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curiobioinformatics/curio-seeker-pipeline : 2022.10.24
Ubuntu 20.04.5 LTS
Latest release: about 1 year ago - 19,219 downloads - 1,523 dependencies
JSONDependencies
- decorator 5.1.1
- defusedxml 0.7.1
- devtools 0.9.0
- pip 19.2.3
- pip 22.2.2
- pip 22.3
- tqdm 4.64.1
- dataclasses 0.8
- debugpy 1.6.3
- Babel 2.10.3
- Click 7.1.2
- HeapDict 1.0.1
- Jinja2 3.1.2
- MarkupSafe 2.1.1
- Pillow 9.2.0
- PyJWT 2.6.0
- PyNaCl 1.5.0
- PySocks 1.7.1
- PyWavelets 1.3.0
- PyYAML 6.0
- Pygments 2.13.0
- Send2Trash 1.8.0
- Sphinx 1.8.5
- Sphinx 5.3.0
- Unidecode 1.3.6
- alabaster 0.7.12
- anndata 0.8.0
- ansiwrap 0.8.4
- anyio 3.6.2
- apipkg 2.0.0
- aplus 0.11.0
- argon2-cffi-bindings 21.2.0
- argon2-cffi 21.3.0
- astropy 5.1
- asttokens 2.0.8
- attrs 22.1.0
- backcall 0.2.0
- backports.functools-lru-cache 1.6.4
- bcrypt 3.2.2
- beautifulsoup4 4.11.1
- biopython 1.79
- black 22.10.0
- blake3 0.2.1
- bleach 5.0.1
- bokeh 2.4.3
- bqplot 0.12.36
- branca 0.5.0
- brotlipy 0.7.0
- bump2version 0.5.11
- bytecode 0.13.0.dev0
- cached-property 1.5.2
- cachetools 5.2.0
- certifi 2022.6.15
- certifi 2022.9.24
- cffi 1.15.1
- charset-normalizer 2.1.1
- click 8.1.3
- cloudpickle 2.2.0
- colorama 0.4.5
- colorlog 6.7.0
- commonmark 0.9.1
- conda-package-handling 1.8.1
- conda 4.14.0
- contourpy 1.0.5
- coverage 4.5.4
- croniter 0.3.36
- cryptography 37.0.4
- cryptography 38.0.2
- curio-seeker-pipeline 0.1.0
- cycler 0.11.0
- cytoolz 0.12.0
- dask 2022.10.0
- distributed 2022.10.0
- docker 6.0.0
- docutils 0.19
- entrypoints 0.4
- execnet 1.9.0
- executing 0.10.0
- fastapi 0.85.1
- fastjsonschema 2.16.2
- filelock 3.8.0
- flake8 3.7.8
- flaky 3.7.0
- flit_core 3.7.1
- fonttools 4.38.0
- freezegun 1.2.2
- frozendict 2.3.4
- fsspec 2022.10.0
- funcy 1.17
- future 0.18.2
- graphviz 0.20.1
- h5py 3.7.0
- html5lib 1.1
- humanize 4.4.0
- idna 3.3
- idna 3.4
- imagecodecs 2022.8.8
- imageio 2.22.0
- imagesize 1.4.1
- importlib-metadata 4.11.4
- importlib-resources 5.10.0
- iniconfig 1.1.1
- ipydatawidgets 4.3.2
- ipykernel 6.16.1
- ipyleaflet 0.17.2
- ipympl 0.9.2
- ipython-genutils 0.2.0
- ipython 8.5.0
- ipyvolume 0.6.0a8
- ipyvue 1.8.0
- ipyvuetify 1.8.4
- ipywebrtc 0.6.0
- ipywidgets 8.0.2
- jedi 0.18.1
- joblib 1.2.0
- jsonschema 4.16.0
- jupyter-client 7.3.4
- jupyter-server 1.21.0
- jupyter_core 4.11.1
- jupyterlab-pygments 0.2.2
- jupyterlab-widgets 3.0.3
- kiwisolver 1.4.4
- libmambapy 0.25.0
- llvmlite 0.39.1
- locket 1.0.0
- lz4 4.0.0
- mamba 0.25.0
- marshmallow-oneofschema 3.0.1
- marshmallow 3.18.0
- matplotlib-inline 0.1.6
- matplotlib 3.6.1
- mistune 2.0.4
- msgpack 1.0.4
- munkres 1.1.4
- mypy-extensions 0.4.3
- mypy 0.931
- natsort 8.2.0
- nbclassic 0.4.5
- nbclient 0.7.0
- nbconvert 7.2.2
- nbformat 5.7.0
- nest-asyncio 1.5.6
- networkx 2.8.7
- notebook 6.5.1
- notebook_shim 0.2.0
- numba 0.56.3
- numpy 1.23.4
- packaging 21.3
- pandas 1.5.1
- pandocfilters 1.5.0
- papermill 2.3.4
- paramiko 2.11.0
- parso 0.8.3
- partd 1.3.0
- pathspec 0.10.1
- patsy 0.5.3
- pendulum 2.1.2
- pexpect 4.8.0
- pickleshare 0.7.5
- pkgutil_resolve_name 1.3.10
- platformdirs 2.5.2
- pluggy 1.0.0
- prefect 1.4.0
- progressbar2 4.1.1
- prometheus-client 0.15.0
- prompt-toolkit 3.0.31
- psutil 5.9.3
- ptyprocess 0.7.0
- pure-eval 0.2.2
- py 1.11.0
- pyOpenSSL 22.0.0
- pyOpenSSL 22.1.0
- pyarrow 9.0.0
- pybktree 1.1
- pycosat 0.6.3
- pycparser 2.21
- pydantic 1.10.2
- pydata-sphinx-theme 0.9.0
- pyerfa 2.0.0.1
- pynndescent 0.5.7
- pyparsing 3.0.9
- pyrsistent 0.18.1
- pysam 0.19.1
- pytest-env 0.8.1
- pytest-forked 1.4.0
- pytest-xdist 2.5.0
- pytest 6.2.4
- pytest 7.1.3
- python-box 6.0.2
- python-dateutil 2.8.2
- python-slugify 6.1.2
- python-utils 3.3.3
- pythreejs 2.4.1
- pytz 2022.5
- pytzdata 2020.1
- pyzmq 24.0.1
- regex 2022.9.13
- requests 2.28.1
- responses 0.22.0
- rich-click 1.5.2
- rich 12.6.0
- ruamel-yaml-conda 0.15.80
- ruamel.yaml.clib 0.2.6
- ruamel.yaml 0.17.21
- scanpy 1.9.1
- scikit-image 0.19.3
- scikit-learn 1.1.2
- scipy 1.9.3
- seaborn 0.12.0
- session-info 1.0.0
- setuptools 65.2.0
- setuptools 65.5.0
- six 1.16.0
- sniffio 1.3.0
- snowballstemmer 2.2.0
- sortedcontainers 2.4.0
- soupsieve 2.3.2.post1
- sphinxcontrib-applehelp 1.0.2
- sphinxcontrib-devhelp 1.0.2
- sphinxcontrib-htmlhelp 2.0.0
- sphinxcontrib-jsmath 1.0.1
- sphinxcontrib-qthelp 1.0.3
- sphinxcontrib-serializinghtml 1.1.5
- stack-data 0.5.1
- starlette 0.20.4
- statsmodels 0.13.2
- stdlib-list 0.7.0
- tabulate 0.9.0
- tblib 1.7.0
- tenacity 8.1.0
- terminado 0.16.0
- testfixtures 7.0.0
- text-unidecode 1.3
- textwrap3 0.9.2
- threadpoolctl 3.1.0
- tifffile 2022.10.10
- tinycss2 1.2.1
- toml 0.10.2
- tomli 1.2.3
- tomli 2.0.1
- toolz 0.12.0
- tornado 6.1
- tox 3.14.0
- tqdm 4.64.0
- traitlets 5.5.0
- traittypes 0.2.1
- twine 1.14.0
- types-toml 0.10.8
- typing_extensions 4.4.0
- umap-learn 0.5.3
- umi-tools 1.1.2
- unicodedata2 14.0.0
- urllib3 1.26.11
- vaex-astro 0.9.2
- vaex-core 4.13.0
- vaex-hdf5 0.13.0
- vaex-jupyter 0.8.0
- vaex-ml 0.18.0
- vaex-server 0.8.1
- vaex-viz 0.5.4
- watchdog 0.9.0
- wcwidth 0.2.5
- webencodings 0.5.1
- websocket-client 1.4.1
- wheel 0.33.6
- wheel 0.37.1
- widgetsnbextension 4.0.3
- xarray 2022.10.0
- xyzservices 2022.9.0
- zict 2.2.0
- zipp 3.9.0
- ubuntu/adduser 3.118ubuntu2
- ubuntu/apt 2.0.9
- ubuntu/base-files 11ubuntu5.6
- ubuntu/base-passwd 3.5.47
- ubuntu/bash 5.0-6ubuntu1.2
- ubuntu/binutils-common 2.34-6ubuntu1.3
- ubuntu/binutils-x86-64-linux-gnu 2.34-6ubuntu1.3
- ubuntu/binutils 2.34-6ubuntu1.3
- ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
- ubuntu/build-essential 12.8ubuntu1.1
- ubuntu/bzip2 1.0.8-2
- ubuntu/ca-certificates 20211016~20.04.1
- ubuntu/coreutils 8.30-3ubuntu2
- ubuntu/cpp-9 9.4.0-1ubuntu1~20.04.1
- ubuntu/cpp 4:9.3.0-1ubuntu2
- ubuntu/dash 0.5.10.2-6
- ubuntu/debconf 1.5.73
- ubuntu/debianutils 4.9.1
- ubuntu/diffutils 1:3.7-3
- ubuntu/dirmngr 2.2.19-3ubuntu2.2
- ubuntu/dpkg-dev 1.19.7ubuntu3.2
- ubuntu/dpkg 1.19.7ubuntu3.2
- ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
- ubuntu/fakeroot 1.24-1
- ubuntu/fdisk 2.34-0.1ubuntu9.3
- ubuntu/findutils 4.7.0-1ubuntu1
- ubuntu/g -9 9.4.0-1ubuntu1~20.04.1
- ubuntu/g 4:9.3.0-1ubuntu2
- ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
- ubuntu/gcc-9-base 9.4.0-1ubuntu1~20.04.1
- ubuntu/gcc-9 9.4.0-1ubuntu1~20.04.1
- ubuntu/gcc 4:9.3.0-1ubuntu2
- ubuntu/git-man 1:2.25.1-1ubuntu3.6
- ubuntu/git 1:2.25.1-1ubuntu3.6
- ubuntu/gnupg-l10n 2.2.19-3ubuntu2.2
- ubuntu/gnupg-utils 2.2.19-3ubuntu2.2
- ubuntu/gnupg 2.2.19-3ubuntu2.2
- ubuntu/gpg-agent 2.2.19-3ubuntu2.2
- ubuntu/gpg-wks-client 2.2.19-3ubuntu2.2
- ubuntu/gpg-wks-server 2.2.19-3ubuntu2.2
- ubuntu/gpg 2.2.19-3ubuntu2.2
- ubuntu/gpgconf 2.2.19-3ubuntu2.2
- ubuntu/gpgsm 2.2.19-3ubuntu2.2
- ubuntu/gpgv 2.2.19-3ubuntu2.2
- ubuntu/grep 3.4-1
- ubuntu/gzip 1.10-0ubuntu4.1
- ubuntu/hostname 3.23
- ubuntu/init-system-helpers 1.57
- ubuntu/libacl1 2.2.53-6
- ubuntu/libalgorithm-diff-perl 1.19.03-2
- ubuntu/libalgorithm-diff-xs-perl 0.04-6
- ubuntu/libalgorithm-merge-perl 0.08-3
- ubuntu/libapt-pkg6.0 2.0.9
- ubuntu/libasan5 9.4.0-1ubuntu1~20.04.1
- ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.1
- ubuntu/libassuan0 2.5.3-7ubuntu2
- ubuntu/libatomic1 10.3.0-1ubuntu1~20.04
- ubuntu/libattr1 1:2.4.48-5
- ubuntu/libaudit-common 1:2.8.5-2ubuntu6
- ubuntu/libaudit1 1:2.8.5-2ubuntu6
- ubuntu/libbinutils 2.34-6ubuntu1.3
- ubuntu/libblkid1 2.34-0.1ubuntu9.3
- ubuntu/libbrotli1 1.0.7-6ubuntu0.1
- ubuntu/libbz2-1.0 1.0.8-2
- ubuntu/libc-bin 2.31-0ubuntu9.9
- ubuntu/libc-dev-bin 2.31-0ubuntu9.9
- ubuntu/libc6-dev 2.31-0ubuntu9.9
- ubuntu/libc6 2.31-0ubuntu9.9
- ubuntu/libcap-ng0 0.7.9-2.1build1
- ubuntu/libcc1-0 10.3.0-1ubuntu1~20.04
- ubuntu/libcom-err2 1.45.5-2ubuntu1.1
- ubuntu/libcrypt-dev 1:4.4.10-10ubuntu4
- ubuntu/libcrypt1 1:4.4.10-10ubuntu4
- ubuntu/libctf-nobfd0 2.34-6ubuntu1.3
- ubuntu/libctf0 2.34-6ubuntu1.3
- ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.13
- ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
- ubuntu/libdebconfclient0 0.251ubuntu1
- ubuntu/libdpkg-perl 1.19.7ubuntu3.2
- ubuntu/liberror-perl 0.17029-1
- ubuntu/libexpat1 2.2.9-1ubuntu0.4
- ubuntu/libext2fs2 1.45.5-2ubuntu1.1
- ubuntu/libfakeroot 1.24-1
- ubuntu/libfdisk1 2.34-0.1ubuntu9.3
- ubuntu/libffi7 3.3-4
- ubuntu/libfile-fcntllock-perl 0.22-3build4
- ubuntu/libgcc-9-dev 9.4.0-1ubuntu1~20.04.1
- ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
- ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
- ubuntu/libgdbm-compat4 1.18.1-5
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- ubuntu/libgmp10 2:6.2.0 dfsg-4
- ubuntu/libgnutls30 3.6.13-2ubuntu1.7
- ubuntu/libgomp1 10.3.0-1ubuntu1~20.04
- ubuntu/libgpg-error0 1.37-1
- ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.1
- ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.1
- ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.1
- ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.1
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- ubuntu/libsqlite3-0 3.31.1-4ubuntu0.4
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- ubuntu/make 4.2.1-1.2
- ubuntu/manpages-dev 5.05-1
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- ubuntu/readline-common 8.0-4
- ubuntu/sed 4.7-1
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- ubuntu/sysvinit-utils 2.96-2.1ubuntu1
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- ubuntu/ubuntu-keyring 2020.02.11.4
- ubuntu/util-linux 2.34-0.1ubuntu9.3
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- com.github.zafarkhaja:java-semver 0.9.0
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- com.google.errorprone:error_prone_annotations 2.11.0
- com.google.gson:gson 2.2.4
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- com.google.j2objc:j2objc-annotations 1.3
- com.googlecode.javaewah:JavaEWAH 1.1.13
- com.sun:activation 1.1.1
- com.sun:mail 1.4.7
- commons-codec:commons-codec 1.15
- commons-io:commons-io 2.11.0
- commons-lang:commons-lang 2.6
- failsafe:failsafe 3.1.0
- gpars:gpars 1.2.1
- gradle-wrapper:gradle-wrapper 2.10
- grengine:grengine 1.3.0
- jline:jline 2.9
- jrt-fs:jrt-fs 17.0.3-internal
- jsr166y:jsr166y 1.7.0
- logback-classic:logback-classic 1.2.11
- logback-core:logback-core 1.2.11
- nextflow:nextflow 22.10.0
- nextflow:nextflow 22.10.0-one
- nf-commons:nf-commons 22.10.0
- nf-httpfs:nf-httpfs 22.10.0
- org.apache.ivy:ivy 2.3.0
- org.checkerframework.checker.qual:checker-qual 3.12.0
- org.codehaus.groovy.json:groovy-json 3.0.13
- org.codehaus.groovy.nio:groovy-nio 3.0.13
- org.codehaus.groovy.templates:groovy-templates 3.0.13
- org.codehaus.groovy.xml:groovy-xml 3.0.13
- org.codehaus.groovy:groovy 3.0.13
- org.eclipse.jgit:org.eclipse.jgit 6.2.0.202206071550-r
- org.iq80.leveldb:leveldb-api 0.12
- org.iq80.leveldb:leveldb 0.12
- org.jsoup:jsoup 1.14.3
- org.multiverse:multiverse-core 0.7.0
- org.objenesis:objenesis 2.1
- org.pf4j:pf4j-update 2.3.0
- org.pf4j:pf4j 3.4.1
- org.slf4j:jcl-over-slf4j 1.7.36
- org.slf4j:jul-to-slf4j 1.7.36
- org.slf4j:log4j-over-slf4j 1.7.36
- org.slf4j:slf4j-api 1.7.36
- org.yaml:snakeyaml 1.30