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sebrauschert/amplicon_pipeline : v0.1

A pipeline for amplicon sequencing analysis of marine fish

Ubuntu 22.04.1 LTS

Latest release: over 1 year ago - 60 downloads - 571 dependencies

Dependencies

certifi 2020.6.20
certifi 2021.10.8
Automat 0.7.0
Babel 2.6.0
Babel 2.8.0
Bottleneck 1.3.4
CherryPy 17.1.0
CherryPy 17.2.0
Deprecated 1.2.13
Django 1.11.15
Django 2.1
ExifRead 2.3.2
Flask 2.0.1
Jinja2 3.0.3
MarkupSafe 2.0.1
Pillow 9.0.1
PyDispatcher 2.0.5
PyGObject 3.42.1
PyGithub 1.55
PyHamcrest 1.9.0
PyJWT 1.6.4
PyJWT 2.3.0
PyNaCl 1.5.0
PySocks 1.6.8
PySocks 1.7.1
PyYAML 5.4.1
Scrapy 1.5.1
SecretStorage 3.3.1
Twisted 18.7.0
Werkzeug 2.0.2
Whoosh 2.7.4
annexremote 1.6.0
apipkg 2.0.0
appdirs 1.4.4
argcomplete 1.8.1
argparse 1.2.1
asn1crypto 0.24.0
attrs 18.1.0
attrs 21.4.0
backports.functools-lru-cache 1.5
backports.pdb 1.0.2
backports.shutil-which 3.5.1
backports.weakref 1.0.post1
boto 2.49.0
brotlipy 0.7.0
certifi 2018.08.24
certifi 2022.5.18.1
certifi 2022.9.24
cffi 1.11.5
cffi 1.15.1
chardet 3.0.4
chardet 4.0.0
charset-normalizer 2.0.4
cheroot 6.4.0
click 8.0.3
colorama 0.4.4
conda-package-handling 1.9.0
conda 22.9.0
configparser 3.5.0
constantly 15.1.0
cryptography 2.3.1
cryptography 3.4.8
cryptography 38.0.1
cssselect 1.0.3
cutadapt 3.2
dask 0.18.2
datalad 0.15.5
dbus-python 1.2.18
distro 1.7.0
django-phonenumber-field 2.0.0
django-phonenumber-field 2.0.1
django-twilio 0.9.2
dnaio 0.6.0
dnspython 2.1.0
entrypoints 0.2.3
enum34 1.1.6
fasteners 0.14.1
flask 0.10.1
functools32 3.2.3.post2
future 0.18.2
h5py 2.8.0
hdf5storage 0.1.15
html5lib 1.1
httpretty 1.1.4
humanize 0.0.0
hyperlink 18.0.0
idna 2.7
idna 3.3
idna 3.4
impacket 0.9.24
importlib-metadata 4.6.4
incremental 17.5.0
iniconfig 1.1.1
ipaddress 1.0.22
isal 0.11.1
iso8601 1.0.2
itsdangerous 2.1.0
jaraco.functools 1.20
jeepney 0.7.1
jsmin 3.0.0
keyring 13.2.1
keyring 23.5.0
keyrings.alt 4.1.0
ldap3 2.8.1
ldapdomaindump 0.9.3
linecache2 1.0.0
lxml 4.2.4
mkl-fft 1.3.1
mkl-random 1.2.2
mkl-service 2.4.0
mock 4.0.3
monotonic 1.6
more-itertools 4.3.0
more-itertools 8.10.0
msgpack 1.0.3
mutagen 1.45.1
nose 1.3.7
numexpr 2.7.3
numpy 1.15.0
numpy 1.15.1
numpy 1.22.3
olefile 0.46
packaging 21.3
pandas 1.4.2
parsel 1.5.0
patool 1.12
pbr 5.8.0
phonenumbers 8.9.11
phonenumbers 8.9.12
phonenumberslite 8.9.10
pip 18.0
pip 21.2.2
pip 21.2.4
pip 8.1.2
pluggy 0.7.1
pluggy 1.0.0
portend 2.3
py 1.11.0
py 1.5.4
py 1.6.0
pyOpenSSL 18.0.0
pyOpenSSL 21.0.0
pyOpenSSL 22.0.0
pyasn1-modules 0.2.2
pyasn1 0.4.4
pyasn1 0.4.8
pycosat 0.6.4
pycparser 2.18
pycparser 2.21
pycryptodomex 3.11.0
pyparsing 2.4.7
pyparsing 3.0.4
pyperclip 1.8.2
pytaxonkit 0.7.2
pytest 7.1.1
python-dateutil 2.8.2
python-gitlab 2.10.1
pytz 2018.5
pytz 2021.3
pytz 2022.1
pywin32-ctypes 0.1.2
pywin32 223
queuelib 1.5.0
requests-toolbelt 0.9.1
requests 2.19.1
requests 2.25.1
requests 2.28.1
ruamel-yaml-conda 0.15.100
service-identity 17.0.0
setuptools 40.2.0
setuptools 44.1.1
setuptools 58.0.4
setuptools 59.6.0
setuptools 61.2.0
setuptools 65.5.0
simplejson 3.17.6
six 1.11.0
six 1.16.0
tempora 1.13
tomli 1.2.2
toolz 0.12.0
tox 3.2.1
tqdm 4.57.0
tqdm 4.64.1
traceback2 1.4.0
twilio 6.16.1
unittest2 1.1.0
urllib3 1.23
urllib3 1.26.12
urllib3 1.26.5
vcrpy 4.0.2
virtualenv 16.0.0
w3lib 1.19.0
webencodings 0.5.1
wheel 0.31.1
wheel 0.37.0
wheel 0.37.1
wrapt 1.13.3
wsgiref 0.1.2
xopen 1.2.1
zipp 1.0.0
zope.interface 4.5.0

python 2.7.18
python 3.10.4
python 3.10.6
python 3.7.10
python 3.9.12