dhspence/docker-cnvkit : latest
Latest release: over 8 years ago - 134 downloads - 542 dependencies
JSONDependencies
- BiocInstaller 1.20.3
- DNAcopy 1.44.0
- KernSmooth 2.23-15
- MASS 7.3-45
- Matrix 1.2-3
- PSCBS 0.63.0
- R.cache 0.13.0
- R.methodsS3 1.7.1
- R.oo 1.21.0
- R.utils 2.6.0
- aroma.light 3.0.0
- base 3.2.3
- boot 1.3-17
- class 7.3-14
- cluster 2.0.3
- codetools 0.2-14
- compiler 3.2.3
- datasets 3.2.3
- digest 0.6.15
- foreign 0.8-66
- future 1.7.0
- globals 0.11.0
- grDevices 3.2.3
- graphics 3.2.3
- grid 3.2.3
- lattice 0.20-33
- listenv 0.7.0
- matrixStats 0.53.1
- methods 3.2.3
- mgcv 1.8-11
- nlme 3.1-124
- nnet 7.3-12
- parallel 3.2.3
- rpart 4.1-10
- spatial 7.3-11
- splines 3.2.3
- stats4 3.2.3
- stats 3.2.3
- survival 2.38-3
- tcltk 3.2.3
- tools 3.2.3
- translations 3.2.3
- utils 3.2.3
- ubuntu/adduser 3.113 nmu3ubuntu4
- ubuntu/apt 1.2.24
- ubuntu/autoconf 2.69-9
- ubuntu/automake 1:1.15-4ubuntu1
- ubuntu/autotools-dev 20150820.1
- ubuntu/base-files 9.4ubuntu4.5
- ubuntu/base-passwd 3.5.39
- ubuntu/bash 4.3-14ubuntu1.2
- ubuntu/binutils 2.26.1-1ubuntu1~16.04.6
- ubuntu/blt 2.5.3 dfsg-3
- ubuntu/bsdmainutils 9.0.6ubuntu3
- ubuntu/bsdutils 1:2.27.1-6ubuntu3.3
- ubuntu/build-essential 12.1ubuntu2
- ubuntu/bzip2-doc 1.0.6-8
- ubuntu/bzip2 1.0.6-8
- ubuntu/ca-certificates 20170717~16.04.1
- ubuntu/cdbs 0.4.130ubuntu2
- ubuntu/coreutils 8.25-2ubuntu3~16.04
- ubuntu/cpp-5 5.4.0-6ubuntu1~16.04.9
- ubuntu/cpp 4:5.3.1-1ubuntu1
- ubuntu/curl 7.47.0-1ubuntu2.6
- ubuntu/dash 0.5.8-2.1ubuntu2
- ubuntu/dbus 1.10.6-1ubuntu3.3
- ubuntu/debconf 1.5.58ubuntu1
- ubuntu/debhelper 9.20160115ubuntu3
- ubuntu/debianutils 4.7
- ubuntu/dh-strip-nondeterminism 0.015-1
- ubuntu/dh-translations 129
- ubuntu/diffutils 1:3.3-3
- ubuntu/dpkg-dev 1.18.4ubuntu1.3
- ubuntu/dpkg 1.18.4ubuntu1.3
- ubuntu/e2fslibs 1.42.13-1ubuntu1
- ubuntu/e2fsprogs 1.42.13-1ubuntu1
- ubuntu/fakeroot 1.20.2-1ubuntu1
- ubuntu/file 1:5.25-2ubuntu1
- ubuntu/findutils 4.6.0 git 20160126-2
- ubuntu/fontconfig-config 2.11.94-0ubuntu1.1
- ubuntu/fontconfig 2.11.94-0ubuntu1.1
- ubuntu/fonts-dejavu-core 2.35-1
- ubuntu/fonts-lyx 2.1.4-2
- ubuntu/g -5 5.4.0-6ubuntu1~16.04.9
- ubuntu/g 4:5.3.1-1ubuntu1
- ubuntu/gcc-5-base 5.4.0-6ubuntu1~16.04.9
- ubuntu/gcc-5 5.4.0-6ubuntu1~16.04.9
- ubuntu/gcc-6-base 6.0.1-0ubuntu1
- ubuntu/gcc 4:5.3.1-1ubuntu1
- ubuntu/gettext-base 0.19.7-2ubuntu3
- ubuntu/gettext 0.19.7-2ubuntu3
- ubuntu/gfortran-5 5.4.0-6ubuntu1~16.04.9
- ubuntu/gfortran 4:5.3.1-1ubuntu1
- ubuntu/gnupg 1.4.20-1ubuntu3.1
- ubuntu/gpgv 1.4.20-1ubuntu3.1
- ubuntu/grep 2.25-1~16.04.1
- ubuntu/groff-base 1.22.3-7
- ubuntu/gsfonts 1:8.11 urwcyr1.0.7~pre44-4.2ubuntu1
- ubuntu/gzip 1.6-4ubuntu1
- ubuntu/hicolor-icon-theme 0.15-0ubuntu1
- ubuntu/hostname 3.16ubuntu2
- ubuntu/ifupdown 0.8.10ubuntu1.2
- ubuntu/init-system-helpers 1.29ubuntu4
- ubuntu/init 1.29ubuntu4
- ubuntu/initscripts 2.88dsf-59.3ubuntu2
- ubuntu/insserv 1.14.0-5ubuntu3
- ubuntu/intltool-debian 0.35.0 20060710.4
- ubuntu/intltool 0.51.0-2ubuntu1.16.04.1
- ubuntu/iproute2 4.3.0-1ubuntu3.16.04.3
- ubuntu/isc-dhcp-client 4.3.3-5ubuntu12.7
- ubuntu/isc-dhcp-common 4.3.3-5ubuntu12.7
- ubuntu/javascript-common 11
- ubuntu/krb5-locales 1.13.2 dfsg-5ubuntu2
- ubuntu/libacl1 2.2.52-3
- ubuntu/libalgorithm-diff-perl 1.19.03-1
- ubuntu/libalgorithm-diff-xs-perl 0.04-4build1
- ubuntu/libalgorithm-merge-perl 0.08-3
- ubuntu/libapparmor1 2.10.95-0ubuntu2.7
- ubuntu/libapt-pkg5.0 1.2.24
- ubuntu/libarchive-zip-perl 1.56-2
- ubuntu/libart-2.0-2 2.3.21-2
- ubuntu/libasan2 5.4.0-6ubuntu1~16.04.9
- ubuntu/libasn1-8-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libasprintf-dev 0.19.7-2ubuntu3
- ubuntu/libasprintf0v5 0.19.7-2ubuntu3
- ubuntu/libatk1.0-0 2.18.0-1
- ubuntu/libatk1.0-data 2.18.0-1
- ubuntu/libatm1 1:2.5.1-1.5
- ubuntu/libatomic1 5.4.0-6ubuntu1~16.04.9
- ubuntu/libattr1 1:2.4.47-2
- ubuntu/libaudit-common 1:2.4.5-1ubuntu2
- ubuntu/libaudit1 1:2.4.5-1ubuntu2
- ubuntu/libauthen-sasl-perl 2.1600-1
- ubuntu/libavahi-client3 0.6.32~rc dfsg-1ubuntu2
- ubuntu/libavahi-common-data 0.6.32~rc dfsg-1ubuntu2
- ubuntu/libavahi-common3 0.6.32~rc dfsg-1ubuntu2
- ubuntu/libblas-common 3.6.0-2ubuntu2
- ubuntu/libblas-dev 3.6.0-2ubuntu2
- ubuntu/libblas3 3.6.0-2ubuntu2
- ubuntu/libblkid1 2.27.1-6ubuntu3.3
- ubuntu/libbsd0 0.8.2-1
- ubuntu/libbz2-1.0 1.0.6-8
- ubuntu/libbz2-dev 1.0.6-8
- ubuntu/libc-bin 2.23-0ubuntu10
- ubuntu/libc-dev-bin 2.23-0ubuntu10
- ubuntu/libc6-dev 2.23-0ubuntu10
- ubuntu/libc6 2.23-0ubuntu10
- ubuntu/libcairo2 1.14.6-1
- ubuntu/libcap-ng0 0.7.7-1
- ubuntu/libcap2-bin 1:2.24-12
- ubuntu/libcap2 1:2.24-12
- ubuntu/libcc1-0 5.4.0-6ubuntu1~16.04.9
- ubuntu/libcilkrts5 5.4.0-6ubuntu1~16.04.9
- ubuntu/libcomerr2 1.42.13-1ubuntu1
- ubuntu/libcroco3 0.6.11-1
- ubuntu/libcryptsetup4 2:1.6.6-5ubuntu2.1
- ubuntu/libcups2 2.1.3-4ubuntu0.3
- ubuntu/libcurl3-gnutls 7.47.0-1ubuntu2.6
- ubuntu/libcurl3 7.47.0-1ubuntu2.6
- ubuntu/libdatrie1 0.2.10-2
- ubuntu/libdb5.3 5.3.28-11ubuntu0.1
- ubuntu/libdbus-1-3 1.10.6-1ubuntu3.3
- ubuntu/libdebconfclient0 0.198ubuntu1
- ubuntu/libdevmapper1.02.1 2:1.02.110-1ubuntu10
- ubuntu/libdns-export162 1:9.10.3.dfsg.P4-8ubuntu1.10
- ubuntu/libdpkg-perl 1.18.4ubuntu1.3
- ubuntu/libdrm-amdgpu1 2.4.83-1~16.04.1
- ubuntu/libdrm-common 2.4.83-1~16.04.1
- ubuntu/libdrm-intel1 2.4.83-1~16.04.1
- ubuntu/libdrm-nouveau2 2.4.83-1~16.04.1
- ubuntu/libdrm-radeon1 2.4.83-1~16.04.1
- ubuntu/libdrm2 2.4.83-1~16.04.1
- ubuntu/libedit2 3.1-20150325-1ubuntu2
- ubuntu/libelf1 0.165-3ubuntu1
- ubuntu/libencode-locale-perl 1.05-1
- ubuntu/libexpat1-dev 2.1.0-7ubuntu0.16.04.3
- ubuntu/libexpat1 2.1.0-7ubuntu0.16.04.3
- ubuntu/libfakeroot 1.20.2-1ubuntu1
- ubuntu/libfdisk1 2.27.1-6ubuntu3.3
- ubuntu/libffi6 3.2.1-4
- ubuntu/libfile-basedir-perl 0.07-1
- ubuntu/libfile-desktopentry-perl 0.22-1
- ubuntu/libfile-fcntllock-perl 0.22-3
- ubuntu/libfile-listing-perl 6.04-1
- ubuntu/libfile-mimeinfo-perl 0.27-1
- ubuntu/libfile-stripnondeterminism-perl 0.015-1
- ubuntu/libfont-afm-perl 1.20-1
- ubuntu/libfontconfig1 2.11.94-0ubuntu1.1
- ubuntu/libfontenc1 1:1.1.3-1
- ubuntu/libfreetype6 2.6.1-0.1ubuntu2.3
- ubuntu/libgcc-5-dev 5.4.0-6ubuntu1~16.04.9
- ubuntu/libgcc1 1:6.0.1-0ubuntu1
- ubuntu/libgcrypt20 1.6.5-2ubuntu0.3
- ubuntu/libgdbm3 1.8.3-13.1
- ubuntu/libgdk-pixbuf2.0-0 2.32.2-1ubuntu1.4
- ubuntu/libgdk-pixbuf2.0-common 2.32.2-1ubuntu1.4
- ubuntu/libgettextpo-dev 0.19.7-2ubuntu3
- ubuntu/libgettextpo0 0.19.7-2ubuntu3
- ubuntu/libgfortran-5-dev 5.4.0-6ubuntu1~16.04.9
- ubuntu/libgfortran3 5.4.0-6ubuntu1~16.04.9
- ubuntu/libgl1-mesa-dri 17.2.8-0ubuntu0~16.04.1
- ubuntu/libgl1-mesa-glx 17.2.8-0ubuntu0~16.04.1
- ubuntu/libglade2-0 1:2.6.4-2
- ubuntu/libglapi-mesa 17.2.8-0ubuntu0~16.04.1
- ubuntu/libpcre32-3 2:8.38-3.1
- ubuntu/libglib2.0-0 2.48.2-0ubuntu1
- ubuntu/libglib2.0-data 2.48.2-0ubuntu1
- ubuntu/libgmp10 2:6.1.0 dfsg-2
- ubuntu/libgnutls30 3.4.10-4ubuntu1.4
- ubuntu/libgomp1 5.4.0-6ubuntu1~16.04.9
- ubuntu/libgpg-error0 1.21-2ubuntu1
- ubuntu/libgraphite2-3 1.3.10-0ubuntu0.16.04.1
- ubuntu/libgssapi-krb5-2 1.13.2 dfsg-5ubuntu2
- ubuntu/libgssapi3-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libgtk2.0-0 2.24.30-1ubuntu1.16.04.2
- ubuntu/libgtk2.0-bin 2.24.30-1ubuntu1.16.04.2
- ubuntu/libgtk2.0-common 2.24.30-1ubuntu1.16.04.2
- ubuntu/libharfbuzz0b 1.0.1-1ubuntu0.1
- ubuntu/libhcrypto4-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libheimbase1-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libheimntlm0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libhogweed4 3.2-1ubuntu0.16.04.1
- ubuntu/libhtml-form-perl 6.03-1
- ubuntu/libhtml-format-perl 2.11-2
- ubuntu/libhtml-parser-perl 3.72-1
- ubuntu/libhtml-tagset-perl 3.20-2
- ubuntu/libhtml-tree-perl 5.03-2
- ubuntu/libhttp-cookies-perl 6.01-1
- ubuntu/libhttp-daemon-perl 6.01-1
- ubuntu/libhttp-date-perl 6.02-1
- ubuntu/libhttp-message-perl 6.11-1
- ubuntu/libhttp-negotiate-perl 6.00-2
- ubuntu/libhx509-5-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libice6 2:1.0.9-1
- ubuntu/libicu55 55.1-7ubuntu0.3
- ubuntu/libidn11 1.32-3ubuntu1.2
- ubuntu/libio-html-perl 1.001-1
- ubuntu/libio-socket-ssl-perl 2.024-1
- ubuntu/libipc-system-simple-perl 1.25-3
- ubuntu/libisc-export160 1:9.10.3.dfsg.P4-8ubuntu1.10
- ubuntu/libisl15 0.16.1-1
- ubuntu/libitm1 5.4.0-6ubuntu1~16.04.9
- ubuntu/libjbig0 2.1-3.1
- ubuntu/libjpeg-dev 8c-2ubuntu8
- ubuntu/libjpeg-turbo8-dev 1.4.2-0ubuntu3
- ubuntu/libjpeg-turbo8 1.4.2-0ubuntu3
- ubuntu/libjpeg8-dev 8c-2ubuntu8
- ubuntu/libjpeg8 8c-2ubuntu8
- ubuntu/libjs-jquery-ui 1.10.1 dfsg-1
- ubuntu/libjs-jquery 1.11.3 dfsg-4
- ubuntu/libk5crypto3 1.13.2 dfsg-5ubuntu2
- ubuntu/libkeyutils1 1.5.9-8ubuntu1
- ubuntu/libkmod2 22-1ubuntu5
- ubuntu/libkrb5-26-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libkrb5-3 1.13.2 dfsg-5ubuntu2
- ubuntu/libkrb5support0 1.13.2 dfsg-5ubuntu2
- ubuntu/liblapack-dev 3.6.0-2ubuntu2
- ubuntu/liblapack3 3.6.0-2ubuntu2
- ubuntu/liblcms2-2 2.6-3ubuntu2
- ubuntu/libldap-2.4-2 2.4.42 dfsg-2ubuntu3.2
- ubuntu/libllvm5.0 1:5.0-3~16.04.1
- ubuntu/liblsan0 5.4.0-6ubuntu1~16.04.9
- ubuntu/liblwp-mediatypes-perl 6.02-1
- ubuntu/liblwp-protocol-https-perl 6.06-2
- ubuntu/liblz4-1 0.0~r131-2ubuntu2
- ubuntu/liblzma-dev 5.1.1alpha 20120614-2ubuntu2
- ubuntu/liblzma5 5.1.1alpha 20120614-2ubuntu2
- ubuntu/libmagic1 1:5.25-2ubuntu1
- ubuntu/libmail-sendmail-perl 0.79.16-1
- ubuntu/libmailtools-perl 2.13-1
- ubuntu/libmnl0 1.0.3-5
- ubuntu/libmount1 2.27.1-6ubuntu3.3
- ubuntu/libmpc3 1.0.3-1
- ubuntu/libmpfr4 3.1.4-1
- ubuntu/libmpx0 5.4.0-6ubuntu1~16.04.9
- ubuntu/libncurses5-dev 6.0 20160213-1ubuntu1
- ubuntu/libncurses5 6.0 20160213-1ubuntu1
- ubuntu/libncursesw5 6.0 20160213-1ubuntu1
- ubuntu/libnet-dbus-perl 1.1.0-3build1
- ubuntu/libnet-http-perl 6.09-1
- ubuntu/libnet-smtp-ssl-perl 1.03-1
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- ubuntu/libpam-modules-bin 1.1.8-3.2ubuntu2
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- ubuntu/libpam-runtime 1.1.8-3.2ubuntu2
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- ubuntu/libpango-1.0-0 1.38.1-1
- ubuntu/libpangocairo-1.0-0 1.38.1-1
- ubuntu/libpangoft2-1.0-0 1.38.1-1
- ubuntu/libpaper-utils 1.1.24 nmu4ubuntu1
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- ubuntu/libpciaccess0 0.13.4-1
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- ubuntu/libpipeline1 1.4.1-2
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- ubuntu/libroken18-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/librtmp1 2.4 20151223.gitfa8646d-1ubuntu0.1
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- ubuntu/libsasl2-modules-db 2.1.26.dfsg1-14build1
- ubuntu/libsasl2-modules 2.1.26.dfsg1-14build1
- ubuntu/libseccomp2 2.3.1-2.1ubuntu2~16.04.1
- ubuntu/libselinux1 2.4-3build2
- ubuntu/libsemanage-common 2.3-1build3
- ubuntu/libsemanage1 2.3-1build3
- ubuntu/libsensors4 1:3.4.0-2
- ubuntu/libsepol1 2.4-2
- ubuntu/libsigsegv2 2.10-4
- ubuntu/libsm6 2:1.2.2-1
- ubuntu/libsmartcols1 2.27.1-6ubuntu3.3
- ubuntu/libsqlite3-0 3.11.0-1ubuntu1
- ubuntu/libss2 1.42.13-1ubuntu1
- ubuntu/libssl1.0.0 1.0.2g-1ubuntu4.10
- ubuntu/libstdc -5-dev 5.4.0-6ubuntu1~16.04.9
- ubuntu/libstdc 6 5.4.0-6ubuntu1~16.04.9
- ubuntu/libsys-hostname-long-perl 1.5-1
- ubuntu/libsystemd0 229-4ubuntu21
- ubuntu/libtasn1-6 4.7-3ubuntu0.16.04.3
- ubuntu/libtcl8.6 8.6.5 dfsg-2
- ubuntu/libtext-iconv-perl 1.7-5build4
- ubuntu/libthai-data 0.1.24-2
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- ubuntu/libtie-ixhash-perl 1.23-2
- ubuntu/libtiff5 4.0.6-1ubuntu0.2
- ubuntu/libtimedate-perl 2.3000-2
- ubuntu/libtinfo-dev 6.0 20160213-1ubuntu1
- ubuntu/libtinfo5 6.0 20160213-1ubuntu1
- ubuntu/libtk8.6 8.6.5-1
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- ubuntu/libudev1 229-4ubuntu21
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- ubuntu/liburi-perl 1.71-1
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- ubuntu/libwind0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libwww-perl 6.15-1
- ubuntu/libwww-robotrules-perl 6.01-1
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- ubuntu/libxshmfence1 1.2-1
- ubuntu/libxss1 1:1.2.2-1
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- ubuntu/libxtst6 2:1.2.2-1
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- ubuntu/linux-libc-dev 4.4.0-112.135
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- ubuntu/lsb-base 9.20160110ubuntu0.2
- ubuntu/m4 1.4.17-5
- ubuntu/make 4.1-6
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- ubuntu/man-db 2.7.5-1
- ubuntu/manpages-dev 4.04-2
- ubuntu/manpages 4.04-2
- ubuntu/mawk 1.3.3-17ubuntu2
- ubuntu/mime-support 3.59ubuntu1
- ubuntu/mount 2.27.1-6ubuntu3.3
- ubuntu/multiarch-support 2.23-0ubuntu10
- ubuntu/ncbi-blast 2.2.31-4
- ubuntu/ncbi-data 6.1.20120620-10
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- ubuntu/ncurses-bin 6.0 20160213-1ubuntu1
- ubuntu/netbase 5.3
- ubuntu/openssl 1.0.2g-1ubuntu4.10
- ubuntu/passwd 1:4.2-3.1ubuntu5.3
- ubuntu/patch 2.7.5-1
- ubuntu/perl-base 5.22.1-9ubuntu0.2
- ubuntu/perl-modules-5.22 5.22.1-9ubuntu0.2
- ubuntu/perl 5.22.1-9ubuntu0.2
- ubuntu/po-debconf 1.0.19
- ubuntu/procps 2:3.3.10-4ubuntu2.3
- ubuntu/python-all-dev 2.7.12-1~16.04
- ubuntu/python-all 2.7.12-1~16.04
- ubuntu/python-biopython-doc 1.66 dfsg-1build1
- ubuntu/python-biopython 1.66 dfsg-1build1
- ubuntu/python-cairo 1.8.8-2
- ubuntu/python-cycler 0.9.0-1
- ubuntu/python-dateutil 2.4.2-1
- ubuntu/python-decorator 4.0.6-1
- ubuntu/python-dev 2.7.12-1~16.04
- ubuntu/python-glade2 2.24.0-4ubuntu1
- ubuntu/python-gobject-2 2.28.6-12ubuntu1
- ubuntu/python-gtk2 2.24.0-4ubuntu1
- ubuntu/python-imaging 3.1.2-0ubuntu1.1
- ubuntu/python-matplotlib-data 1.5.1-1ubuntu1
- ubuntu/python-matplotlib 1.5.1-1ubuntu1
- ubuntu/python-minimal 2.7.12-1~16.04
- ubuntu/python-numpy 1:1.11.0-1ubuntu1
- ubuntu/python-pil 3.1.2-0ubuntu1.1
- ubuntu/python-pip-whl 8.1.1-2ubuntu0.4
- ubuntu/python-pip 8.1.1-2ubuntu0.4
- ubuntu/python-pkg-resources 20.7.0-1
- ubuntu/python-pyparsing 2.0.3 dfsg1-1ubuntu0.1
- ubuntu/python-renderpm 3.3.0-1
- ubuntu/python-reportlab-accel 3.3.0-1
- ubuntu/python-reportlab 3.3.0-1
- ubuntu/python-scipy 0.17.0-1
- ubuntu/python-scour 0.32-1
- ubuntu/python-setuptools 20.7.0-1
- ubuntu/python-six 1.10.0-3
- ubuntu/python-tk 2.7.12-1~16.04
- ubuntu/python-tz 2014.10~dfsg1-0ubuntu2
- ubuntu/python-wheel 0.29.0-1
- ubuntu/python2.7-dev 2.7.12-1ubuntu0~16.04.3
- ubuntu/python2.7-minimal 2.7.12-1ubuntu0~16.04.3
- ubuntu/python2.7 2.7.12-1ubuntu0~16.04.3
- ubuntu/python 2.7.12-1~16.04
- ubuntu/r-base-core 3.2.3-4
- ubuntu/r-base-dev 3.2.3-4
- ubuntu/r-cran-boot 1.3-17-1
- ubuntu/r-cran-class 7.3-14-1
- ubuntu/r-cran-cluster 2.0.3-1
- ubuntu/r-cran-codetools 0.2-14-1
- ubuntu/r-cran-foreign 0.8.66-1
- ubuntu/r-cran-kernsmooth 2.23-15-1
- ubuntu/r-cran-lattice 0.20-33-1
- ubuntu/r-cran-mass 7.3-45-1
- ubuntu/r-cran-matrix 1.2-3-1
- ubuntu/r-cran-mgcv 1.8-11-1
- ubuntu/r-cran-nlme 3.1.124-1
- ubuntu/r-cran-nnet 7.3-12-1
- ubuntu/r-cran-rpart 4.1-10-1
- ubuntu/r-cran-spatial 7.3-11-1
- ubuntu/r-cran-survival 2.38-3-1
- ubuntu/r-doc-html 3.2.3-4
- ubuntu/r-recommended 3.2.3-4
- ubuntu/readline-common 6.3-8ubuntu2
- ubuntu/rename 0.20-4
- ubuntu/sed 4.2.2-7
- ubuntu/sensible-utils 0.0.9
- ubuntu/sgml-base 1.26 nmu4ubuntu1
- ubuntu/shared-mime-info 1.5-2ubuntu0.1
- ubuntu/systemd-sysv 229-4ubuntu21
- ubuntu/systemd 229-4ubuntu21
- ubuntu/sysv-rc 2.88dsf-59.3ubuntu2
- ubuntu/sysvinit-utils 2.88dsf-59.3ubuntu2
- ubuntu/tar 1.28-2.1ubuntu0.1
- ubuntu/tk8.6-blt2.5 2.5.3 dfsg-3
- ubuntu/ttf-bitstream-vera 1.10-8
- ubuntu/tzdata 2017c-0ubuntu0.16.04
- ubuntu/ubuntu-keyring 2012.05.19
- ubuntu/ucf 3.0036
- ubuntu/unzip 6.0-20ubuntu1
- ubuntu/util-linux 2.27.1-6ubuntu3.3
- ubuntu/x11-common 1:7.7 13ubuntu3
- ubuntu/x11-utils 7.7 3
- ubuntu/x11-xserver-utils 7.7 7
- ubuntu/xdg-user-dirs 0.15-2ubuntu6
- ubuntu/xdg-utils 1.1.1-1ubuntu1.16.04.1
- ubuntu/xml-core 0.13 nmu2
- ubuntu/xz-utils 5.1.1alpha 20120614-2ubuntu2
- ubuntu/zip 3.0-11
- ubuntu/zlib1g-dev 1:1.2.8.dfsg-2ubuntu4.1
- ubuntu/zlib1g 1:1.2.8.dfsg-2ubuntu4.1
- CNVkit 0.9.1
- Pillow 3.1.2
- argparse 1.2.1
- biopython 1.66
- cycler 0.9.0
- decorator 4.0.6
- future 0.16.0
- futures 3.2.0
- matplotlib 1.5.1
- numpy 1.11.0
- numpy 1.14.0
- pandas 0.22.0
- pip 8.1.1
- pyfaidx 0.5.3.1
- pyparsing 2.0.3
- pysam 0.14
- python-dateutil 2.4.2
- python-dateutil 2.6.1
- pytz 2014.10
- pytz 2018.3
- reportlab 3.3.0
- scipy 0.17.0
- scour 0.32
- setuptools 20.7.0
- setuptools 38.5.1
- six 1.10.0
- six 1.11.0
- wheel 0.29.0
- wsgiref 0.1.2