evolbioinfo/covid-align : latest

COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM

Latest release: about 5 years ago - 214 downloads - 2,762 dependencies

JSON

Dependencies

ubuntu/adduser 3.113 nmu3ubuntu3
ubuntu/ansible 2.7.5-1ppa~trusty
ubuntu/apt-transport-https 1.0.1ubuntu2.18
ubuntu/apt-utils 1.0.1ubuntu2.18
ubuntu/apt 1.0.1ubuntu2.18
ubuntu/autoconf 2.69-6
ubuntu/autofs 5.0.7-3ubuntu3.2
ubuntu/automake 1:1.14.1-2ubuntu1
ubuntu/autotools-dev 20130810.1
ubuntu/base-files 7.2ubuntu5.5
ubuntu/base-passwd 3.5.33
ubuntu/bash 4.3-7ubuntu1.7
ubuntu/binutils 2.24-5ubuntu14.2
ubuntu/bsd-mailx 8.1.2-0.20131005cvs-1ubuntu0.14.04.1
ubuntu/bsdmainutils 9.0.5ubuntu1
ubuntu/bsdutils 1:2.20.1-5.1ubuntu20.9
ubuntu/build-essential 11.6ubuntu6
ubuntu/busybox-initramfs 1:1.21.0-1ubuntu1
ubuntu/bzip2 1.0.6-5
ubuntu/ca-certificates-java 20130815ubuntu1
ubuntu/ca-certificates 20170717~14.04.1
ubuntu/cmake-data 2.8.12.2-0ubuntu3
ubuntu/cmake 2.8.12.2-0ubuntu3
ubuntu/condor 8.6.13-453497-ubuntu14
ubuntu/console-setup 1.70ubuntu8
ubuntu/coreutils 8.21-1ubuntu5.4
ubuntu/cpio 2.11 dfsg-1ubuntu1.2
ubuntu/cpp-4.8 4.8.4-2ubuntu1~14.04.4
ubuntu/cpp 4:4.8.2-1ubuntu6
ubuntu/cron 3.0pl1-124ubuntu2
ubuntu/cvmfs-config-default 1.7-1
ubuntu/cvmfs 2.5.2~1 ubuntu12.04
ubuntu/dash 0.5.7-4ubuntu1
ubuntu/debconf-i18n 1.5.51ubuntu2
ubuntu/debconf 1.5.51ubuntu2
ubuntu/debhelper 9.20131227ubuntu1
ubuntu/debianutils 4.4
ubuntu/dh-apparmor 2.10.95-0ubuntu2.6~14.04.4
ubuntu/dh-python 1.20140128-1ubuntu8.2
ubuntu/diffutils 1:3.3-1
ubuntu/dmsetup 2:1.02.77-6ubuntu2
ubuntu/docker-ce 17.09.0~ce-0~ubuntu
ubuntu/dpkg-dev 1.17.5ubuntu5.8
ubuntu/dpkg 1.17.5ubuntu5.8
ubuntu/e2fslibs 1.42.9-3ubuntu1.3
ubuntu/e2fsprogs 1.42.9-3ubuntu1.3
ubuntu/ecryptfs-utils 104-0ubuntu1.14.04.4
ubuntu/eject 2.1.5 deb1 cvs20081104-13.1ubuntu0.14.04.1
ubuntu/environment-modules 3.2.10-8
ubuntu/erlang-asn1 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-base 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-corba 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-crypto 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-diameter 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-edoc 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-eldap 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-erl-docgen 1:16.b.3-dfsg-1ubuntu2.2
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ubuntu/erlang-ic 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-inets 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-mnesia 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-nox 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-odbc 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-os-mon 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-parsetools 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-percept 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-public-key 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-runtime-tools 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-snmp 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-ssh 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-ssl 1:16.b.3-dfsg-1ubuntu2.2
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ubuntu/erlang-tools 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-webtool 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/erlang-xmerl 1:16.b.3-dfsg-1ubuntu2.2
ubuntu/file 1:5.14-2ubuntu3.4
ubuntu/findutils 4.4.2-7
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ubuntu/fuse 2.9.2-4ubuntu4.14.04.1
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ubuntu/git-core 1:1.9.1-1ubuntu0.10
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ubuntu/gpgv 1.4.16-1ubuntu2.6
ubuntu/grep 2.16-1
ubuntu/gridengine-common 6.2u5-7.3
ubuntu/gridengine-drmaa1.0 6.2u5-7.3
ubuntu/groff-base 1.22.2-5
ubuntu/gzip 1.6-3ubuntu1
ubuntu/hostname 3.15ubuntu1
ubuntu/ifupdown 0.7.47.2ubuntu4.5
ubuntu/init-system-helpers 1.14ubuntu1
ubuntu/initramfs-tools-bin 0.103ubuntu4.11
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ubuntu/initscripts 2.88dsf-41ubuntu6.3
ubuntu/insserv 1.14.0-5ubuntu2
ubuntu/intltool-debian 0.35.0 20060710.1
ubuntu/iproute2 3.12.0-2ubuntu1.2
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ubuntu/iso-codes 3.52-1
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ubuntu/kmod 15-0ubuntu7
ubuntu/less 458-2
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ubuntu/libblas-dev 1.2.20110419-7
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ubuntu/libblkid1 2.20.1-5.1ubuntu20.9
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ubuntu/libcap-ng0 0.7.3-1ubuntu2
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ubuntu/libcap2 1:2.24-0ubuntu2
ubuntu/libcgmanager0 0.24-0ubuntu7.5
ubuntu/libcloog-isl4 0.18.2-1
ubuntu/libcomerr2 1.42.9-3ubuntu1.3
ubuntu/libcroco3 0.6.8-2ubuntu1
ubuntu/libcups2 1.7.2-0ubuntu1.11
ubuntu/libcurl3-gnutls 7.35.0-1ubuntu2.19
ubuntu/libcurl3 7.35.0-1ubuntu2.20
ubuntu/libdate-manip-perl 6.42-1
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python 2.7.15

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jsonschema 2.6.0
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mock 1.0.1
mock 2.0.0
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parsley 1.3
paste 3.0.4
pastedeploy 1.5.2
pastescript 2.0.2
pathlib2 2.3.2
pathtools 0.1.2
pbr 4.2.0
pip 1.5.4
pip 10.0.1
pip 18.1
pluggy 0.7.1
prettytable 0.7.2
psutil 1.2.1
psutil 5.4.7
psycopg2-binary 2.7.4
pulsar-galaxy-lib 0.8.3
py 1.6.0
pyOpenSSL 18.0.0
pyasn1 0.4.4
pycodestyle 2.3.1
pycosat 0.6.3
pycparser 2.18
pycrypto 2.6.1
pycryptodome 3.6.6
pycryptodomex 3.6.6
pyflakes 1.6.0
pygithub3 0.5.1
pygments 2.2.0
pyinotify 0.9.6
pyjwkest 1.4.0
pyjwt 1.6.4
pykwalify 1.6.1
pynacl 1.2.1
pyopenssl 18.0.0
pyparsing 2.2.0
pyparsing 2.3.0
pyperclip 1.6.4
pysam 0.14.1
pysftp 0.2.9
pytest-html 1.19.0
pytest-metadata 1.7.0
pytest-pythonpath 0.7.3
pytest 3.8.0
python-apt 0.9.3.5ubuntu3
python-cinderclient 4.0.0
python-dateutil 2.7.3
python-genomespaceclient 1.1.0
python-glanceclient 2.12.0
python-keystoneclient 3.17.0
python-ldap 2.4.10
python-ldap 2.4.44
python-neutronclient 6.9.0
python-novaclient 11.0.0
python-openid 2.2.5
python-swiftclient 3.6.0
pytz 2018.5
pyyaml 3.13
recommonmark 0.4.0
repoze.lru 0.7
requests-oauthlib 1.0.0
requests-toolbelt 0.8.0
requests 2.19.1
requests 2.2.1
requests 2.21.0
requestsexceptions 1.4.0
rfc3986 1.1.0
routes 2.4.1
ruamel_yaml 0.15.46
s3transfer 0.1.13
scandir 1.9.0
selenium 3.14.0
setuptools 3.3
setuptools 40.2.0
setuptools 40.6.3
simplejson 3.16.0
six 1.11.0
six 1.12.0
six 1.5.2
snowballstemmer 1.2.1
social-auth-core 1.5.0
sphinx-rtd-theme 0.4.1
sphinx 1.6.7
sphinxcontrib-websupport 1.1.0
sqlalchemy-migrate 0.11.0
sqlalchemy-utils 0.33.3
sqlalchemy 1.2.11
sqlparse 0.2.4
stevedore 1.29.0
subprocess32 3.5.2
supervisor 3.3.4
svgwrite 1.1.12
tempita 0.5.2
tenacity 4.12.0
testfixtures 6.3.0
twill 0.9.1
typing 3.6.6
tzlocal 1.5.1
uWSGI 2.0.17.1
unattended-upgrades 0.1
unicodecsv 0.14.1
unittest2 0.5.1
unittest2py3k 0.5.1
urllib3 1.23
urllib3 1.24.1
urllib3 1.7.1
uwsgi 2.0.17.1
vine 1.1.4
virtualenv 1.11.4
virtualenv 16.0.0
warlock 1.3.0
watchdog 0.9.0
wcwidth 0.1.7
webencodings 0.5.1
webob 1.8.2
wheel 0.31.1
wheel 0.32.3
whoosh 2.7.4
wrapt 1.10.11
wsgiref 0.1.2

ecosyste.ms

Data

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Applications

Experiments

Docker

evolbioinfo/covid-align : latest

Dependencies