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vanessa/snakemake.scif : latest
Tutorial to show using Snakemake with a Scientific Filesystem for an analysis
Latest release: over 5 years ago - 118 downloads - 320 dependencies
JSONDependencies
- debian/adduser 3.115
- debian/apt 1.4.8
- debian/base-files 9.9 deb9u5
- debian/base-passwd 3.5.43
- debian/bash 4.4-5
- debian/binutils 2.28-5
- debian/bsdutils 1:2.29.2-1 deb9u1
- debian/build-essential 12.3
- debian/bzip2-doc 1.0.6-8.1
- debian/bzip2 1.0.6-8.1
- debian/ca-certificates 20161130 nmu1 deb9u1
- debian/coreutils 8.26-3
- debian/cpp-6 6.3.0-18 deb9u1
- debian/cpp 4:6.3.0-4
- debian/curl 7.52.1-5 deb9u7
- debian/dash 0.5.8-2.4
- debian/debconf 1.5.61
- debian/debian-archive-keyring 2017.5
- debian/debianutils 4.8.1.1
- debian/diffutils 1:3.5-3
- debian/dirmngr 2.1.18-8~deb9u4
- debian/dpkg-dev 1.18.25
- debian/dpkg 1.18.25
- debian/e2fslibs 1.43.4-2
- debian/e2fsprogs 1.43.4-2
- debian/fakeroot 1.21-3.1
- debian/file 1:5.30-1 deb9u2
- debian/findutils 4.6.0 git 20161106-2
- debian/fontconfig-config 2.11.0-6.7
- debian/fontconfig 2.11.0-6.7 b1
- debian/fonts-dejavu-core 2.37-1
- debian/fonts-liberation 1:1.07.4-2
- debian/g -6 6.3.0-18 deb9u1
- debian/g 4:6.3.0-4
- debian/gcc-6-base 6.3.0-18 deb9u1
- debian/gcc-6 6.3.0-18 deb9u1
- debian/gcc 4:6.3.0-4
- debian/gdb 7.12-6
- debian/git-man 1:2.11.0-3 deb9u3
- debian/git 1:2.11.0-3 deb9u4
- debian/gnupg-agent 2.1.18-8~deb9u4
- debian/gnupg-l10n 2.1.18-8~deb9u4
- debian/gnupg 2.1.18-8~deb9u4
- debian/gpgv 2.1.18-8~deb9u2
- debian/graphviz 2.38.0-17
- debian/grep 2.27-2
- debian/gzip 1.6-5 b1
- debian/hostname 3.18 b1
- debian/init-system-helpers 1.48
- debian/iproute2 4.9.0-1 deb9u1
- debian/iputils-ping 3:20161105-1
- debian/krb5-locales 1.15-1 deb9u1
- debian/less 481-2.1
- debian/libacl1 2.2.52-3 b1
- debian/libalgorithm-diff-perl 1.19.03-1
- debian/libalgorithm-diff-xs-perl 0.04-4 b2
- debian/libalgorithm-merge-perl 0.08-3
- debian/libann0 1.1.2 doc-6
- debian/libapt-pkg5.0 1.4.8
- debian/libasan3 6.3.0-18 deb9u1
- debian/libassuan0 2.4.3-2
- debian/libatomic1 6.3.0-18 deb9u1
- debian/libattr1 1:2.4.47-2 b2
- debian/libaudit-common 1:2.6.7-2
- debian/libaudit1 1:2.6.7-2
- debian/libbabeltrace-ctf1 1.5.1-1
- debian/libbabeltrace1 1.5.1-1
- debian/libblkid1 2.29.2-1 deb9u1
- debian/libbsd0 0.8.3-1
- debian/libbz2-1.0 1.0.6-8.1
- debian/libbz2-dev 1.0.6-8.1
- debian/libc-bin 2.24-11 deb9u3
- debian/libc-dev-bin 2.24-11 deb9u4
- debian/libc6-dbg 2.24-11 deb9u4
- debian/libc6-dev 2.24-11 deb9u4
- debian/libc6 2.24-11 deb9u4
- debian/libcairo2 1.14.8-1
- debian/libcap-ng0 0.7.7-3 b1
- debian/libcap2 1:2.25-1
- debian/libcc1-0 6.3.0-18 deb9u1
- debian/libcdt5 2.38.0-17
- debian/libcgraph6 2.38.0-17
- debian/libcilkrts5 6.3.0-18 deb9u1
- debian/libcomerr2 1.43.4-2
- debian/libcurl3-gnutls 7.52.1-5 deb9u7
- debian/libcurl3 7.52.1-5 deb9u7
- debian/libdatrie1 0.2.10-4 b1
- debian/libdb5.3 5.3.28-12 deb9u1
- debian/libdebconfclient0 0.227
- debian/libdpkg-perl 1.18.25
- debian/libdw1 0.168-1
- debian/libedit2 3.1-20160903-3
- debian/libelf1 0.168-1
- debian/liberror-perl 0.17024-1
- debian/libexpat1 2.2.0-2 deb9u1
- debian/libfakeroot 1.21-3.1
- debian/libfdisk1 2.29.2-1 deb9u1
- debian/libffi6 3.2.1-6
- debian/libfile-fcntllock-perl 0.22-3 b2
- debian/libfontconfig1 2.11.0-6.7 b1
- debian/libfreetype6 2.6.3-3.2
- debian/libgcc-6-dev 6.3.0-18 deb9u1
- debian/libgcc1 1:6.3.0-18 deb9u1
- debian/libgcrypt20 1.7.6-2 deb9u3
- debian/libgd3 2.2.4-2 deb9u4
- debian/libgdbm3 1.8.3-14
- debian/libglib2.0-0 2.50.3-2
- debian/libglib2.0-data 2.50.3-2
- debian/libgmp10 2:6.1.2 dfsg-1
- debian/libgnutls30 3.5.8-5 deb9u3
- debian/libgomp1 6.3.0-18 deb9u1
- debian/libgpg-error0 1.26-2
- debian/libgpm2 1.20.4-6.2 b1
- debian/libgraphite2-3 1.3.10-1
- debian/libgssapi-krb5-2 1.15-1 deb9u1
- debian/libgts-0.7-5 0.7.6 darcs121130-4
- debian/libgts-bin 0.7.6 darcs121130-4
- debian/libgvc6 2.38.0-17
- debian/libgvpr2 2.38.0-17
- debian/libharfbuzz0b 1.4.2-1
- debian/libhogweed4 3.3-1 b2
- debian/libice6 2:1.0.9-2
- debian/libicu57 57.1-6 deb9u2
- debian/libidn11 1.33-1
- debian/libidn2-0 0.16-1 deb9u1
- debian/libisl15 0.18-1
- debian/libitm1 6.3.0-18 deb9u1
- debian/libjbig0 2.1-3.1 b2
- debian/libjpeg62-turbo 1:1.5.1-2
- debian/libk5crypto3 1.15-1 deb9u1
- debian/libkeyutils1 1.5.9-9
- debian/libkrb5-3 1.15-1 deb9u1
- debian/libkrb5support0 1.15-1 deb9u1
- debian/libksba8 1.3.5-2
- debian/libldap-2.4-2 2.4.44 dfsg-5 deb9u2
- debian/libldap-common 2.4.44 dfsg-5 deb9u2
- debian/liblocale-gettext-perl 1.07-3 b1
- debian/liblsan0 6.3.0-18 deb9u1
- debian/libltdl7 2.4.6-2
- debian/liblz4-1 0.0~r131-2 b1
- debian/liblzma-dev 5.2.2-1.2 b1
- debian/liblzma5 5.2.2-1.2 b1
- debian/libmagic-mgc 1:5.30-1 deb9u2
- debian/libmagic1 1:5.30-1 deb9u2
- debian/libmnl0 1.0.4-2
- debian/libmount1 2.29.2-1 deb9u1
- debian/libmpc3 1.0.3-1 b2
- debian/libmpdec2 2.4.2-1
- debian/libmpfr4 3.1.5-1
- debian/libmpx2 6.3.0-18 deb9u1
- debian/libncurses5-dev 6.0 20161126-1 deb9u2
- debian/libncurses5 6.0 20161126-1 deb9u2
- debian/libncursesw5 6.0 20161126-1 deb9u2
- debian/libnettle6 3.3-1 b2
- debian/libnghttp2-14 1.18.1-1
- debian/libnpth0 1.3-1
- debian/libp11-kit0 0.23.3-2
- debian/libpam-modules-bin 1.1.8-3.6
- debian/libpam-modules 1.1.8-3.6
- debian/libpam-runtime 1.1.8-3.6
- debian/libpam0g 1.1.8-3.6
- debian/libpango-1.0-0 1.40.5-1
- debian/libpangocairo-1.0-0 1.40.5-1
- debian/libpangoft2-1.0-0 1.40.5-1
- debian/libpathplan4 2.38.0-17
- debian/libpcre3 2:8.39-3
- debian/libperl5.24 5.24.1-3 deb9u4
- debian/libpixman-1-0 0.34.0-1
- debian/libpng16-16 1.6.28-1
- debian/libpopt0 1.16-10 b2
- debian/libpsl5 0.17.0-3
- debian/libpython3.5-minimal 3.5.3-1 deb9u1
- debian/libpython3.5-stdlib 3.5.3-1 deb9u1
- debian/libpython3.5 3.5.3-1 deb9u1
- debian/libquadmath0 6.3.0-18 deb9u1
- debian/libreadline7 7.0-3
- debian/librtmp1 2.4 20151223.gitfa8646d.1-1 b1
- debian/libsasl2-2 2.1.27~101-g0780600 dfsg-3
- debian/libsasl2-modules-db 2.1.27~101-g0780600 dfsg-3
- debian/libsasl2-modules 2.1.27~101-g0780600 dfsg-3
- debian/libselinux1 2.6-3 b3
- debian/libsemanage-common 2.6-2
- debian/libsemanage1 2.6-2
- debian/libsepol1 2.6-2
- debian/libsm6 2:1.2.2-1 b3
- debian/libsmartcols1 2.29.2-1 deb9u1
- debian/libsqlite3-0 3.16.2-5 deb9u1
- debian/libss2 1.43.4-2
- debian/libssh2-1 1.7.0-1
- debian/libssl1.0.2 1.0.2l-2 deb9u3
- debian/libssl1.1 1.1.0f-3 deb9u2
- debian/libstdc -6-dev 6.3.0-18 deb9u1
- debian/libstdc 6 6.3.0-18 deb9u1
- debian/libsystemd0 232-25 deb9u4
- debian/libtasn1-6 4.10-1.1 deb9u1
- debian/libthai-data 0.1.26-1
- debian/libthai0 0.1.26-1
- debian/libtiff5 4.0.8-2 deb9u4
- debian/libtinfo-dev 6.0 20161126-1 deb9u2
- debian/libtinfo5 6.0 20161126-1 deb9u2
- debian/libtsan0 6.3.0-18 deb9u1
- debian/libubsan0 6.3.0-18 deb9u1
- debian/libudev1 232-25 deb9u4
- debian/libunistring0 0.9.6 really0.9.3-0.1
- debian/libustr-1.0-1 1.0.4-6
- debian/libuuid1 2.29.2-1 deb9u1
- debian/libwebp6 0.5.2-1
- debian/libx11-6 2:1.6.4-3
- debian/libx11-data 2:1.6.4-3
- debian/libxau6 1:1.0.8-1
- debian/libxaw7 2:1.0.13-1 b2
- debian/libxcb-render0 1.12-1
- debian/libxcb-shm0 1.12-1
- debian/libxcb1 1.12-1
- debian/libxdmcp6 1:1.1.2-3
- debian/libxdot4 2.38.0-17
- debian/libxext6 2:1.3.3-1 b2
- debian/libxml2 2.9.4 dfsg1-2.2 deb9u2
- debian/libxmu6 2:1.1.2-2
- debian/libxmuu1 2:1.1.2-2
- debian/libxpm4 1:3.5.12-1
- debian/libxrender1 1:0.9.10-1
- debian/libxt6 1:1.1.5-1
- debian/linux-libc-dev 4.9.144-3.1
- debian/login 1:4.4-4.1
- debian/lsb-base 9.20161125
- debian/make 4.1-9.1
- debian/manpages-dev 4.10-2
- debian/manpages 4.10-2
- debian/mawk 1.3.3-17 b3
- debian/mime-support 3.60
- debian/mount 2.29.2-1 deb9u1
- debian/multiarch-support 2.24-11 deb9u3
- debian/ncurses-base 6.0 20161126-1 deb9u2
- debian/ncurses-bin 6.0 20161126-1 deb9u2
- debian/netbase 5.4
- debian/openssh-client 1:7.4p1-10 deb9u4
- debian/openssl 1.1.0f-3 deb9u2
- debian/passwd 1:4.4-4.1
- debian/patch 2.7.5-1 deb9u1
- debian/perl-base 5.24.1-3 deb9u4
- debian/perl-modules-5.24 5.24.1-3 deb9u4
- debian/perl 5.24.1-3 deb9u4
- debian/pinentry-curses 1.0.0-2
- debian/publicsuffix 20180218.2049-0 deb9u1
- debian/readline-common 7.0-3
- debian/rename 0.20-4
- debian/rsync 3.1.2-1 deb9u1
- debian/sed 4.4-1
- debian/sensible-utils 0.0.9 deb9u1
- debian/sgml-base 1.29
- debian/shared-mime-info 1.8-1 deb9u1
- debian/sysvinit-utils 2.88dsf-59.9
- debian/tar 1.29b-1.1
- debian/time 1.7-25.1 b1
- debian/tzdata 2018e-0 deb9u1
- debian/ucf 3.0036
- debian/util-linux 2.29.2-1 deb9u1
- debian/valgrind-dbg 1:3.12.0~svn20160714-1 b1
- debian/valgrind 1:3.12.0~svn20160714-1 b1
- debian/wget 1.18-5 deb9u2
- debian/x11-common 1:7.7 19
- debian/xauth 1:1.0.9-1 b2
- debian/xdg-user-dirs 0.15-2 b1
- debian/xml-core 0.17
- debian/xz-utils 5.2.2-1.2 b1
- debian/zlib1g-dev 1:1.2.8.dfsg-5
- debian/zlib1g 1:1.2.8.dfsg-5
- ConfigArgParse 0.13.0
- PyNaCl 1.3.0
- PySocks 1.6.8
- PyYAML 3.13
- Pygments 2.3.1
- aioeasywebdav 2.2.0
- aiohttp 3.5.4
- appdirs 1.4.3
- asn1crypto 0.24.0
- async-timeout 3.0.1
- attrs 18.2.0
- bcrypt 3.1.4
- certifi 2018.11.29
- cffi 1.12.1
- chardet 3.0.4
- conda 4.6.7
- cryptography 2.5
- docutils 0.14
- dropbox 9.2.0
- filechunkio 1.6
- flask 0.10.1
- ftputil 3.2
- idna-ssl 1.1.0
- idna 2.8
- mkl-fft 1.0.10
- mkl-random 1.0.2
- multidict 4.5.2
- numpy 1.15.4
- pandas 0.24.1
- paramiko 2.4.2
- pip 19.0.3
- psutil 5.5.1
- pyOpenSSL 19.0.0
- pyasn1 0.4.4
- pycosat 0.6.3
- pycparser 2.19
- python-dateutil 2.8.0
- pytz 2018.9
- ratelimiter 1.2.0
- requests 2.21.0
- ruamel-yaml 0.15.71
- scif 0.0.76
- setuptools 40.8.0
- six 1.12.0
- snakemake 4.4.0
- typing-extensions 3.7.2
- urllib3 1.24.1
- wheel 0.33.1
- wrapt 1.11.1
- yarl 1.3.0