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broadinstitute/picard : 3.1.1

A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats.

Ubuntu 22.04.3 LTS

Latest release: 4 months ago - 1,241,685 downloads - 640 dependencies

JSON

Dependencies

KernSmooth 2.23-20
MASS 7.3-55
Matrix 1.4-0
base 4.1.2
boot 1.3-28
class 7.3-20
cluster 2.1.2
codetools 0.2-18
compiler 4.1.2
datasets 4.1.2
foreign 0.8-82
grDevices 4.1.2
graphics 4.1.2
grid 4.1.2
lattice 0.20-45
methods 4.1.2
mgcv 1.8-39
nlme 3.1-155
nnet 7.3-17
parallel 4.1.2
rpart 4.1.16
spatial 7.3-15
splines 4.1.2
stats4 4.1.2
stats 4.1.2
survival 3.2-13
tcltk 4.1.2
tools 4.1.2
translations 4.1.2
utils 4.1.2

ubuntu/adduser 3.118ubuntu5
ubuntu/ant 1.10.12-1
ubuntu/apt 2.4.10
ubuntu/base-files 12ubuntu4.4
ubuntu/base-passwd 3.5.52build1
ubuntu/bash 5.1-6ubuntu1
ubuntu/binutils-common 2.38-4ubuntu2.3
ubuntu/binutils-x86-64-linux-gnu 2.38-4ubuntu2.3
ubuntu/binutils 2.38-4ubuntu2.3
ubuntu/bsdutils 1:2.37.2-4ubuntu3
ubuntu/ca-certificates-java 20190909ubuntu1.2
ubuntu/ca-certificates 20230311ubuntu0.22.04.1
ubuntu/coreutils 8.32-4.1ubuntu1
ubuntu/curl 7.81.0-1ubuntu1.14
ubuntu/dash 0.5.11 git20210903 057cd650a4ed-3build1
ubuntu/debconf 1.5.79ubuntu1
ubuntu/debianutils 5.5-1ubuntu2
ubuntu/default-jre-headless 2:1.11-72build2
ubuntu/diffutils 1:3.8-0ubuntu2
ubuntu/dpkg 1.21.1ubuntu2.2
ubuntu/e2fsprogs 1.46.5-2ubuntu1.1
ubuntu/findutils 4.8.0-1ubuntu3
ubuntu/fontconfig-config 2.13.1-4.2ubuntu5
ubuntu/fontconfig 2.13.1-4.2ubuntu5
ubuntu/fonts-dejavu-core 2.37-2build1
ubuntu/gcc-12-base 12.3.0-1ubuntu1~22.04
ubuntu/git-man 1:2.34.1-1ubuntu1.10
ubuntu/git 1:2.34.1-1ubuntu1.10
ubuntu/gpgv 2.2.27-3ubuntu2.1
ubuntu/grep 3.7-1build1
ubuntu/gzip 1.10-4ubuntu4.1
ubuntu/hostname 3.23ubuntu2
ubuntu/init-system-helpers 1.62
ubuntu/java-common 0.72build2
ubuntu/libacl1 2.3.1-1
ubuntu/libapt-pkg6.0 2.4.10
ubuntu/libasound2-data 1.2.6.1-1ubuntu1
ubuntu/libasound2 1.2.6.1-1ubuntu1
ubuntu/libattr1 1:2.5.1-1build1
ubuntu/libaudit-common 1:3.0.7-1build1
ubuntu/libaudit1 1:3.0.7-1build1
ubuntu/libavahi-client3 0.8-5ubuntu5.1
ubuntu/libavahi-common-data 0.8-5ubuntu5.1
ubuntu/libavahi-common3 0.8-5ubuntu5.1
ubuntu/libbinutils 2.38-4ubuntu2.3
ubuntu/libblas3 3.10.0-2ubuntu1
ubuntu/libblkid1 2.37.2-4ubuntu3
ubuntu/libbrotli1 1.0.9-2build6
ubuntu/libbsd0 0.11.5-1
ubuntu/libbz2-1.0 1.0.8-5build1
ubuntu/libc-bin 2.35-0ubuntu3.4
ubuntu/libc6 2.35-0ubuntu3.4
ubuntu/libcairo2 1.16.0-5ubuntu2
ubuntu/libcap-ng0 0.7.9-2.2build3
ubuntu/libcap2 1:2.44-1ubuntu0.22.04.1
ubuntu/libcom-err2 1.46.5-2ubuntu1.1
ubuntu/libcrypt1 1:4.4.27-1
ubuntu/libctf-nobfd0 2.38-4ubuntu2.3
ubuntu/libctf0 2.38-4ubuntu2.3
ubuntu/libcups2 2.4.1op1-1ubuntu4.7
ubuntu/libcurl3-gnutls 7.81.0-1ubuntu1.14
ubuntu/libcurl4 7.81.0-1ubuntu1.14
ubuntu/libdatrie1 0.2.13-2
ubuntu/libdb5.3 5.3.28 dfsg1-0.8ubuntu3
ubuntu/libdbus-1-3 1.12.20-2ubuntu4.1
ubuntu/libdebconfclient0 0.261ubuntu1
ubuntu/libdeflate0 1.10-2
ubuntu/liberror-perl 0.17029-1
ubuntu/libexpat1 2.4.7-1ubuntu0.2
ubuntu/libext2fs2 1.46.5-2ubuntu1.1
ubuntu/libffi8 3.4.2-4
ubuntu/libfontconfig1 2.13.1-4.2ubuntu5
ubuntu/libfreetype6 2.11.1 dfsg-1ubuntu0.2
ubuntu/libfribidi0 1.0.8-2ubuntu3.1
ubuntu/libgcc-s1 12.3.0-1ubuntu1~22.04
ubuntu/libgcrypt20 1.9.4-3ubuntu3
ubuntu/libgdbm-compat4 1.23-1
ubuntu/libgdbm6 1.23-1
ubuntu/libgfortran5 12.3.0-1ubuntu1~22.04
ubuntu/libglib2.0-0 2.72.4-0ubuntu2.2
ubuntu/libgmp10 2:6.2.1 dfsg-3ubuntu1
ubuntu/libgnutls30 3.7.3-4ubuntu1.2
ubuntu/libgomp1 12.3.0-1ubuntu1~22.04
ubuntu/libgpg-error0 1.43-3
ubuntu/libgraphite2-3 1.3.14-1build2
ubuntu/libgssapi-krb5-2 1.19.2-2ubuntu0.2
ubuntu/libharfbuzz0b 2.7.4-1ubuntu3.1
ubuntu/libhogweed6 3.7.3-1build2
ubuntu/libice6 2:1.0.10-1build2
ubuntu/libicu70 70.1-2
ubuntu/libidn2-0 2.3.2-2build1
ubuntu/libjbig0 2.1-3.1ubuntu0.22.04.1
ubuntu/libjpeg-turbo8 2.1.2-0ubuntu1
ubuntu/libjpeg8 8c-2ubuntu10
ubuntu/libk5crypto3 1.19.2-2ubuntu0.2
ubuntu/libkeyutils1 1.6.1-2ubuntu3
ubuntu/libkrb5-3 1.19.2-2ubuntu0.2
ubuntu/libkrb5support0 1.19.2-2ubuntu0.2
ubuntu/liblapack3 3.10.0-2ubuntu1
ubuntu/liblcms2-2 2.12~rc1-2build2
ubuntu/libldap-2.5-0 2.5.16 dfsg-0ubuntu0.22.04.1
ubuntu/liblz4-1 1.9.3-2build2
ubuntu/liblzma5 5.2.5-2ubuntu1
ubuntu/libmd0 1.0.4-1build1
ubuntu/libmount1 2.37.2-4ubuntu3
ubuntu/libncurses6 6.3-2ubuntu0.1
ubuntu/libncursesw6 6.3-2ubuntu0.1
ubuntu/libnettle8 3.7.3-1build2
ubuntu/libnghttp2-14 1.43.0-1build3
ubuntu/libnsl2 1.3.0-2build2
ubuntu/libnspr4 2:4.32-3build1
ubuntu/libnss3 2:3.68.2-0ubuntu1.2
ubuntu/libp11-kit0 0.24.0-6build1
ubuntu/libpam-modules-bin 1.4.0-11ubuntu2.3
ubuntu/libpam-modules 1.4.0-11ubuntu2.3
ubuntu/libpam-runtime 1.4.0-11ubuntu2.3
ubuntu/libpam0g 1.4.0-11ubuntu2.3
ubuntu/libpango-1.0-0 1.50.6 ds-2ubuntu1
ubuntu/libpangocairo-1.0-0 1.50.6 ds-2ubuntu1
ubuntu/libpangoft2-1.0-0 1.50.6 ds-2ubuntu1
ubuntu/libpaper-utils 1.1.28build2
ubuntu/libpaper1 1.1.28build2
ubuntu/libpcre2-8-0 10.39-3ubuntu0.1
ubuntu/libpcre3 2:8.39-13ubuntu0.22.04.1
ubuntu/libpcsclite1 1.9.5-3ubuntu1
ubuntu/libperl5.34 5.34.0-3ubuntu1.2
ubuntu/libpixman-1-0 0.40.0-1ubuntu0.22.04.1
ubuntu/libpng16-16 1.6.37-3build5
ubuntu/libprocps8 2:3.3.17-6ubuntu2
ubuntu/libpsl5 0.21.0-1.2build2
ubuntu/libquadmath0 12.3.0-1ubuntu1~22.04
ubuntu/libreadline8 8.1.2-1
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build4
ubuntu/libsasl2-2 2.1.27 dfsg2-3ubuntu1.2
ubuntu/libsasl2-modules-db 2.1.27 dfsg2-3ubuntu1.2
ubuntu/libseccomp2 2.5.3-2ubuntu2
ubuntu/libselinux1 3.3-1build2
ubuntu/libsemanage-common 3.3-1build2
ubuntu/libsemanage2 3.3-1build2
ubuntu/libsepol2 3.3-1build1
ubuntu/libsm6 2:1.2.3-1build2
ubuntu/libsmartcols1 2.37.2-4ubuntu3
ubuntu/libsqlite3-0 3.37.2-2ubuntu0.1
ubuntu/libss2 1.46.5-2ubuntu1.1
ubuntu/libssh-4 0.9.6-2ubuntu0.22.04.1
ubuntu/libssl3 3.0.2-0ubuntu1.10
ubuntu/libstdc 6 12.3.0-1ubuntu1~22.04
ubuntu/libsystemd0 249.11-0ubuntu3.10
ubuntu/libtasn1-6 4.18.0-4build1
ubuntu/libtcl8.6 8.6.12 dfsg-1build1
ubuntu/libthai-data 0.1.29-1build1
ubuntu/libthai0 0.1.29-1build1
ubuntu/libtiff5 4.3.0-6ubuntu0.6
ubuntu/libtinfo6 6.3-2ubuntu0.1
ubuntu/libtirpc-common 1.3.2-2ubuntu0.1
ubuntu/libtirpc3 1.3.2-2ubuntu0.1
ubuntu/libtk8.6 8.6.12-1build1
ubuntu/libudev1 249.11-0ubuntu3.10
ubuntu/libunistring2 1.0-1
ubuntu/libuuid1 2.37.2-4ubuntu3
ubuntu/libwebp7 1.2.2-2ubuntu0.22.04.2
ubuntu/libx11-6 2:1.7.5-1ubuntu0.3
ubuntu/libx11-data 2:1.7.5-1ubuntu0.3
ubuntu/libxau6 1:1.0.9-1build5
ubuntu/libxcb-render0 1.14-3ubuntu3
ubuntu/libxcb-shm0 1.14-3ubuntu3
ubuntu/libxcb1 1.14-3ubuntu3
ubuntu/libxdmcp6 1:1.1.3-0ubuntu5
ubuntu/libxext6 2:1.3.4-1build1
ubuntu/libxft2 2.3.4-1
ubuntu/libxrender1 1:0.9.10-1build4
ubuntu/libxss1 1:1.2.3-1build2
ubuntu/libxt6 1:1.2.1-1
ubuntu/libxxhash0 0.8.1-1
ubuntu/libzstd1 1.4.8 dfsg-3build1
ubuntu/locales 2.35-0ubuntu3.4
ubuntu/login 1:4.8.1-2ubuntu2.1
ubuntu/logsave 1.46.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu4
ubuntu/mawk 1.3.4.20200120-3
ubuntu/mount 2.37.2-4ubuntu3
ubuntu/ncurses-base 6.3-2ubuntu0.1
ubuntu/ncurses-bin 6.3-2ubuntu0.1
ubuntu/openjdk-11-jre-headless 11.0.20.1 1-0ubuntu1~22.04
ubuntu/openssl 3.0.2-0ubuntu1.12
ubuntu/p11-kit-modules 0.24.0-6build1
ubuntu/p11-kit 0.24.0-6build1
ubuntu/passwd 1:4.8.1-2ubuntu2.1
ubuntu/perl-base 5.34.0-3ubuntu1.2
ubuntu/perl-modules-5.34 5.34.0-3ubuntu1.2
ubuntu/perl 5.34.0-3ubuntu1.2
ubuntu/procps 2:3.3.17-6ubuntu2
ubuntu/r-base-core 4.1.2-1ubuntu2
ubuntu/r-base 4.1.2-1ubuntu2
ubuntu/r-cran-boot 1.3-28-2
ubuntu/r-cran-class 7.3-20-1
ubuntu/r-cran-cluster 2.1.2-2
ubuntu/r-cran-codetools 0.2-18-1
ubuntu/r-cran-foreign 0.8.82-1
ubuntu/r-cran-kernsmooth 2.23-20-1
ubuntu/r-cran-lattice 0.20-45-1
ubuntu/r-cran-mass 7.3-55-1
ubuntu/r-cran-matrix 1.4-0-1
ubuntu/r-cran-mgcv 1.8-39-1
ubuntu/r-cran-nlme 3.1.155-1
ubuntu/r-cran-nnet 7.3-17-1
ubuntu/r-cran-rpart 4.1.16-1
ubuntu/r-cran-spatial 7.3-15-1
ubuntu/r-cran-survival 3.2-13-1
ubuntu/r-recommended 4.1.2-1ubuntu2
ubuntu/readline-common 8.1.2-1
ubuntu/sed 4.8-1ubuntu2
ubuntu/sensible-utils 0.0.17
ubuntu/sysvinit-utils 3.01-1ubuntu1
ubuntu/tar 1.34 dfsg-1ubuntu0.1.22.04.1
ubuntu/tzdata 2023c-0ubuntu0.22.04.2
ubuntu/ubuntu-keyring 2021.03.26
ubuntu/ucf 3.0043
ubuntu/unzip 6.0-26ubuntu3.1
ubuntu/usrmerge 25ubuntu2
ubuntu/util-linux 2.37.2-4ubuntu3
ubuntu/wget 1.21.2-2ubuntu1
ubuntu/x11-common 1:7.7 23ubuntu2
ubuntu/xdg-utils 1.1.3-4.1ubuntu3~22.04.1
ubuntu/zip 3.0-12build2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2

bash 5.1.16
java 17.0.9 9

actions/checkout v2
actions/checkout v3
actions/setup-java v3
actions/upload-artifact v3
broadinstitute/dsp-appsec-trivy-action v1
google-github-actions/auth v0
google-github-actions/setup-gcloud v0

annotations:annotations 24.0.0
barclay:barclay 5.0.0
bsh:bsh 2.0b6
com.amazonaws:aws-java-sdk-core 1.12.365
com.amazonaws:aws-java-sdk-kms 1.12.365
com.amazonaws:aws-java-sdk-s3 1.12.365
com.amazonaws:aws-java-sdk-sts 1.12.365
com.amazonaws:jmespath-java 1.12.365
com.esotericsoftware.kryo:kryo 2.24.0
com.esotericsoftware.minlog:minlog 1.2
com.esotericsoftware.reflectasm:reflectasm 1.09
com.fasterxml.jackson.core:jackson-annotations 2.14.1
com.fasterxml.jackson.core:jackson-core 2.14.1
com.fasterxml.jackson.core:jackson-core 2.15.2
com.fasterxml.jackson.core:jackson-databind 2.14.1
com.github.javaparser:javaparser-core 3.17.0
com.google.android:annotations 4.1.1.4
com.google.api-client:google-api-client 1.34.0
com.google.api-client:google-api-client 2.2.0
com.google.api.apicommon:api-common 2.14.1
com.google.api.grpc:gapic-google-cloud-storage-v2 2.25.0-alpha
com.google.api.grpc:grpc-google-cloud-storage-v2 2.25.0-alpha
com.google.api.grpc:proto-google-cloud-storage-v2 2.25.0-alpha
com.google.api.grpc:proto-google-common-protos 2.22.1
com.google.api.grpc:proto-google-iam-v1 1.17.1
com.google.api.services.storage:google-api-services-storage-v1-rev20220705 1.32.1
com.google.api.services.storage:google-api-services-storage-v1-rev20230617 2.0.0
com.google.api:gax-grpc 2.31.1
com.google.api:gax-httpjson 2.31.1
com.google.api:gax 2.31.1
com.google.apis:google-api-services-storage v1-rev20220705-1.32.1
com.google.apis:google-api-services-storage v1-rev20230617-2.0.0
com.google.auth:google-auth-library-credentials 1.19.0
com.google.auth:google-auth-library-oauth2-http 1.19.0
com.google.auto.value:auto-value-annotations 1.10.2
com.google.cloud:google-cloud-core-grpc 2.21.1
com.google.cloud:google-cloud-core-http 2.21.1
com.google.cloud:google-cloud-core 2.21.1
com.google.cloud:google-cloud-nio 0.127.0
com.google.cloud:google-cloud-storage 2.25.0
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.10.1
com.google.code.gson:gson 2.8.9
com.google.errorprone:error_prone_annotations 2.18.0
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 19.0
com.google.guava:guava 31.1-jre
com.google.guava:guava 32.1.1-jre
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-apache-v2 1.42.2
com.google.http-client:google-http-client-apache-v2 1.43.3
com.google.http-client:google-http-client-appengine 1.43.3
com.google.http-client:google-http-client-gson 1.42.2
com.google.http-client:google-http-client-gson 1.43.3
com.google.http-client:google-http-client-jackson2 1.43.3
com.google.http-client:google-http-client 1.42.2
com.google.http-client:google-http-client 1.43.3
com.google.j2objc:j2objc-annotations 2.8
com.google.oauth-client:google-oauth-client 1.34.1
com.google.protobuf.util:protobuf-java-util 3.23.2
com.google.protobuf:protobuf-java 3.23.2
com.googlecode.jatl:jatl 0.2.3
com.googlecode.javaewah:JavaEWAH 1.1.13
com.googlecode.plist:dd-plist 1.21
com.h2database:h2 2.1.214
com.jcraft:jsch 0.1.55
com.jcraft:jzlib 1.1.3
com.sun.activation:jakarta.activation 2.0.0
com.sun.istack:istack-commons-runtime 4.0.0
com.sun.jna:jna 5.10.0
com.sun.xml.bind:jaxb-core 3.0.0
com.sun.xml.bind:jaxb-impl 3.0.0
com.thoughtworks.qdox:qdox 1.12.1
com.zaxxer:HikariCP 4.0.3
commons-beanutils:commons-beanutils 1.8.0
commons-codec:commons-codec 1.15
commons-codec:commons-codec 1.6
commons-collections:commons-collections 3.2.1
commons-io:commons-io 2.11.0
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.3
commons-logging:commons-logging 1.2
coveralls-gradle-plugin:coveralls-gradle-plugin 2.6.3
fastutil:fastutil 8.5.2-min
file-events-linux-aarch64:file-events-linux-aarch64 0.22-milestone-24
file-events-linux-amd64:file-events-linux-amd64 0.22-milestone-24
file-events-osx-aarch64:file-events-osx-aarch64 0.22-milestone-24
file-events-osx-amd64:file-events-osx-amd64 0.22-milestone-24
file-events-windows-amd64-min:file-events-windows-amd64-min 0.22-milestone-24
file-events-windows-amd64:file-events-windows-amd64 0.22-milestone-24
file-events-windows-i386-min:file-events-windows-i386-min 0.22-milestone-24
file-events-windows-i386:file-events-windows-i386 0.22-milestone-24
file-events:file-events 0.22-milestone-24
gatk-native-bindings:gatk-native-bindings 1.0.0
gkl:gkl 0.8.11
gradle-antlr:gradle-antlr 8.2.1
gradle-api-metadata:gradle-api-metadata 8.2.1
gradle-base-annotations:gradle-base-annotations 8.2.1
gradle-base-services-groovy:gradle-base-services-groovy 8.2.1
gradle-base-services:gradle-base-services 8.2.1
gradle-bootstrap:gradle-bootstrap 8.2.1
gradle-build-cache-base:gradle-build-cache-base 8.2.1
gradle-build-cache-http:gradle-build-cache-http 8.2.1
gradle-build-cache-packaging:gradle-build-cache-packaging 8.2.1
gradle-build-cache:gradle-build-cache 8.2.1
gradle-build-events:gradle-build-events 8.2.1
gradle-build-init:gradle-build-init 8.2.1
gradle-build-operations:gradle-build-operations 8.2.1
gradle-build-option:gradle-build-option 8.2.1
gradle-build-profile:gradle-build-profile 8.2.1
gradle-cli:gradle-cli 8.2.1
gradle-code-quality:gradle-code-quality 8.2.1
gradle-composite-builds:gradle-composite-builds 8.2.1
gradle-configuration-cache:gradle-configuration-cache 8.2.1
gradle-core-api:gradle-core-api 8.2.1
gradle-core:gradle-core 8.2.1
gradle-dependency-management:gradle-dependency-management 8.2.1
gradle-diagnostics:gradle-diagnostics 8.2.1
gradle-ear:gradle-ear 8.2.1
gradle-enterprise-logging:gradle-enterprise-logging 8.2.1
gradle-enterprise-operations:gradle-enterprise-operations 8.2.1
gradle-enterprise-workers:gradle-enterprise-workers 8.2.1
gradle-enterprise:gradle-enterprise 8.2.1
gradle-execution:gradle-execution 8.2.1
gradle-file-collections:gradle-file-collections 8.2.1
gradle-file-temp:gradle-file-temp 8.2.1
gradle-file-watching:gradle-file-watching 8.2.1
gradle-files:gradle-files 8.2.1
gradle-functional:gradle-functional 8.2.1
gradle-git-publish:gradle-git-publish 2.1.1
gradle-git-version:gradle-git-version 0.5.1
gradle-hashing:gradle-hashing 8.2.1
gradle-ide-native:gradle-ide-native 8.2.1
gradle-ide:gradle-ide 8.2.1
gradle-installation-beacon:gradle-installation-beacon 8.2.1
gradle-instrumentation-agent:gradle-instrumentation-agent 8.2.1
gradle-internal-instrumentation-api:gradle-internal-instrumentation-api 8.2.1
gradle-ivy:gradle-ivy 8.2.1
gradle-jacoco:gradle-jacoco 8.2.1
gradle-java-compiler-plugin:gradle-java-compiler-plugin 8.2.1
gradle-jvm-services:gradle-jvm-services 8.2.1
gradle-kotlin-dsl-provider-plugins:gradle-kotlin-dsl-provider-plugins 8.2.1
gradle-kotlin-dsl-tooling-builders:gradle-kotlin-dsl-tooling-builders 8.2.1
gradle-kotlin-dsl-tooling-models:gradle-kotlin-dsl-tooling-models 8.2.1
gradle-kotlin-dsl:gradle-kotlin-dsl 8.2.1
gradle-language-groovy:gradle-language-groovy 8.2.1
gradle-language-java:gradle-language-java 8.2.1
gradle-language-jvm:gradle-language-jvm 8.2.1
gradle-language-native:gradle-language-native 8.2.1
gradle-logging-api:gradle-logging-api 8.2.1
gradle-logging:gradle-logging 8.2.1
gradle-maven:gradle-maven 8.2.1
gradle-messaging:gradle-messaging 8.2.1
gradle-model-core:gradle-model-core 8.2.1
gradle-model-groovy:gradle-model-groovy 8.2.1
gradle-native:gradle-native 8.2.1
gradle-normalization-java:gradle-normalization-java 8.2.1
gradle-persistent-cache:gradle-persistent-cache 8.2.1
gradle-platform-base:gradle-platform-base 8.2.1
gradle-platform-jvm:gradle-platform-jvm 8.2.1
gradle-platform-native:gradle-platform-native 8.2.1
gradle-plugin-development:gradle-plugin-development 8.2.1
gradle-plugin-use:gradle-plugin-use 8.2.1
gradle-plugins:gradle-plugins 8.2.1
gradle-problems:gradle-problems 8.2.1
gradle-process-services:gradle-process-services 8.2.1
gradle-publish:gradle-publish 8.2.1
gradle-reporting:gradle-reporting 8.2.1
gradle-resources-gcs:gradle-resources-gcs 8.2.1
gradle-resources-http:gradle-resources-http 8.2.1
gradle-resources-s3:gradle-resources-s3 8.2.1
gradle-resources-sftp:gradle-resources-sftp 8.2.1
gradle-resources:gradle-resources 8.2.1
gradle-runtime-api-info:gradle-runtime-api-info 8.2.1
gradle-scala:gradle-scala 8.2.1
gradle-security:gradle-security 8.2.1
gradle-signing:gradle-signing 8.2.1
gradle-snapshots:gradle-snapshots 8.2.1
gradle-test-kit:gradle-test-kit 8.2.1
gradle-testing-base:gradle-testing-base 8.2.1
gradle-testing-junit-platform:gradle-testing-junit-platform 8.2.1
gradle-testing-jvm-infrastructure:gradle-testing-jvm-infrastructure 8.2.1
gradle-testing-jvm:gradle-testing-jvm 8.2.1
gradle-testing-native:gradle-testing-native 8.2.1
gradle-tooling-api-builders:gradle-tooling-api-builders 8.2.1
gradle-tooling-api:gradle-tooling-api 8.2.1
gradle-tooling-native:gradle-tooling-native 8.2.1
gradle-version-control:gradle-version-control 8.2.1
gradle-worker-processes:gradle-worker-processes 8.2.1
gradle-worker-services:gradle-worker-services 8.2.1
gradle-workers:gradle-workers 8.2.1
gradle-wrapper-shared:gradle-wrapper-shared 8.2.1
org.objenesis:objenesis 2.6
gradle-wrapper:gradle-wrapper *
gradle-wrapper:gradle-wrapper 8.2.1
grpc-alts:grpc-alts 1.56.1
grpc-api:grpc-api 1.56.1
grpc-auth:grpc-auth 1.56.1
grpc-context:grpc-context 1.27.2
grpc-context:grpc-context 1.56.1
grpc-core:grpc-core 1.56.1
grpc-googleapis:grpc-googleapis 1.56.1
grpc-grpclb:grpc-grpclb 1.56.1
grpc-netty-shaded:grpc-netty-shaded 1.56.1
grpc-protobuf-lite:grpc-protobuf-lite 1.56.1
grpc-protobuf:grpc-protobuf 1.56.1
grpc-rls:grpc-rls 1.56.1
grpc-services:grpc-services 1.56.1
grpc-stub:grpc-stub 1.56.1
grpc-xds:grpc-xds 1.56.1
hamcrest-core:hamcrest-core 1.3
htsjdk:htsjdk 4.0.2
io.perfmark:perfmark-api 0.26.0
io.usethesource:capsule 0.6.3
jakarta.xml.bind:jakarta.xml.bind-api 3.0.0
javax.annotation:javax.annotation-api 1.3.2
jcifs:jcifs 1.3.17
jcommander:jcommander 1.78
joda-time:joda-time 2.10.4
jrt-fs:jrt-fs 11.0.20.1
jrt-fs:jrt-fs 17.0.9
json-lib:json-lib 2.3-jdk15
junit-platform-commons:junit-platform-commons 1.8.2
junit-platform-engine:junit-platform-engine 1.8.2
junit-platform-launcher:junit-platform-launcher 1.8.2
junit:junit 4.13.2
kotlin-assignment-compiler-plugin-embeddable:kotlin-assignment-compiler-plugin-embeddable 1.8.20
kotlin-compiler-embeddable:kotlin-compiler-embeddable 1.8.20
kotlin-daemon-embeddable:kotlin-daemon-embeddable 1.8.20
kotlin-reflect:kotlin-reflect 1.8.20
kotlin-sam-with-receiver-compiler-plugin:kotlin-sam-with-receiver-compiler-plugin 1.8.20
kotlin-script-runtime:kotlin-script-runtime 1.8.20
kotlin-scripting-common:kotlin-scripting-common 1.8.20
kotlin-scripting-compiler-embeddable:kotlin-scripting-compiler-embeddable 1.8.20
kotlin-scripting-compiler-impl-embeddable:kotlin-scripting-compiler-impl-embeddable 1.8.20
kotlin-scripting-jvm-host:kotlin-scripting-jvm-host 1.8.20
kotlin-scripting-jvm:kotlin-scripting-jvm 1.8.20
kotlin-stdlib-common:kotlin-stdlib-common 1.8.20
kotlin-stdlib-jdk7:kotlin-stdlib-jdk7 1.8.20
kotlin-stdlib-jdk8:kotlin-stdlib-jdk8 1.8.20
kotlin-stdlib:kotlin-stdlib 1.8.20
kotlinx-metadata-jvm:kotlinx-metadata-jvm 0.5.0
log4j-api:log4j-api 2.20.0
log4j-core:log4j-core 2.20.0
nashorn-core:nashorn-core 15.4
native-platform-freebsd-amd64-libcpp:native-platform-freebsd-amd64-libcpp 0.22-milestone-24
native-platform-linux-aarch64-ncurses5:native-platform-linux-aarch64-ncurses5 0.22-milestone-24
native-platform-linux-aarch64-ncurses6:native-platform-linux-aarch64-ncurses6 0.22-milestone-24
native-platform-linux-aarch64:native-platform-linux-aarch64 0.22-milestone-24
native-platform-linux-amd64-ncurses5:native-platform-linux-amd64-ncurses5 0.22-milestone-24
native-platform-linux-amd64-ncurses6:native-platform-linux-amd64-ncurses6 0.22-milestone-24
native-platform-linux-amd64:native-platform-linux-amd64 0.22-milestone-24
native-platform-osx-aarch64:native-platform-osx-aarch64 0.22-milestone-24
native-platform-osx-amd64:native-platform-osx-amd64 0.22-milestone-24
native-platform-windows-amd64-min:native-platform-windows-amd64-min 0.22-milestone-24
native-platform-windows-amd64:native-platform-windows-amd64 0.22-milestone-24
native-platform-windows-i386-min:native-platform-windows-i386-min 0.22-milestone-24
native-platform-windows-i386:native-platform-windows-i386 0.22-milestone-24
native-platform:native-platform 0.22-milestone-24
nekohtml:nekohtml 1.9.16
net.sf.ezmorph:ezmorph 1.0.6
net.sf.jopt-simple:jopt-simple 5.0.3
ngs-java:ngs-java 2.9.0
opencensus-api:opencensus-api 0.31.1
opencensus-contrib-http-util:opencensus-contrib-http-util 0.31.1
opencensus-proto:opencensus-proto 0.2.0
org.ajoberstar.grgit.gradle:grgit-gradle 5.2.0
org.ajoberstar.grgit:grgit-core 5.2.0
org.antlr:antlr4-runtime 4.7.2
org.apache.ant:ant-antlr 1.10.12
org.apache.ant:ant-junit 1.10.12
org.apache.ant:ant-launcher 1.10.12
org.apache.ant:ant-launcher 1.10.13
org.apache.ant:ant 1.10.12
org.apache.ant:ant 1.10.13
org.apache.commons:commons-collections4 4.4
org.apache.commons:commons-compress 1.21
org.apache.commons:commons-compress 1.24.0
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.12.0
org.apache.commons:commons-math3 3.6.1
org.apache.httpcomponents:httpclient 4.3
org.apache.httpcomponents:httpclient 4.5.13
org.apache.httpcomponents:httpclient 4.5.14
org.apache.httpcomponents:httpcore 4.3
org.apache.httpcomponents:httpcore 4.4.14
org.apache.httpcomponents:httpcore 4.4.16
org.apache.httpcomponents:httpmime 4.3
org.apache.logging.log4j:log4j-api 2.20.0
org.apache.logging.log4j:log4j-core 2.20.0
org.apache.maven:maven-builder-support 3.6.3
org.apache.maven:maven-model 3.6.3
org.apache.maven:maven-repository-metadata 3.6.3
org.apache.maven:maven-settings-builder 3.6.3
org.apache.maven:maven-settings 3.6.3
org.apache.tools.ant.Main:ant-bootstrap *
org.apache.xerces.impl.Version:xercesImpl 2.9.1
org.opentest4j:opentest4j 1.2.0
org.objectweb.asm:asm 9.4
org.apache.xml.resolver.Catalog:xml-resolver 1.2
org.apache.xmlcommons.Version:xml-apis 1.3.04
org.apache.xmlcommons.Version:xml-apis 1.4.01
org.apache:ivy 2.3.0
org.bouncycastle:bcpg-jdk15on 1.68
org.bouncycastle:bcpkix-jdk15on 1.68
org.bouncycastle:bcprov-jdk15on 1.68
org.checkerframework.checker.qual:checker-qual 3.33.0
org.codehaus.groovy.modules.http-builder:http-builder 0.7.1
org.codehaus.groovy:groovy-ant 3.0.17
org.codehaus.groovy:groovy-astbuilder 3.0.17
org.codehaus.groovy:groovy-console 3.0.17
org.codehaus.groovy:groovy-datetime 3.0.17
org.codehaus.groovy:groovy-dateutil 3.0.17
org.codehaus.groovy:groovy-docgenerator 3.0.17
org.codehaus.groovy:groovy-groovydoc 3.0.17
org.codehaus.groovy:groovy-json 3.0.17
org.codehaus.groovy:groovy-nio 3.0.17
org.codehaus.groovy:groovy-sql 3.0.17
org.codehaus.groovy:groovy-swing 3.0.17
org.codehaus.groovy:groovy-templates 3.0.17
org.codehaus.groovy:groovy-test 3.0.17
org.codehaus.groovy:groovy-xml 3.0.17
org.codehaus.groovy:groovy 3.0.17
org.codehaus.mojo:animal-sniffer-annotations 1.23
org.codehaus.plexus:plexus-interpolation 1.26
org.codehaus.plexus:plexus-utils 3.3.0
org.codehaus.plexus:plexus-utils 3.5.1
org.conscrypt:conscrypt-openjdk-uber 2.5.2
org.debian.security.UpdateCertificates:ca-certificates-java *
org.eclipse.jgit:org.eclipse.jgit 5.7.0.202003110725-r
org.eclipse.jgit:org.eclipse.jgit 6.5.0.202303070854-r
org.freemarker.freemarker:freemarker 2.3.30
org.fusesource.hawtjni:hawtjni-runtime 1.17
org.fusesource.jansi:jansi-freebsd32 1.8
org.fusesource.jansi:jansi-freebsd64 1.8
org.fusesource.jansi:jansi-linux32 1.8
org.fusesource.jansi:jansi-linux64 1.8
org.fusesource.jansi:jansi-native 1.8
org.fusesource.jansi:jansi-osx 1.8
org.fusesource.jansi:jansi-windows32 1.8
org.fusesource.jansi:jansi-windows64 1.8
org.fusesource.jansi:jansi 1.18
org.glassfish.jaxb:jaxb-runtime 3.0.0
org.glassfish.jaxb:txw2 3.0.0
org.gradle.launcher.GradleMain:gradle-launcher 8.2.1
org.jdom2:jdom2 2.0.6.1
org.json:json 20230618
org.jsoup:jsoup 1.15.3
org.objectweb.asm.commons:asm-commons 7.3.1
org.objectweb.asm.commons:asm-commons 9.4
org.objectweb.asm.tree.analysis:asm-analysis 7.3.1
org.objectweb.asm.tree:asm-tree 7.3.1
org.objectweb.asm.tree:asm-tree 9.4
org.objectweb.asm.util:asm-util 7.3.1
org.objectweb.asm:asm 7.3.1
org.slf4j:jcl-over-slf4j 1.7.30
org.slf4j:jul-to-slf4j 1.7.30
org.slf4j:log4j-over-slf4j 1.7.30
org.slf4j:slf4j-api 1.7.30
org.sonatype.plexus:plexus-cipher 1.7
org.sonatype.plexus:plexus-sec-dispatcher 1.4
org.testng:testng 6.3.1
org.threeten:threetenbp 1.6.8
org.tukaani.xz:xz 1.9
org.vafer:jdependency 2.8.0
org.xerial.snappy:snappy-java 1.1.10.5
org.yaml:snakeyaml 2.0
picard:picard 3.1.1-SNAPSHOT
plexus-utils:plexus-utils 3.5.1
re2j:re2j 1.7
shadow:shadow 8.1.1
software.amazon.ion:ion-java 1.0.2
tomlj:tomlj 1.0.0
trove4j:trove4j 1.0.20200330