nfcore/tools : dev
Python package with helper tools for the nf-core community. https://nf-co.re/tools
Latest release: 6 months ago - 18,159 downloads - 404 dependencies
JSONDependencies
- debian/adduser 3.118
- debian/adwaita-icon-theme 3.30.1-1
- debian/apt 1.8.2.3
- debian/at-spi2-core 2.30.0-7
- debian/base-files 10.3 deb10u13
- debian/base-passwd 3.5.46
- debian/bash 5.0-4
- debian/bsdutils 1:2.33.1-0.1
- debian/ca-certificates-java 20190405
- debian/ca-certificates 20200601~deb10u2
- debian/coreutils 8.30-3
- debian/curl 7.64.0-4 deb10u5
- debian/dash 0.5.10.2-5
- debian/dbus-user-session 1.12.24-0 deb10u1
- debian/dbus 1.12.24-0 deb10u1
- debian/dconf-gsettings-backend 0.30.1-2
- debian/dconf-service 0.30.1-2
- debian/debconf 1.5.71 deb10u1
- debian/debian-archive-keyring 2019.1 deb10u1
- debian/debianutils 4.8.6.1
- debian/diffutils 1:3.7-3
- debian/dmsetup 2:1.02.155-3
- debian/dpkg 1.19.8
- debian/e2fsprogs 1.44.5-1 deb10u3
- debian/fdisk 2.33.1-0.1
- debian/findutils 4.6.0 git 20190209-2
- debian/fontconfig-config 2.13.1-2
- debian/fontconfig 2.13.1-2
- debian/fonts-dejavu-core 2.37-1
- debian/fonts-dejavu-extra 2.37-1
- debian/gcc-8-base 8.3.0-6
- debian/git-man 1:2.20.1-2 deb10u8
- debian/git 1:2.20.1-2 deb10u8
- debian/glib-networking-common 2.58.0-2 deb10u2
- debian/glib-networking-services 2.58.0-2 deb10u2
- debian/glib-networking 2.58.0-2 deb10u2
- debian/gpgv 2.2.12-1 deb10u2
- debian/grep 3.3-1
- debian/gsettings-desktop-schemas 3.28.1-1
- debian/gtk-update-icon-cache 3.24.5-1
- debian/gzip 1.9-3 deb10u1
- debian/hicolor-icon-theme 0.17-2
- debian/hostname 3.21
- debian/init-system-helpers 1.56 nmu1
- debian/java-common 0.71
- debian/krb5-locales 1.17-3 deb10u5
- debian/less 487-0.1 b1
- debian/libacl1 2.2.53-4
- debian/libapparmor1 2.13.2-10
- debian/libapt-pkg5.0 1.8.2.3
- debian/libargon2-1 0~20171227-0.2
- debian/libasound2-data 1.1.8-1
- debian/libasound2 1.1.8-1
- debian/libatk-bridge2.0-0 2.30.0-5
- debian/libatk-wrapper-java-jni 0.33.3-22 deb10u1
- debian/libatk-wrapper-java 0.33.3-22 deb10u1
- debian/libatk1.0-0 2.30.0-2
- debian/libatk1.0-data 2.30.0-2
- debian/libatspi2.0-0 2.30.0-7
- debian/libattr1 1:2.4.48-4
- debian/libaudit-common 1:2.8.4-3
- debian/libaudit1 1:2.8.4-3
- debian/libavahi-client3 0.7-4 deb10u1
- debian/libavahi-common-data 0.7-4 deb10u1
- debian/libavahi-common3 0.7-4 deb10u1
- debian/libblkid1 2.33.1-0.1
- debian/libbsd0 0.9.1-2 deb10u1
- debian/libbz2-1.0 1.0.6-9.2~deb10u2
- debian/libc-bin 2.28-10 deb10u2
- debian/libc6 2.28-10 deb10u2
- debian/libcairo-gobject2 1.16.0-4 deb10u1
- debian/libcairo2 1.16.0-4 deb10u1
- debian/libcap-ng0 0.7.9-2
- debian/libcap2 1:2.25-2
- debian/libcolord2 1.4.3-4
- debian/libcom-err2 1.44.5-1 deb10u3
- debian/libcroco3 0.6.12-3
- debian/libcryptsetup12 2:2.1.0-5 deb10u2
- debian/libcups2 2.2.10-6 deb10u6
- debian/libcurl3-gnutls 7.64.0-4 deb10u5
- debian/libcurl4 7.64.0-4 deb10u5
- debian/libdatrie1 0.2.12-2
- debian/libdb5.3 5.3.28 dfsg1-0.5
- debian/libdbus-1-3 1.12.24-0 deb10u1
- debian/libdconf1 0.30.1-2
- debian/libdebconfclient0 0.249
- debian/libdevmapper1.02.1 2:1.02.155-3
- debian/libdrm-amdgpu1 2.4.97-1
- debian/libdrm-common 2.4.97-1
- debian/libdrm-intel1 2.4.97-1
- debian/libdrm-nouveau2 2.4.97-1
- debian/libdrm-radeon1 2.4.97-1
- debian/libdrm2 2.4.97-1
- debian/libedit2 3.1-20181209-1
- debian/libelf1 0.176-1.1
- debian/libepoxy0 1.5.3-0.1
- debian/liberror-perl 0.17027-2
- debian/libexpat1 2.2.6-2 deb10u6
- debian/libext2fs2 1.44.5-1 deb10u3
- debian/libfdisk1 2.33.1-0.1
- debian/libffi6 3.2.1-9
- debian/libfontconfig1 2.13.1-2
- debian/libfontenc1 1:1.1.3-1 b2
- debian/libfreetype6 2.9.1-3 deb10u3
- debian/libfribidi0 1.0.5-3.1 deb10u2
- debian/libgail-common 2.24.32-3
- debian/libgail18 2.24.32-3
- debian/libgcc1 1:8.3.0-6
- debian/libgcrypt20 1.8.4-5 deb10u1
- debian/libgdbm-compat4 1.18.1-4
- debian/libgdbm6 1.18.1-4
- debian/libgdk-pixbuf2.0-0 2.38.1 dfsg-1
- debian/libgdk-pixbuf2.0-bin 2.38.1 dfsg-1
- debian/libgdk-pixbuf2.0-common 2.38.1 dfsg-1
- debian/libgif7 5.1.4-3 deb10u1
- debian/libgl1-mesa-dri 18.3.6-2 deb10u1
- debian/libgl1 1.1.0-1
- debian/libglapi-mesa 18.3.6-2 deb10u1
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- debian/libglvnd0 1.1.0-1
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- debian/libglx0 1.1.0-1
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- debian/libgnutls30 3.6.7-4 deb10u10
- debian/libgpg-error0 1.35-1
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- debian/libgssapi-krb5-2 1.17-3 deb10u5
- debian/libgtk-3-0 3.24.5-1
- debian/libgtk-3-bin 3.24.5-1
- debian/libgtk-3-common 3.24.5-1
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- debian/libgtk2.0-common 2.24.32-3
- debian/libharfbuzz0b 2.3.1-1
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- debian/libice6 2:1.0.9-2
- debian/libicu63 63.1-6 deb10u3
- debian/libidn11 1.33-2.2
- debian/libidn2-0 2.0.5-1 deb10u1
- debian/libip4tc0 1.8.2-4
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- debian/libjpeg62-turbo 1:1.5.2-2 deb10u1
- debian/libjson-c3 0.12.1 ds-2 deb10u1
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- debian/libjson-glib-1.0-common 1.4.4-2
- debian/libk5crypto3 1.17-3 deb10u5
- debian/libkeyutils1 1.6-6
- debian/libkmod2 26-1
- debian/libkrb5-3 1.17-3 deb10u5
- debian/libkrb5support0 1.17-3 deb10u5
- debian/liblcms2-2 2.9-3
- debian/libldap-2.4-2 2.4.47 dfsg-3 deb10u7
- debian/libldap-common 2.4.47 dfsg-3 deb10u7
- debian/libllvm7 1:7.0.1-8 deb10u2
- debian/liblz4-1 1.8.3-1 deb10u1
- debian/liblzma5 5.2.4-1 deb10u1
- debian/libmount1 2.33.1-0.1
- debian/libncursesw6 6.1 20181013-2 deb10u3
- debian/libnettle6 3.4.1-1 deb10u1
- debian/libnghttp2-14 1.36.0-2 deb10u1
- debian/libnspr4 2:4.20-1
- debian/libnss-systemd 241-7~deb10u8
- debian/libnss3 2:3.42.1-1 deb10u6
- debian/libp11-kit0 0.23.15-2 deb10u1
- debian/libpam-modules-bin 1.3.1-5
- debian/libpam-modules 1.3.1-5
- debian/libpam-runtime 1.3.1-5
- debian/libpam-systemd 241-7~deb10u8
- debian/libpam0g 1.3.1-5
- debian/libpango-1.0-0 1.42.4-8~deb10u1
- debian/libpangocairo-1.0-0 1.42.4-8~deb10u1
- debian/libpangoft2-1.0-0 1.42.4-8~deb10u1
- debian/libpciaccess0 0.14-1
- debian/libpcre2-8-0 10.32-5 deb10u1
- debian/libpcre3 2:8.39-12
- debian/libpcsclite1 1.8.24-1
- debian/libperl5.28 5.28.1-6 deb10u1
- debian/libpixman-1-0 0.36.0-1 deb10u1
- debian/libpng16-16 1.6.36-6
- debian/libproxy1v5 0.4.15-5 deb10u1
- debian/libpsl5 0.20.2-2
- debian/libreadline7 7.0-5
- debian/librest-0.7-0 0.8.1-1
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- debian/librsvg2-common 2.44.10-2.1 deb10u3
- debian/librtmp1 2.4 20151223.gitfa8646d.1-2
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- debian/libsasl2-modules-db 2.1.27 dfsg-1 deb10u2
- debian/libsasl2-modules 2.1.27 dfsg-1 deb10u2
- debian/libseccomp2 2.3.3-4
- debian/libselinux1 2.8-1 b1
- debian/libsemanage-common 2.8-2
- debian/libsemanage1 2.8-2
- debian/libsensors-config 1:3.5.0-3
- debian/libsensors5 1:3.5.0-3
- debian/libsepol1 2.8-1
- debian/libsm6 2:1.2.3-1
- debian/libsmartcols1 2.33.1-0.1
- debian/libsoup-gnome2.4-1 2.64.2-2
- debian/libsoup2.4-1 2.64.2-2
- debian/libsqlite3-0 3.27.2-3 deb10u2
- debian/libss2 1.44.5-1 deb10u3
- debian/libssh2-1 1.8.0-2.1
- debian/libssl1.1 1.1.1n-0 deb10u4
- debian/libstdc 6 8.3.0-6
- debian/libsystemd0 241-7~deb10u8
- debian/libtasn1-6 4.13-3 deb10u1
- debian/libthai-data 0.1.28-2
- debian/libthai0 0.1.28-2
- debian/libtiff5 4.1.0 git191117-2~deb10u7
- debian/libtinfo6 6.1 20181013-2 deb10u3
- debian/libudev1 241-7~deb10u8
- debian/libunistring2 0.9.10-1
- debian/libuuid1 2.33.1-0.1
- debian/libwayland-client0 1.16.0-1
- debian/libwayland-cursor0 1.16.0-1
- debian/libwayland-egl1 1.16.0-1
- debian/libwebp6 0.6.1-2 deb10u1
- debian/libx11-6 2:1.6.7-1 deb10u2
- debian/libx11-data 2:1.6.7-1 deb10u2
- debian/libx11-xcb1 2:1.6.7-1 deb10u2
- debian/libxau6 1:1.0.8-1 b2
- debian/libxaw7 2:1.0.13-1 b2
- debian/libxcb-dri2-0 1.13.1-2
- debian/libxcb-dri3-0 1.13.1-2
- debian/libxcb-glx0 1.13.1-2
- debian/libxcb-present0 1.13.1-2
- debian/libxcb-render0 1.13.1-2
- debian/libxcb-shape0 1.13.1-2
- debian/libxcb-shm0 1.13.1-2
- debian/libxcb-sync1 1.13.1-2
- debian/libxcb1 1.13.1-2
- debian/libxcomposite1 1:0.4.4-2
- debian/libxcursor1 1:1.1.15-2
- debian/libxdamage1 1:1.1.4-3 b3
- debian/libxdmcp6 1:1.1.2-3
- debian/libxext6 2:1.3.3-1 b2
- debian/libxfixes3 1:5.0.3-1
- debian/libxft2 2.3.2-2
- debian/libxi6 2:1.7.9-1
- debian/libxinerama1 2:1.1.4-2
- debian/libxkbcommon0 0.8.2-1
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- debian/libxmu6 2:1.1.2-2 b3
- debian/libxmuu1 2:1.1.2-2 b3
- debian/libxpm4 1:3.5.12-1
- debian/libxrandr2 2:1.5.1-1
- debian/libxrender1 1:0.9.10-1
- debian/libxshmfence1 1.3-1
- debian/libxt6 1:1.1.5-1 b3
- debian/libxtst6 2:1.2.3-1
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- debian/libzstd1 1.3.8 dfsg-3 deb10u2
- debian/login 1:4.5-1.1
- debian/lsb-base 10.2019051400
- debian/mawk 1.3.3-17 b3
- debian/mount 2.33.1-0.1
- debian/ncurses-base 6.1 20181013-2 deb10u3
- debian/ncurses-bin 6.1 20181013-2 deb10u3
- debian/netbase 5.6
- debian/openjdk-11-jre-headless 11.0.18 10-1~deb10u1
- debian/openjdk-11-jre 11.0.18 10-1~deb10u1
- debian/openssh-client 1:7.9p1-10 deb10u2
- debian/openssl 1.1.1n-0 deb10u4
- debian/passwd 1:4.5-1.1
- debian/patch 2.7.6-3 deb10u1
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- debian/perl-modules-5.28 5.28.1-6 deb10u1
- debian/perl 5.28.1-6 deb10u1
- debian/publicsuffix 20220811.1734-0 deb10u1
- debian/readline-common 7.0-5
- debian/sed 4.7-1
- debian/sensible-utils 0.0.12
- debian/shared-mime-info 1.10-1
- debian/systemd-sysv 241-7~deb10u8
- debian/systemd 241-7~deb10u8
- debian/sysvinit-utils 2.93-8
- debian/tar 1.30 dfsg-6
- debian/tzdata 2021a-0 deb10u8
- debian/ucf 3.0038 nmu1
- debian/util-linux 2.33.1-0.1
- debian/x11-common 1:7.7 19
- debian/x11-utils 7.7 4
- debian/xauth 1:1.0.10-1
- debian/xdg-user-dirs 0.17-2
- debian/xkb-data 2.26-2
- debian/zlib1g 1:1.2.11.dfsg-1 deb10u2
- questionary 1.10.0
- refgenconf 0.12.2
- refgenie 0.12.1
- repoze.lru 0.7
- requests-cache 1.0.0
- requests 2.28.2
- rich-click 1.6.1
- GitPython 3.1.31
- Jinja2 3.1.2
- Markdown 3.4.2
- MarkupSafe 2.1.2
- PyYAML 6.0
- Pygments 2.14.0
- Routes 2.5.1
- attmap 0.13.2
- attrs 22.2.0
- bleach 6.0.0
- boltons 23.0.0
- cattrs 22.2.0
- certifi 2022.12.7
- cfgv 3.3.1
- charset-normalizer 3.1.0
- click 8.1.3
- distlib 0.3.6
- docutils 0.19
- exceptiongroup 1.1.1
- filelock 3.10.2
- filetype 1.2.0
- future 0.18.3
- galaxy-containers 22.1.1
- galaxy-tool-util 22.1.5
- galaxy-util 22.1.2
- gitdb 4.0.10
- html5lib 1.1
- identify 2.5.21
- idna 3.4
- importlib-metadata 6.1.0
- importlib-resources 5.12.0
- iniconfig 2.0.0
- jsonschema 4.17.3
- logmuse 0.2.7
- lxml 4.9.2
- markdown-it-py 2.2.0
- mdurl 0.1.2
- nf-core 2.8.dev0
- nodeenv 1.7.0
- numpy 1.24.2
- oyaml 1.0
- packaging 21.3
- pandas 1.5.3
- pip 23.0.1
- piper 0.12.3
- pkgutil_resolve_name 1.3.10
- platformdirs 3.1.1
- pluggy 1.0.0
- pre-commit 3.2.0
- prompt-toolkit 3.0.38
- psutil 5.9.4
- pycryptodome 3.17
- pydantic 1.10.7
- pyfaidx 0.7.2.1
- pyparsing 3.0.9
- pyrsistent 0.19.3
- pytest-workflow 2.0.1
- pytest 7.2.2
- python-dateutil 2.8.2
- pytz 2022.7.1
- rich 13.3.2
- setuptools 56.0.0
- six 1.16.0
- smmap 5.0.0
- sortedcontainers 2.4.0
- tabulate 0.9.0
- tomli 2.0.1
- tqdm 4.65.0
- typing_extensions 4.5.0
- ubiquerg 0.6.2
- url-normalize 1.4.3
- urllib3 1.26.15
- virtualenv 20.21.0
- wcwidth 0.2.6
- webencodings 0.5.1
- wheel 0.36.2
- yacman 0.9.0
- zipp 3.15.0
- zipstream-new 1.1.8
- python 3.8.9
- com.beust:jcommander 1.35
- com.damnhandy:handy-uri-templates 2.1.6
- com.esotericsoftware.kryo:kryo 2.24.0
- com.esotericsoftware.reflectasm:reflectasm 1.09
- com.github.erosb:everit-json-schema 1.10.0
- com.github.zafarkhaja:java-semver 0.9.0
- com.google.code.findbugs:jsr305 3.0.2
- com.google.errorprone:error_prone_annotations 2.11.0
- com.google.gson:gson 2.2.4
- com.google.guava:failureaccess 1.0.1
- com.google.guava:guava 31.1-jre
- com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
- com.google.j2objc:j2objc-annotations 1.3
- com.google.re2j:re2j 1.1
- com.googlecode.javaewah:JavaEWAH 1.1.13
- com.sun:activation 1.1.1
- com.sun:mail 1.4.7
- commons-beanutils:commons-beanutils 1.9.3
- commons-codec:commons-codec 1.15
- commons-collections:commons-collections 3.2.2
- commons-digester:commons-digester 1.8.1
- commons-io:commons-io 2.11.0
- commons-lang:commons-lang 2.6
- commons-logging:commons-logging 1.2
- commons-validator:commons-validator 1.6
- failsafe:failsafe 3.1.0
- gpars:gpars 1.2.1
- grengine:grengine 1.3.0
- jline:jline 2.9
- joda-time:joda-time 2.9.4
- jrt-fs:jrt-fs 11.0.18
- jsr166y:jsr166y 1.7.0
- logback-classic:logback-classic 1.2.11
- logback-core:logback-core 1.2.11
- nextflow:nextflow 22.10.7
- nextflow:nextflow 22.10.7-one
- nf-commons:nf-commons 22.10.7
- nf-httpfs:nf-httpfs 22.10.7
- nfcore_external_java_deps:nfcore_external_java_deps *
- org.GNOME.Accessibility.AtkWrapper:java-atk-wrapper *
- org.apache.ivy:ivy 2.3.0
- org.checkerframework.checker.qual:checker-qual 3.12.0
- org.codehaus.groovy.json:groovy-json 3.0.13
- org.codehaus.groovy.nio:groovy-nio 3.0.13
- org.codehaus.groovy.templates:groovy-templates 3.0.13
- org.codehaus.groovy.xml:groovy-xml 3.0.13
- org.codehaus.groovy:groovy 3.0.13
- org.debian.security.UpdateCertificates:ca-certificates-java *
- org.eclipse.jgit:org.eclipse.jgit 6.2.0.202206071550-r
- org.iq80.leveldb:leveldb-api 0.12
- org.iq80.leveldb:leveldb 0.12
- org.json:json 20180813
- org.jsoup:jsoup 1.14.3
- org.multiverse:multiverse-core 0.7.0
- org.objenesis:objenesis 2.1
- org.pf4j:pf4j-update 2.3.0
- org.pf4j:pf4j 3.4.1
- org.slf4j:jcl-over-slf4j 1.7.36
- org.slf4j:jul-to-slf4j 1.7.36
- org.slf4j:log4j-over-slf4j 1.7.36
- org.slf4j:slf4j-api 1.7.36
- org.yaml:snakeyaml 1.30
Distribution Information
- Pretty Name
Debian GNU/Linux 10 (buster)- Name
Debian GNU/Linux- Id
debian- Version
10 (buster)- Version
10- Version Codename
buster- Home Url
https://www.debian.org/- Support Url
https://www.debian.org/support- Bug Report Url
https://bugs.debian.org/