Ecosyste.ms: Docker
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ontresearch/wf-somatic-snp : shae351df8d88fcab571a346a1cff7b48237536bd0f
Ubuntu 20.04.6 LTS
Latest release: 12 months ago - 3,263 downloads - 127 dependencies
JSONDependencies
- ubuntu/adduser 3.118ubuntu2
- ubuntu/apt 2.0.9
- ubuntu/base-files 11ubuntu5.7
- ubuntu/base-passwd 3.5.47
- ubuntu/bash 5.0-6ubuntu1.2
- ubuntu/bsdutils 1:2.34-0.1ubuntu9.4
- ubuntu/bzip2 1.0.8-2
- ubuntu/ca-certificates 20230311ubuntu0.20.04.1
- ubuntu/coreutils 8.30-3ubuntu2
- ubuntu/dash 0.5.10.2-6
- ubuntu/debconf 1.5.73
- ubuntu/debianutils 4.9.1
- ubuntu/diffutils 1:3.7-3
- ubuntu/dpkg 1.19.7ubuntu3.2
- ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
- ubuntu/fdisk 2.34-0.1ubuntu9.4
- ubuntu/findutils 4.7.0-1ubuntu1
- ubuntu/gcc-10-base 10.5.0-1ubuntu1~20.04
- ubuntu/gpgv 2.2.19-3ubuntu2.2
- ubuntu/grep 3.4-1
- ubuntu/gzip 1.10-0ubuntu4.1
- ubuntu/hostname 3.23
- ubuntu/init-system-helpers 1.57
- ubuntu/libacl1 2.2.53-6
- ubuntu/libapt-pkg6.0 2.0.9
- ubuntu/libattr1 1:2.4.48-5
- ubuntu/libaudit-common 1:2.8.5-2ubuntu6
- ubuntu/libaudit1 1:2.8.5-2ubuntu6
- ubuntu/libblkid1 2.34-0.1ubuntu9.4
- ubuntu/libbz2-1.0 1.0.8-2
- ubuntu/libc-bin 2.31-0ubuntu9.9
- ubuntu/libc6 2.31-0ubuntu9.9
- ubuntu/libcap-ng0 0.7.9-2.1build1
- ubuntu/libcom-err2 1.45.5-2ubuntu1.1
- ubuntu/libcrypt1 1:4.4.10-10ubuntu4
- ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
- ubuntu/libdebconfclient0 0.251ubuntu1
- ubuntu/libext2fs2 1.45.5-2ubuntu1.1
- ubuntu/libfdisk1 2.34-0.1ubuntu9.4
- ubuntu/libffi7 3.3-4
- ubuntu/libgcc-s1 10.5.0-1ubuntu1~20.04
- ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
- ubuntu/libgmp10 2:6.2.0 dfsg-4ubuntu0.1
- ubuntu/libgnutls30 3.6.13-2ubuntu1.8
- ubuntu/libgpg-error0 1.37-1
- ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libidn2-0 2.2.0-2
- ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
- ubuntu/liblzma5 5.2.4-1ubuntu1.1
- ubuntu/libmount1 2.34-0.1ubuntu9.4
- ubuntu/libncurses6 6.2-0ubuntu2.1
- ubuntu/libncursesw6 6.2-0ubuntu2.1
- ubuntu/libnettle7 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
- ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.6
- ubuntu/libpam-modules 1.3.1-5ubuntu4.6
- ubuntu/libpam-runtime 1.3.1-5ubuntu4.6
- ubuntu/libpam0g 1.3.1-5ubuntu4.6
- ubuntu/libpcre2-8-0 10.34-7ubuntu0.1
- ubuntu/libpcre3 2:8.39-12ubuntu0.1
- ubuntu/libprocps8 2:3.3.16-1ubuntu2.3
- ubuntu/libpsl5 0.21.0-1ubuntu1
- ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
- ubuntu/libselinux1 3.0-1build2
- ubuntu/libsemanage-common 3.0-1build2
- ubuntu/libsemanage1 3.0-1build2
- ubuntu/libsepol1 3.0-1ubuntu0.1
- ubuntu/libsmartcols1 2.34-0.1ubuntu9.4
- ubuntu/libss2 1.45.5-2ubuntu1.1
- ubuntu/libssl1.1 1.1.1f-1ubuntu2.19
- ubuntu/libstdc 6 10.5.0-1ubuntu1~20.04
- ubuntu/libsystemd0 245.4-4ubuntu3.22
- ubuntu/libtasn1-6 4.16.0-2
- ubuntu/libtinfo6 6.2-0ubuntu2.1
- ubuntu/libudev1 245.4-4ubuntu3.22
- ubuntu/libunistring2 0.9.10-2
- ubuntu/libuuid1 2.34-0.1ubuntu9.4
- ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
- ubuntu/login 1:4.8.1-1ubuntu5.20.04.4
- ubuntu/logsave 1.45.5-2ubuntu1.1
- ubuntu/lsb-base 11.1.0ubuntu2
- ubuntu/mawk 1.3.4.20200120-2
- ubuntu/mount 2.34-0.1ubuntu9.4
- ubuntu/ncurses-base 6.2-0ubuntu2.1
- ubuntu/ncurses-bin 6.2-0ubuntu2.1
- ubuntu/openssl 1.1.1f-1ubuntu2.19
- ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.4
- ubuntu/perl-base 5.30.0-9ubuntu0.4
- ubuntu/procps 2:3.3.16-1ubuntu2.3
- ubuntu/sed 4.7-1
- ubuntu/sensible-utils 0.0.12 nmu1
- ubuntu/sudo 1.8.31-1ubuntu1.5
- ubuntu/sysvinit-utils 2.96-2.1ubuntu1
- ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.3
- ubuntu/ubuntu-keyring 2020.02.11.4
- ubuntu/util-linux 2.34-0.1ubuntu9.4
- ubuntu/wget 1.20.3-1ubuntu2
- ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5
- actions/checkout v3
- actions/setup-node v3
- actions/setup-python v4
- actions/stale v7
- actions/upload-artifact v3
- dawidd6/action-download-artifact v2
- marocchino/sticky-pull-request-comment v2
- mshick/add-pr-comment v1
- nf-core/setup-nextflow v1
- psf/black stable
- seqeralabs/action-tower-launch v2
- wntrblm/nox 2023.04.22
- com.damnhandy:handy-uri-templates 2.1.6
- com.github.erosb:everit-json-schema 1.10.0
- com.google.re2j:re2j 1.1
- commons-beanutils:commons-beanutils 1.9.3
- commons-collections:commons-collections 3.2.2
- commons-digester:commons-digester 1.8.1
- commons-logging:commons-logging 1.2
- commons-validator:commons-validator 1.6
- joda-time:joda-time 2.9.4
- nfcore_external_java_deps:nfcore_external_java_deps *
- org.json:json 20180813
- js 1.0.0
- Brotli 1.0.9
- Cheetah3 3.2.6.post2
- GitPython 3.1.32
- Jinja2 3.1.2
- Keras-Preprocessing 1.1.2
- Markdown 3.4.4
- MarkupSafe 2.1.3
- PuLP 2.7.0
- PyJWT 2.8.0
- PySocks 1.7.1
- PyVCF3 1.0.3
- PyYAML 6.0.1
- Pygments 2.16.1
- Routes 2.5.1
- SQLAlchemy 2.0.20
- Werkzeug 2.3.7
- Whoosh 2.7.4
- absl-py 1.4.0
- aiohttp 3.8.5
- aiosignal 1.3.1
- amply 0.1.6
- annotated-types 0.5.0
- astunparse 1.6.3
- async-timeout 4.0.3
- attmap 0.13.2
- attrs 23.1.0
- backports.functools-lru-cache 1.6.5
- biopython 1.81
- bleach 6.0.0
- blinker 1.6.2
- boltons 23.0.0
- cached-property 1.5.2
- cachetools 5.3.1
- cattrs 23.1.2
- certifi 2023.7.22
- cffi 1.14.2
- cffi 1.14.4
- cfgv 3.3.1
- charset-normalizer 3.2.0
- click 8.1.7
- colorama 0.4.6
- conda-package-handling 2.2.0
- conda 23.7.3
- conda_package_streaming 0.9.0
- cryptography 39.0.0
- distlib 0.3.7
- docutils 0.20.1
- epi2melabs 0.0.44
- exceptiongroup 1.1.3
- filelock 3.12.2
- filetype 1.2.0
- flask 1.1.1
- flatbuffers 23.5.26
- frozenlist 1.4.0
- future 0.18.3
- galaxy-containers 22.1.1
- galaxy-tool-util 22.1.5
- galaxy-util 22.1.1
- gast 0.5.4
- gitdb 4.0.10
- gmpy2 2.1.2
- google-auth-oauthlib 0.4.6
- google-auth 2.17.3
- google-pasta 0.2.0
- greenlet 0.4.13
- greenlet 2.0.2
- grpcio 1.43.0
- h5py 3.9.0
- html5lib 1.1
- identify 2.5.27
- idna 3.4
- importlib-metadata 6.8.0
- importlib-resources 6.0.1
- iniconfig 2.0.0
- isal 1.2.0
- itsdangerous 2.1.2
- jsonpatch 1.32
- jsonpointer 2.0
- jsonschema-specifications 2023.7.1
- jsonschema 4.19.0
- keras 2.8.0
- logmuse 0.2.6
- lxml 4.9.2
- markdown-it-py 3.0.0
- mdurl 0.1.0
- mpmath 1.3.0
- multidict 6.0.4
- networkx 3.1
- nf-core 2.9
- nodeenv 1.8.0
- numexpr 2.7.3
- numpy 1.25.2
- oauthlib 3.2.2
- opt-einsum 3.3.0
- oyaml 1.0
- packaging 23.1
- pandas 2.0.3
- pip 23.2.1
- piper 0.12.3
- pkgutil_resolve_name 1.3.10
- platformdirs 3.10.0
- pluggy 1.2.0
- pooch 1.7.0
- pre-commit 3.3.3
- prompt-toolkit 3.0.39
- protobuf 3.19.6
- psutil 5.9.5
- py-cpuinfo 9.0.0
- pyOpenSSL 23.2.0
- pyasn1-modules 0.2.7
- pyasn1 0.4.8
- pycosat 0.6.4
- pycparser 2.21
- pycryptodome 3.18.0
- pydantic 2.3.0
- pydantic_core 2.6.3
- pyfaidx 0.7.2.1
- pyparsing 3.1.1
- pysam 0.21.0
- pytest-workflow 2.0.1
- pytest 7.4.0
- python-dateutil 2.8.2
- pytz 2023.3
- pyu2f 0.1.5
- questionary 2.0.0
- readline 6.2.4.1
- referencing 0.30.2
- refgenconf 0.12.2
- refgenie 0.12.1
- repoze.lru 0.7
- requests-cache 1.1.0
- requests-oauthlib 1.3.1
- requests 2.31.0
- rich-click 1.6.1
- rich 13.5.1
- rpds-py 0.9.2
- rsa 4.9
- ruamel.yaml.clib 0.2.7
- ruamel.yaml 0.17.32
- scipy 1.11.2
- setuptools 68.1.2
- shortuuid 1.0.11
- six 1.16.0
- smmap 3.0.5
- sortedcontainers 2.4.0
- sympy 1.12
- tables 3.8.0
- tabulate 0.9.0
- tensorboard-data-server 0.6.1
- tensorboard-plugin-wit 1.8.1
- tensorboard 2.8.0
- tensorflow-estimator 2.8.0
- tensorflow 2.8.0
- tensorflow_estimator 2.8.0
- termcolor 2.3.0
- tomli 2.0.1
- toolz 0.12.0
- torch 2.0.1
- tqdm 4.66.0
- typing_extensions 4.7.1
- tzdata 2023.3
- ubiquerg 0.6.3
- ujson 5.7.0
- ukkonen 1.0.1
- url-normalize 1.4.3
- urllib3 2.0.4
- veracitools 0.1.3
- virtualenv 20.24.3
- wcwidth 0.2.6
- webencodings 0.5.1
- whatshap 1.7
- wheel 0.41.2
- wrapt 1.15.0
- xopen 1.7.0
- yacman 0.9.1
- yarl 1.9.2
- zipp 3.16.2
- zipstream-new 1.1.8
- zstandard 0.19.0