nfcore/denovohybrid : dev

A Docker Image for the nf-core/denovohybrid pipeline

Latest release: almost 7 years ago - 1,026 downloads - 374 dependencies

JSON

Dependencies

base 3.5.1
compiler 3.5.1
datasets 3.5.1
grDevices 3.5.1
graphics 3.5.1
grid 3.5.1
markdown 0.8
methods 3.5.1
mime 0.7
parallel 3.5.1
splines 3.5.1
stats4 3.5.1
stats 3.5.1
tcltk 3.5.1
tools 3.5.1
translations 3.5.1
utils 3.5.1

debian/adduser 3.115
debian/adwaita-icon-theme 3.22.0-1 deb9u1
debian/apt 1.4.8
debian/at-spi2-core 2.22.0-6 deb9u1
debian/base-files 9.9 deb9u4
debian/base-passwd 3.5.43
debian/bash 4.4-5
debian/bc 1.06.95-9 b3
debian/bsdutils 1:2.29.2-1 deb9u1
debian/bzip2 1.0.6-8.1
debian/ca-certificates-java 20170929~deb9u3
debian/ca-certificates 20161130 nmu1
debian/coreutils 8.26-3
debian/curl 7.52.1-5 deb9u6
debian/dash 0.5.8-2.4
debian/dbus 1.10.28-0 deb9u1
debian/dconf-gsettings-backend 0.26.0-2 b1
debian/dconf-service 0.26.0-2 b1
debian/debconf 1.5.61
debian/debian-archive-keyring 2017.5
debian/debianutils 4.8.1.1
debian/diffutils 1:3.5-3
debian/dpkg 1.18.24
debian/e2fslibs 1.43.4-2
debian/e2fsprogs 1.43.4-2
debian/file 1:5.30-1 deb9u1
debian/findutils 4.6.0 git 20161106-2
debian/fontconfig-config 2.11.0-6.7
debian/fontconfig 2.11.0-6.7 b1
debian/fonts-dejavu-core 2.37-1
debian/fonts-dejavu-extra 2.37-1
debian/gawk 1:4.1.4 dfsg-1
debian/gcc-6-base 6.3.0-18 deb9u1
debian/git-man 1:2.11.0-3 deb9u3
debian/git 1:2.11.0-3 deb9u3
debian/glib-networking-common 2.50.0-1
debian/glib-networking-services 2.50.0-1 b1
debian/glib-networking 2.50.0-1 b1
debian/gnome-icon-theme 3.12.0-2
debian/gpgv 2.1.18-8~deb9u1
debian/grep 2.27-2
debian/gsettings-desktop-schemas 3.22.0-1
debian/gtk-update-icon-cache 3.22.11-1
debian/gzip 1.6-5 b1
debian/hicolor-icon-theme 0.15-1
debian/hostname 3.18 b1
debian/init-system-helpers 1.48
debian/iproute2 4.9.0-1 deb9u1
debian/iputils-ping 3:20161105-1
debian/java-common 0.58 deb9u1
debian/javascript-common 11
debian/krb5-locales 1.15-1 deb9u1
debian/less 481-2.1
debian/libacl1 2.2.52-3 b1
debian/libapparmor1 2.11.0-3 deb9u2
debian/libapr1 1.5.2-5
debian/libaprutil1 1.5.4-3
debian/libapt-pkg5.0 1.4.8
debian/libasound2-data 1.1.3-5
debian/libasound2 1.1.3-5
debian/libasyncns0 0.8-6
debian/libatk-bridge2.0-0 2.22.0-2
debian/libatk-wrapper-java-jni 0.33.3-13 deb9u1
debian/libatk-wrapper-java 0.33.3-13 deb9u1
debian/libatk1.0-0 2.22.0-1
debian/libatk1.0-data 2.22.0-1
debian/libatspi2.0-0 2.22.0-6 deb9u1
debian/libattr1 1:2.4.47-2 b2
debian/libaudit-common 1:2.6.7-2
debian/libaudit1 1:2.6.7-2
debian/libavahi-client3 0.6.32-2
debian/libavahi-common-data 0.6.32-2
debian/libavahi-common3 0.6.32-2
debian/libblkid1 2.29.2-1 deb9u1
debian/libbsd0 0.8.3-1
debian/libbz2-1.0 1.0.6-8.1
debian/libc-bin 2.24-11 deb9u3
debian/libc6 2.24-11 deb9u3
debian/libcairo-gobject2 1.14.8-1
debian/libcairo2 1.14.8-1
debian/libcap-ng0 0.7.7-3 b1
debian/libcap2 1:2.25-1
debian/libcolord2 1.3.3-2
debian/libcomerr2 1.43.4-2
debian/libcroco3 0.6.11-3
debian/libcups2 2.2.1-8 deb9u3
debian/libcurl3-gnutls 7.52.1-5 deb9u6
debian/libcurl3 7.52.1-5 deb9u6
debian/libdatrie1 0.2.10-4 b1
debian/libdb5.3 5.3.28-12 deb9u1
debian/libdbus-1-3 1.10.28-0 deb9u1
debian/libdconf1 0.26.0-2 b1
debian/libdebconfclient0 0.227
debian/libdrm-amdgpu1 2.4.74-1
debian/libdrm-intel1 2.4.74-1
debian/libdrm-nouveau2 2.4.74-1
debian/libdrm-radeon1 2.4.74-1
debian/libdrm2 2.4.74-1
debian/libedit2 3.1-20160903-3
debian/libegl1-mesa 13.0.6-1 b2
debian/libelf1 0.168-1
debian/libepoxy0 1.3.1-2
debian/liberror-perl 0.17024-1
debian/libexpat1 2.2.0-2 deb9u1
debian/libfdisk1 2.29.2-1 deb9u1
debian/libffi6 3.2.1-6
debian/libflac8 1.3.2-1
debian/libfontconfig1 2.11.0-6.7 b1
debian/libfontenc1 1:1.1.3-1 b2
debian/libfreetype6 2.6.3-3.2
debian/libgail-common 2.24.31-2
debian/libgail18 2.24.31-2
debian/libgbm1 13.0.6-1 b2
debian/libgcc1 1:6.3.0-18 deb9u1
debian/libgcrypt20 1.7.6-2 deb9u2
debian/libgdbm3 1.8.3-14
debian/libgdk-pixbuf2.0-0 2.36.5-2 deb9u2
debian/libgdk-pixbuf2.0-common 2.36.5-2 deb9u2
debian/libgif7 5.1.4-0.4
debian/libgl1-mesa-dri 13.0.6-1 b2
debian/libgl1-mesa-glx 13.0.6-1 b2
debian/libglapi-mesa 13.0.6-1 b2
debian/libglib2.0-0 2.50.3-2
debian/libglib2.0-data 2.50.3-2
debian/libgmp10 2:6.1.2 dfsg-1
debian/libgnutls30 3.5.8-5 deb9u3
debian/libgpg-error0 1.26-2
debian/libgpm2 1.20.4-6.2 b1
debian/libgraphite2-3 1.3.10-1
debian/libgssapi-krb5-2 1.15-1 deb9u1
debian/libgtk-3-0 3.22.11-1
debian/libgtk-3-bin 3.22.11-1
debian/libgtk-3-common 3.22.11-1
debian/libgtk2.0-0 2.24.31-2
debian/libgtk2.0-bin 2.24.31-2
debian/libgtk2.0-common 2.24.31-2
debian/libharfbuzz0b 1.4.2-1
debian/libhogweed4 3.3-1 b2
debian/libice6 2:1.0.9-2
debian/libicu57 57.1-6 deb9u2
debian/libidn11 1.33-1
debian/libidn2-0 0.16-1 deb9u1
debian/libjbig0 2.1-3.1 b2
debian/libjpeg62-turbo 1:1.5.1-2
debian/libjs-excanvas 0.r3-4
debian/libjson-glib-1.0-0 1.2.6-1
debian/libjson-glib-1.0-common 1.2.6-1
debian/libk5crypto3 1.15-1 deb9u1
debian/libkeyutils1 1.5.9-9
debian/libkrb5-3 1.15-1 deb9u1
debian/libkrb5support0 1.15-1 deb9u1
debian/liblcms2-2 2.8-4 deb9u1
debian/libldap-2.4-2 2.4.44 dfsg-5 deb9u1
debian/libldap-common 2.4.44 dfsg-5 deb9u1
debian/libllvm3.9 1:3.9.1-9
debian/liblz4-1 0.0~r131-2 b1
debian/liblzma5 5.2.2-1.2 b1
debian/libmagic-mgc 1:5.30-1 deb9u1
debian/libmagic1 1:5.30-1 deb9u1
debian/libmnl0 1.0.4-2
debian/libmount1 2.29.2-1 deb9u1
debian/libmpfr4 3.1.5-1
debian/libncurses5 6.0 20161126-1 deb9u2
debian/libncursesw5 6.0 20161126-1 deb9u2
debian/libnettle6 3.3-1 b2
debian/libnghttp2-14 1.18.1-1
debian/libnspr4 2:4.12-6
debian/libnss3 2:3.26.2-1.1 deb9u1
debian/libogg0 1.3.2-1
debian/libp11-kit0 0.23.3-2
debian/libpam-modules-bin 1.1.8-3.6
debian/libpam-modules 1.1.8-3.6
debian/libpam-runtime 1.1.8-3.6
debian/libpam0g 1.1.8-3.6
debian/libpango-1.0-0 1.40.5-1
debian/libpangocairo-1.0-0 1.40.5-1
debian/libpangoft2-1.0-0 1.40.5-1
debian/libpciaccess0 0.13.4-1 b2
debian/libpcre3 2:8.39-3
debian/libpcsclite1 1.8.20-1
debian/libperl5.24 5.24.1-3 deb9u3
debian/libpixman-1-0 0.34.0-1
debian/libpng16-16 1.6.28-1 deb9u1
debian/libpopt0 1.16-10 b2
debian/libprocps6 2:3.3.12-3 deb9u1
debian/libproxy1v5 0.4.14-2
debian/libpsl5 0.17.0-3
debian/libpulse0 10.0-1 deb9u1
debian/libpython-stdlib 2.7.13-2
debian/libpython2.7-minimal 2.7.13-2 deb9u2
debian/libpython2.7-stdlib 2.7.13-2 deb9u2
debian/libreadline7 7.0-3
debian/librest-0.7-0 0.8.0-2
debian/librsvg2-2 2.40.16-1 b1
debian/librsvg2-common 2.40.16-1 b1
debian/librtmp1 2.4 20151223.gitfa8646d.1-1 b1
debian/libsasl2-2 2.1.27~101-g0780600 dfsg-3
debian/libsasl2-modules-db 2.1.27~101-g0780600 dfsg-3
debian/libsasl2-modules 2.1.27~101-g0780600 dfsg-3
debian/libselinux1 2.6-3 b3
debian/libsemanage-common 2.6-2
debian/libsemanage1 2.6-2
debian/libsensors4 1:3.4.0-4
debian/libsepol1 2.6-2
debian/libserf-1-1 1.3.9-3
debian/libsigsegv2 2.10-5
debian/libsm6 2:1.2.2-1 b3
debian/libsmartcols1 2.29.2-1 deb9u1
debian/libsndfile1 1.0.27-3
debian/libsoup-gnome2.4-1 2.56.0-2 deb9u2
debian/libsoup2.4-1 2.56.0-2 deb9u2
debian/libsqlite3-0 3.16.2-5 deb9u1
debian/libss2 1.43.4-2
debian/libssh2-1 1.7.0-1
debian/libssl1.0.2 1.0.2l-2 deb9u3
debian/libssl1.1 1.1.0f-3 deb9u2
debian/libstdc 6 6.3.0-18 deb9u1
debian/libsvn1 1.9.5-1 deb9u1
debian/libsystemd0 232-25 deb9u3
debian/libtasn1-6 4.10-1.1 deb9u1
debian/libthai-data 0.1.26-1
debian/libthai0 0.1.26-1
debian/libtiff5 4.0.8-2 deb9u4
debian/libtinfo5 6.0 20161126-1 deb9u2
debian/libtxc-dxtn-s2tc 1.0 git20151227-2
debian/libudev1 232-25 deb9u3
debian/libunistring0 0.9.6 really0.9.3-0.1
debian/libustr-1.0-1 1.0.4-6
debian/libuuid1 2.29.2-1 deb9u1
debian/libvorbis0a 1.3.5-4 deb9u2
debian/libvorbisenc2 1.3.5-4 deb9u2
debian/libwayland-client0 1.12.0-1 deb9u1
debian/libwayland-cursor0 1.12.0-1 deb9u1
debian/libwayland-egl1-mesa 13.0.6-1 b2
debian/libwayland-server0 1.12.0-1 deb9u1
debian/libwrap0 7.6.q-26
debian/libx11-6 2:1.6.4-3
debian/libx11-data 2:1.6.4-3
debian/libx11-xcb1 2:1.6.4-3 deb9u1
debian/libxau6 1:1.0.8-1
debian/libxaw7 2:1.0.13-1 b2
debian/libxcb-dri2-0 1.12-1
debian/libxcb-dri3-0 1.12-1
debian/libxcb-glx0 1.12-1
debian/libxcb-present0 1.12-1
debian/libxcb-render0 1.12-1
debian/libxcb-shape0 1.12-1
debian/libxcb-shm0 1.12-1
debian/libxcb-sync1 1.12-1
debian/libxcb-xfixes0 1.12-1
debian/libxcb1 1.12-1
debian/libxcomposite1 1:0.4.4-2
debian/libxcursor1 1:1.1.14-1 deb9u2
debian/libxdamage1 1:1.1.4-2 b3
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1 b2
debian/libxfixes3 1:5.0.3-1
debian/libxft2 2.3.2-1 b2
debian/libxi6 2:1.7.9-1
debian/libxinerama1 2:1.1.3-1 b3
debian/libxkbcommon0 0.7.1-2~deb9u1
debian/libxml2 2.9.4 dfsg1-2.2 deb9u2
debian/libxmu6 2:1.1.2-2
debian/libxmuu1 2:1.1.2-2
debian/libxpm4 1:3.5.12-1
debian/libxrandr2 2:1.5.1-1
debian/libxrender1 1:0.9.10-1
debian/libxshmfence1 1.2-1 b2
debian/libxt6 1:1.1.5-1
debian/libxtst6 2:1.2.3-1
debian/libxv1 2:1.0.11-1
debian/libxxf86dga1 2:1.1.4-1 b3
debian/libxxf86vm1 1:1.1.4-1 b2
debian/login 1:4.4-4.1
debian/lsb-base 9.20161125
debian/mawk 1.3.3-17 b3
debian/mercurial-common 4.0-1 deb9u1
debian/mercurial 4.0-1 deb9u1
debian/mime-support 3.60
debian/mount 2.29.2-1 deb9u1
debian/multiarch-support 2.24-11 deb9u3
debian/ncurses-base 6.0 20161126-1 deb9u2
debian/ncurses-bin 6.0 20161126-1 deb9u2
debian/netbase 5.4
debian/openjdk-8-jre-headless 8u222-b10-1~deb9u1
debian/openjdk-8-jre 8u222-b10-1~deb9u1
debian/openssh-client 1:7.4p1-10 deb9u3
debian/openssl 1.1.0f-3 deb9u2
debian/passwd 1:4.4-4.1
debian/patch 2.7.5-1 b2
debian/perl-base 5.24.1-3 deb9u3
debian/perl-modules-5.24 5.24.1-3 deb9u3
debian/perl 5.24.1-3 deb9u3
debian/procps 2:3.3.12-3 deb9u1
debian/psmisc 22.21-2.1 b2
debian/publicsuffix 20180218.2049-0 deb9u1
debian/python-minimal 2.7.13-2
debian/python2.7-minimal 2.7.13-2 deb9u2
debian/python2.7 2.7.13-2 deb9u2
debian/python 2.7.13-2
debian/readline-common 7.0-3
debian/rename 0.20-4
debian/rsync 3.1.2-1 deb9u1
debian/sed 4.4-1
debian/sensible-utils 0.0.9 deb9u1
debian/sgml-base 1.29
debian/shared-mime-info 1.8-1
debian/subversion 1.9.5-1 deb9u1
debian/sysvinit-utils 2.88dsf-59.9
debian/tar 1.29b-1.1
debian/tcpd 7.6.q-26
debian/tini 0.18.0
debian/tzdata 2018d-0 deb9u1
debian/ucf 3.0036
debian/util-linux 2.29.2-1 deb9u1
debian/wget 1.18-5 deb9u2
debian/x11-common 1:7.7 19
debian/x11-utils 7.7 3 b1
debian/xauth 1:1.0.9-1 b2
debian/xdg-user-dirs 0.15-2 b1
debian/xkb-data 2.19-1 deb9u1
debian/xml-core 0.17
debian/xz-utils 5.2.2-1.2 b1
debian/zlib1g 1:1.2.8.dfsg-5

java 11.0.1 13-LTS
openssl 1.1.1
python 2.7.15
python 3.6.7

US_export_policy:US_export_policy *
charsets:charsets *
cisd-jhdf5:cisd-jhdf5 *
cldrdata:cldrdata *
com.sun:jce 1.8.0_222
com.sun:sunec 1.8.0_222
com.sun:sunjce_provider 1.8.0_222
com.sun:sunpkcs11 1.8.0_222
commons-io:commons-io 1.4
commons-lang:commons-lang 2.4
dnsns:dnsns *
icedtea-sound:icedtea-sound *
jaccess:jaccess *
jbzip2:jbzip2 0.9
jrt-fs:jrt-fs 11.0.1
jsse:jsse 1.8.0_222
local_policy:local_policy *
localedata:localedata *
management-agent:management-agent *
nashorn:nashorn 1.8.0_222-8u222-b10-1~deb9u1-b10
org.GNOME.Accessibility.AtkWrapper:java-atk-wrapper *
org.broadinstitute.pilon.Pilon:pilon 1.23
org.debian.security.UpdateCertificates:ca-certificates-java *
resources:resources 1.8.0_222
rt:rt 1.8.0_222
sam:sam 1.103
zipfs:zipfs 1.8.0_222

jquery-ui 1.12.1

flask 0.10.1