3
rlang 1.1.0
scales 1.2.1
splines 4.2.2
stats4 4.2.2
stats 4.2.2
tcltk 4.2.2
tibble 3.2.1
tools 4.2.2
translations 4.2.2
utf8 1.2.3
utils 4.2.2
vctrs 0.6.1
viridisLite 0.4.1
withr 2.5.0

debian/adduser 3.118
debian/apt 2.2.4
debian/base-files 11.1 deb11u6
debian/base-passwd 3.5.51
debian/bash 5.1-2 deb11u1
debian/binutils-common 2.35.2-2
debian/binutils-x86-64-linux-gnu 2.35.2-2
debian/binutils 2.35.2-2
debian/bsdutils 1:2.36.1-8 deb11u1
debian/build-essential 12.9
debian/bzip2 1.0.8-4
debian/ca-certificates 20210119
debian/coreutils 8.32-4 b1
debian/cpp-10 10.2.1-6
debian/cpp 4:10.2.1-1
debian/curl 7.74.0-1.3 deb11u7
debian/dash 0.5.11 git20200708 dd9ef66-5
debian/debconf 1.5.77
debian/debian-archive-keyring 2021.1.1
debian/debianutils 4.11.2
debian/diffutils 1:3.7-5
debian/dirmngr 2.2.27-2 deb11u2
debian/dpkg-dev 1.20.12
debian/dpkg 1.20.12
debian/e2fsprogs 1.46.2-2
debian/fakeroot 1.25.3-1.1
debian/findutils 4.8.0-1
debian/fontconfig-config 2.13.1-4.2
debian/fonts-dejavu-core 2.37-2
debian/g -10 10.2.1-6
debian/g 4:10.2.1-1
debian/gcc-10-base 10.2.1-6
debian/gcc-10 10.2.1-6
debian/gcc-9-base 9.3.0-22
debian/gcc 4:10.2.1-1
debian/git-man 1:2.30.2-1 deb11u2
debian/git 1:2.30.2-1 deb11u2
debian/gnupg-l10n 2.2.27-2 deb11u2
debian/gnupg-utils 2.2.27-2 deb11u2
debian/gnupg 2.2.27-2 deb11u2
debian/gpg-agent 2.2.27-2 deb11u2
debian/gpg-wks-client 2.2.27-2 deb11u2
debian/gpg-wks-server 2.2.27-2 deb11u2
debian/gpg 2.2.27-2 deb11u2
debian/gpgconf 2.2.27-2 deb11u2
debian/gpgsm 2.2.27-2 deb11u2
debian/gpgv 2.2.27-2 deb11u2
debian/grep 3.6-1
debian/gzip 1.10-4 deb11u1
debian/hostname 3.23
debian/init-system-helpers 1.60
debian/less 551-2
debian/libacl1 2.2.53-10
debian/libalgorithm-diff-perl 1.201-1
debian/libalgorithm-diff-xs-perl 0.04-6 b1
debian/libalgorithm-merge-perl 0.08-3
debian/libapt-pkg6.0 2.2.4
debian/libasan6 10.2.1-6
debian/libassuan0 2.5.3-7.1
debian/libatomic1 10.2.1-6
debian/libattr1 1:2.4.48-6
debian/libaudit-common 1:3.0-2
debian/libaudit1 1:3.0-2
debian/libbinutils 2.35.2-2
debian/libblkid1 2.36.1-8 deb11u1
debian/libbrotli1 1.0.9-2 b2
debian/libbsd0 0.11.3-1
debian/libbz2-1.0 1.0.8-4
debian/libc-bin 2.31-13 deb11u5
debian/libc-dev-bin 2.31-13 deb11u5
debian/libc-devtools 2.31-13 deb11u5
debian/libc6-dev 2.31-13 deb11u5
debian/libc6 2.31-13 deb11u5
debian/libcap-ng0 0.7.9-2.2 b1
debian/libcbor0 0.5.0 dfsg-2
debian/libcc1-0 10.2.1-6
debian/libcom-err2 1.46.2-2
debian/libcrypt-dev 1:4.4.18-4
debian/libcrypt1 1:4.4.18-4
debian/libctf-nobfd0 2.35.2-2
debian/libctf0 2.35.2-2
debian/libcurl3-gnutls 7.74.0-1.3 deb11u7
debian/libcurl4 7.74.0-1.3 deb11u7
debian/libdb5.3 5.3.28 dfsg1-0.8
debian/libdebconfclient0 0.260
debian/libdeflate0 1.7-1
debian/libdpkg-perl 1.20.12
debian/libedit2 3.1-20191231-2 b1
debian/liberror-perl 0.17029-1
debian/libexpat1 2.2.10-2 deb11u5
debian/libext2fs2 1.46.2-2
debian/libfakeroot 1.25.3-1.1
debian/libffi7 3.3-6
debian/libfido2-1 1.6.0-2
debian/libfile-fcntllock-perl 0.22-3 b7
debian/libfontconfig1 2.13.1-4.2
debian/libfreetype6 2.10.4 dfsg-1 deb11u1
debian/libgcc-10-dev 10.2.1-6
debian/libgcc-s1 10.2.1-6
debian/libgcrypt20 1.8.7-6
debian/libgd3 2.3.0-2
debian/libgdbm-compat4 1.19-2
debian/libgdbm6 1.19-2
debian/libgmp10 2:6.2.1 dfsg-1 deb11u1
debian/libgnutls30 3.7.1-5 deb11u3
debian/libgomp1 10.2.1-6
debian/libgpg-error0 1.38-2
debian/libgpm2 1.20.7-8
debian/libgssapi-krb5-2 1.18.3-6 deb11u3
debian/libhogweed6 3.7.3-1
debian/libidn2-0 2.3.0-5
debian/libisl23 0.23-1
debian/libitm1 10.2.1-6
debian/libjbig0 2.1-3.1 b2
debian/libjpeg62-turbo 1:2.0.6-4
debian/libk5crypto3 1.18.3-6 deb11u3
debian/libkeyutils1 1.6.1-2
debian/libkrb5-3 1.18.3-6 deb11u3
debian/libkrb5support0 1.18.3-6 deb11u3
debian/libksba8 1.5.0-3 deb11u2
debian/libldap-2.4-2 2.4.57 dfsg-3 deb11u1
debian/libldap-common 2.4.57 dfsg-3 deb11u1
debian/liblocale-gettext-perl 1.07-4 b1
debian/liblsan0 10.2.1-6
debian/liblz4-1 1.9.3-2
debian/liblzma5 5.2.5-2.1~deb11u1
debian/libmd0 1.0.3-3
debian/libmount1 2.36.1-8 deb11u1
debian/libmpc3 1.2.0-1
debian/libmpfr6 4.1.0-3
debian/libncurses6 6.2 20201114-2
debian/libncursesw6 6.2 20201114-2
debian/libnettle8 3.7.3-1
debian/libnghttp2-14 1.43.0-1
debian/libnpth0 1.6-3
debian/libnsl-dev 1.3.0-2
debian/libnsl2 1.3.0-2
debian/libp11-kit0 0.23.22-1
debian/libpam-modules-bin 1.4.0-9 deb11u1
debian/libpam-modules 1.4.0-9 deb11u1
debian/libpam-runtime 1.4.0-9 deb11u1
debian/libpam0g 1.4.0-9 deb11u1
debian/libpcre2-8-0 10.36-2 deb11u1
debian/libpcre3 2:8.39-13
debian/libperl5.32 5.32.1-4 deb11u2
debian/libpng16-16 1.6.37-3
debian/libprocps8 2:3.3.17-5
debian/libpsl5 0.21.0-1.2
debian/libquadmath0 10.2.1-6
debian/libreadline8 8.1-1
debian/librtmp1 2.4 20151223.gitfa8646d.1-2 b2
debian/libsasl2-2 2.1.27 dfsg-2.1 deb11u1
debian/libsasl2-modules-db 2.1.27 dfsg-2.1 deb11u1
debian/libsasl2-modules 2.1.27 dfsg-2.1 deb11u1
debian/libseccomp2 2.5.1-1 deb11u1
debian/libselinux1 3.1-3
debian/libsemanage-common 3.1-1
debian/libsemanage1 3.1-1 b2
debian/libsepol1 3.1-1
debian/libsmartcols1 2.36.1-8 deb11u1
debian/libsqlite3-0 3.34.1-3
debian/libss2 1.46.2-2
debian/libssh2-1 1.9.0-2
debian/libssl1.1 1.1.1n-0 deb11u4
debian/libstdc -10-dev 10.2.1-6
debian/libstdc 6 10.2.1-6
debian/libsystemd0 247.3-7 deb11u1
debian/libtasn1-6 4.16.0-2 deb11u1
debian/libtiff5 4.2.0-1 deb11u4
debian/libtinfo6 6.2 20201114-2
debian/libtirpc-common 1.3.1-1 deb11u1
debian/libtirpc-dev 1.3.1-1 deb11u1
debian/libtirpc3 1.3.1-1 deb11u1
debian/libtsan0 10.2.1-6
debian/libubsan1 10.2.1-6
debian/libudev1 247.3-7 deb11u1
debian/libunistring2 0.9.10-4
debian/libuuid1 2.36.1-8 deb11u1
debian/libwebp6 0.6.1-2.1
debian/libx11-6 2:1.7.2-1
debian/libx11-data 2:1.7.2-1
debian/libxau6 1:1.0.9-1
debian/libxcb1 1.14-3
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1.1
debian/libxmuu1 2:1.1.2-2 b3
debian/libxpm4 1:3.5.12-1
debian/libxxhash0 0.8.0-2
debian/libzstd1 1.4.8 dfsg-2.1
debian/linux-libc-dev 5.10.162-1
debian/login 1:4.8.1-1
debian/logsave 1.46.2-2
debian/lsb-base 11.1.0
debian/make 4.3-4.1
debian/manpages-dev 5.10-1
debian/manpages 5.10-1
debian/mawk 1.3.4.20200120-2
debian/mount 2.36.1-8 deb11u1
debian/ncurses-base 6.2 20201114-2
debian/ncurses-bin 6.2 20201114-2
debian/netbase 6.3
debian/openssh-client 1:8.4p1-5 deb11u1
debian/openssl 1.1.1n-0 deb11u4
debian/passwd 1:4.8.1-1
debian/patch 2.7.6-7
debian/perl-base 5.32.1-4 deb11u2
debian/perl-modules-5.32 5.32.1-4 deb11u2
debian/perl 5.32.1-4 deb11u2
debian/pinentry-curses 1.1.0-4
debian/procps 2:3.3.17-5
debian/psmisc 23.4-2
debian/publicsuffix 20220811.1734-0 deb11u1
debian/readline-common 8.1-1
debian/sed 4.7-1
debian/sensible-utils 0.0.14
debian/sysvinit-utils 2.96-7 deb11u1
debian/tar 1.34 dfsg-1
debian/tzdata 2021a-1 deb11u8
debian/ucf 3.0043
debian/unzip 6.0-26 deb11u1
debian/util-linux 2.36.1-8 deb11u1
debian/xauth 1:1.1-1
debian/xz-utils 5.2.5-2.1~deb11u1
debian/zlib1g 1:1.2.11.dfsg-2 deb11u2

abbrev 0.1.0
activesupport 6.1.4.1
ast 2.4.2
base64 0.1.1
benchmark 0.2.0
bigdecimal 3.1.1
bundler 2.3.7
cgi 0.3.1
concurrent-ruby 1.1.9
coverage-helpers 1.0.0
csv 3.2.2
date 3.2.2
debug 1.4.0
delegate 0.2.0
did_you_mean 1.6.1
digest 3.1.0
docile 1.4.0
drb 2.1.0
english 0.7.1
erb 2.2.3
error_highlight 0.3.0
etc 1.3.0
fcntl 1.0.1
ffi 1.15.4
fiddle 1.1.0
fileutils 1.6.0
find 0.1.1
forwardable 1.3.2
getoptlong 0.1.1
i18n 1.8.11
io-console 0.5.11
io-nonblock 0.1.0
io-wait 0.2.1
ipaddr 1.2.4
irb 1.4.1
json 2.6.1
language_server-protocol 3.16.0.3
listen 3.7.0
logger 1.5.0
matrix 0.4.2
minitest 5.14.4
minitest 5.15.0
mutex_m 0.1.1
net-ftp 0.1.3
net-http 0.2.0
net-imap 0.2.3
net-pop 0.1.1
net-protocol 0.1.2
net-smtp 0.3.1
nkf 0.1.1
observer 0.1.1
open-uri 0.2.0
open3 0.1.1
openssl 3.0.0
optparse 0.2.0
ostruct 0.5.2
parallel 1.21.0
parser 3.0.3.1
pathname 0.2.0
power_assert 2.0.1
pp 0.3.0
prettyprint 0.1.1
prime 0.1.2
pstore 0.1.1
psych 4.0.3
racc 1.6.0
rainbow 3.0.0
rake 13.0.1
rake 13.0.6
rb-fsevent 0.11.0
rb-inotify 0.10.1
rbs 1.7.1
rbs 2.0.0
rbs 2.1.0
rdoc 6.4.0
readline-ext 0.1.4
readline 0.0.3
reline 0.3.0
resolv-replace 0.1.0
resolv 0.2.1
rexml 3.2.5
rinda 0.1.1
rss 0.2.9
ruby2_keywords 0.0.5
securerandom 0.1.1
set 1.0.2
shellwords 0.1.0
simplecov-html 0.12.3
simplecov 0.21.2
simplecov_json_formatter 0.1.3
singleton 0.1.1
stackprof 0.2.17
steep 0.47.0
stringio 3.0.1
strscan 3.0.1
syslog 0.1.0
tempfile 0.1.2
terminal-table 3.0.2
test-unit 3.5.3
time 0.2.0
timeout 0.2.0
tmpdir 0.1.2
tsort 0.1.0
typeprof 0.21.2
tzinfo 2.0.4
un 0.2.0
unicode-display_width 2.1.0
uri 0.11.0
weakref 0.1.1
yaml 0.2.0
zeitwerk 2.5.1
zlib 2.1.1

java 17.0.3-internal 0-adhoc..src
python 3.10.10
python 3.10.9
python 3.7.12
ruby 3.1.2p20

edirect (devel)
github.com/fatih/color v1.12.0
github.com/gedex/inflector v0.0.0-20170307190818-16278e9db813
github.com/klauspost/cpuid v1.3.1
github.com/mattn/go-colorable v0.1.8
github.com/mattn/go-isatty v0.0.12
github.com/pbnjay/memory v0.0.0-20210728143218-7b4eea64cf58
github.com/rainycape/unidecode v0.0.0-20150907023854-cb7f23ec59be
github.com/surgebase/porter2 v0.0.0-20150829210152-56e4718818e8
golang.org/x/sys v0.0.0-20200223170610-d5e6a3e2c0ae
golang.org/x/text v0.3.7

com.sun.jna:DrawGram 3.3.0 (b0)
com.sun.jna:DrawTree 3.3.0 (b0)
commons-beanutils:commons-beanutils 1.8.3
commons-collections:commons-collections 3.2.1
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
jfontchooser:jfontchooser 1.0.5
jrt-fs:jrt-fs 17.0.3-internal
minced:minced *
net.sf.ezmorph:ezmorph 1.0.6
opal:opal 2.1.3
py4j0:py4j0 10.9.7
seppJsonMerger:seppJsonMerger *

@tootallnate/once 1.1.2
@types/node 14.17.32
agent-base 4.3.0
agent-base 6.0.2
ansi-regex 2.1.1
ansi-styles 3.2.1
aproba 1.2.0
are-we-there-yet 1.1.7
argparse 1.0.10
azure-devops-node-api 11.0.1
balanced-match 1.0.2
base64-js 1.5.1
bl 4.1.0
boolbase 1.0.0
brace-expansion 1.1.11
browser-stdout 1.3.1
buffer-crc32 0.2.13
buffer-from 1.1.2
buffer 5.7.1
call-bind 1.0.2
chalk 2.4.2
cheerio-select 1.5.0
cheerio 1.0.0-rc.10
chownr 1.1.4
code-point-at 1.1.0
color-convert 1.9.3
color-name 1.1.3
commander 2.15.1
commander 6.2.1
concat-map 0.0.1
console-control-strings 1.1.0
core-util-is 1.0.3
css-select 4.1.3
css-what 5.1.0
debug 3.1.0
debug 3.2.6
debug 4.3.2
decompress-response 4.2.1
deep-extend 0.6.0
delegates 1.0.0
denodeify 1.2.1
detect-libc 1.0.3
diff 3.5.0
dom-serializer 1.3.2
domelementtype 2.2.0
domhandler 4.2.2
domutils 2.8.0
end-of-stream 1.4.4
entities 2.0.3
entities 2.2.0
es6-promise 4.2.8
es6-promisify 5.0.0
escape-string-regexp 1.0.5
expand-template 2.0.3
fd-slicer 1.1.0
fs-constants 1.0.0
fs.realpath 1.0.0
function-bind 1.1.1
gauge 2.7.4
get-intrinsic 1.1.1
github-from-package 0.0.0
glob 7.1.2
glob 7.2.0
growl 1.10.5
has-flag 3.0.0
has-symbols 1.0.2
has-unicode 2.0.1
has 1.0.3
he 1.1.1
hosted-git-info 4.0.2
htmlparser2 6.1.0
http-proxy-agent 2.1.0
http-proxy-agent 4.0.1
https-proxy-agent 2.2.4
https-proxy-agent 5.0.0
ieee754 1.2.1
inflight 1.0.6
inherits 2.0.4
ini 1.3.8
is-fullwidth-code-point 1.0.0
isarray 1.0.0
js 1.0.0
keytar 7.7.0
leven 3.1.0
license-checker 25.0.1
linkify-it 2.2.0
lodash 4.17.21
lru-cache 6.0.0
markdown-it 10.0.0
mdurl 1.0.1
mime 1.6.0
mimic-response 2.1.0
minimatch 3.0.4
minimist 0.0.8
minimist 1.2.5
mkdirp-classic 0.5.3
mkdirp 0.5.1
mocha 5.2.0
ms 2.0.0
ms 2.1.2
mute-stream 0.0.8
napi-build-utils 1.0.2
node-abi 2.30.1
node-addon-api 3.2.1
nopt 4.0.1
npmlog 4.1.2
nth-check 2.0.1
number-is-nan 1.0.1
object-assign 4.1.1
object-inspect 1.11.0
once 1.4.0
os-homedir 1.0.2
os-tmpdir 1.0.2
osenv 0.1.5
parse-semver 1.1.1
parse5-htmlparser2-tree-adapter 6.0.1
parse5 6.0.1
path-is-absolute 1.0.1
pend 1.2.0
prebuild-install 6.1.4
process-nextick-args 2.0.1
pump 3.0.0
qs 6.10.1
rc 1.2.8
read 1.0.7
readable-stream 2.3.7
readable-stream 3.6.0
rimraf 3.0.2
ruby-typeprof 0.20.1
safe-buffer 5.1.2
sax 1.2.4
semver 5.7.1
semver 7.3.5
set-blocking 2.0.0
side-channel 1.0.4
signal-exit 3.0.5
simple-concat 1.0.1
simple-get 3.1.0
source-map-support 0.5.20
source-map 0.6.1
spdx-license-ids 3.0.5
sprintf-js 1.0.3
string-width 1.0.2
string_decoder 1.1.1
strip-ansi 3.0.1
strip-json-comments 2.0.1
supports-color 5.4.0
supports-color 5.5.0
tar-fs 2.1.1
tar-stream 2.2.0
tmp 0.2.1
tslib 2.3.1
tunnel-agent 0.6.0
tunnel 0.0.6
typed-rest-client 1.8.6
typescript 4.4.4
uc.micro 1.0.6
underscore 1.13.1
url-join 1.1.0
util-deprecate 1.0.2
validate-npm-package-license 3.0.4
vsce 1.103.1
vscode-jsonrpc 6.0.0
vscode-languageclient 7.0.0
vscode-languageserver-protocol 3.16.0
vscode-languageserver-types 3.16.0
vscode-test 0.4.3
vscode 1.1.37
wide-align 1.1.5
wrappy 1.0.2
xml2js 0.4.23
xmlbuilder 11.0.1
yallist 4.0.0
yauzl 2.10.0
yazl 2.5.1

BUSCO 5.4.6
DCA 0.3.4
DendroPy 4.5.2
PASTA 1.7.8
Pillow 9.2.0
PyQt5-sip 12.11.0
PyQt5 5.15.7
PySocks 1.7.1
PyYAML 6.0
anndata 0.8.0
biopython 1.79
brotlipy 0.7.0
cached-property 1.5.2
certifi 2022.12.7
cffi 1.15.1
charset-normalizer 2.0.4
charset-normalizer 2.1.1
cloudpickle 2.2.1
colorama 0.4.6
conda-content-trust 0.1.3
conda-package-handling 2.0.2
conda 23.1.0
conda_package_streaming 0.7.0
cryptography 38.0.2
cryptography 38.0.4
cycler 0.11.0
dnspython 2.3.0
fonttools 4.38.0
future 0.18.2
h5py 3.7.0
hyperopt 0.2.7
idna 3.4
importlib-metadata 4.11.4
joblib 1.2.0
keras 2.12.0
kiwisolver 1.4.4
kopt 0.1.0
libmambapy 1.1.0
llvmlite 0.39.1
mamba 1.1.0
matplotlib 3.5.3
munkres 1.1.4
natsort 8.3.1
networkx 2.7
numba 0.56.3
numpy 1.21.6
packaging 23.0
pandas 1.3.5
patsy 0.5.3
pip 22.3.1
pip 23.0.1
pluggy 1.0.0
ply 3.11
py4j 0.10.9.7
pyOpenSSL 22.0.0
pyOpenSSL 23.1.0
pycosat 0.6.4
pycparser 2.21
pymongo 4.3.2
pynndescent 0.5.8
pyparsing 3.0.9
python-dateutil 2.8.2
pytz 2023.3
requests 2.28.1
requests 2.28.2
ruamel.yaml.clib 0.2.6
ruamel.yaml.clib 0.2.7
ruamel.yaml 0.17.21
scanpy 1.9.3
scikit-learn 1.0.2
scipy 1.7.3
seaborn 0.12.2
sepp 4.5.1
session-info 1.0.0
setuptools 59.8.0
setuptools 65.6.3
setuptools 67.6.0
sip 6.7.2
six 1.16.0
statsmodels 0.13.2
stdlib-list 0.8.0
threadpoolctl 3.1.0
toml 0.10.2
toolz 0.12.0
tornado 6.2
tqdm 4.64.1
tqdm 4.65.0
typing_extensions 4.5.0
umap-learn 0.5.3
unicodedata2 14.0.0
urllib3 1.26.14
urllib3 1.26.15
wheel 0.37.1
wheel 0.40.0
zipp 3.15.0
zstandard 0.18.0
zstandard 0.19.0

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Docker

pvstodghill/pipeline-genomes : latest

Dependencies