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alexanrna/bonito : 0.6.1_rerio

Ubuntu 20.04.5 LTS

Latest release: over 2 years ago - 40 downloads - 298 dependencies

JSON

Dependencies

ubuntu/adduser 3.118ubuntu2
ubuntu/apt 2.0.9
ubuntu/base-files 11ubuntu5.6
ubuntu/base-passwd 3.5.47
ubuntu/bash 5.0-6ubuntu1.2
ubuntu/binutils-common 2.34-6ubuntu1.3
ubuntu/binutils-x86-64-linux-gnu 2.34-6ubuntu1.3
ubuntu/binutils 2.34-6ubuntu1.3
ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
ubuntu/build-essential 12.8ubuntu1.1
ubuntu/bzip2 1.0.8-2
ubuntu/ca-certificates 20211016~20.04.1
ubuntu/coreutils 8.30-3ubuntu2
ubuntu/cpp-9 9.4.0-1ubuntu1~20.04.1
ubuntu/cpp 4:9.3.0-1ubuntu2
ubuntu/dash 0.5.10.2-6
ubuntu/debconf 1.5.73
ubuntu/debianutils 4.9.1
ubuntu/diffutils 1:3.7-3
ubuntu/dirmngr 2.2.19-3ubuntu2.2
ubuntu/dpkg-dev 1.19.7ubuntu3.2
ubuntu/dpkg 1.19.7ubuntu3.2
ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
ubuntu/fakeroot 1.24-1
ubuntu/fdisk 2.34-0.1ubuntu9.3
ubuntu/file 1:5.38-4
ubuntu/findutils 4.7.0-1ubuntu1
ubuntu/g -9 9.4.0-1ubuntu1~20.04.1
ubuntu/g 4:9.3.0-1ubuntu2
ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
ubuntu/gcc-9-base 9.4.0-1ubuntu1~20.04.1
ubuntu/gcc-9 9.4.0-1ubuntu1~20.04.1
ubuntu/gcc 4:9.3.0-1ubuntu2
ubuntu/git-man 1:2.25.1-1ubuntu3.6
ubuntu/git 1:2.25.1-1ubuntu3.6
ubuntu/gnupg-l10n 2.2.19-3ubuntu2.2
ubuntu/gnupg-utils 2.2.19-3ubuntu2.2
ubuntu/gnupg 2.2.19-3ubuntu2.2
ubuntu/gpg-agent 2.2.19-3ubuntu2.2
ubuntu/gpg-wks-client 2.2.19-3ubuntu2.2
ubuntu/gpg-wks-server 2.2.19-3ubuntu2.2
ubuntu/gpg 2.2.19-3ubuntu2.2
ubuntu/gpgconf 2.2.19-3ubuntu2.2
ubuntu/gpgsm 2.2.19-3ubuntu2.2
ubuntu/gpgv 2.2.19-3ubuntu2.2
ubuntu/grep 3.4-1
ubuntu/gzip 1.10-0ubuntu4.1
ubuntu/hostname 3.23
ubuntu/init-system-helpers 1.57
ubuntu/krb5-locales 1.17-6ubuntu4.1
ubuntu/less 551-1ubuntu0.1
ubuntu/libacl1 2.2.53-6
ubuntu/libalgorithm-diff-perl 1.19.03-2
ubuntu/libalgorithm-diff-xs-perl 0.04-6
ubuntu/libalgorithm-merge-perl 0.08-3
ubuntu/libapt-pkg6.0 2.0.9
ubuntu/libasan5 9.4.0-1ubuntu1~20.04.1
ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libassuan0 2.5.3-7ubuntu2
ubuntu/libatomic1 10.3.0-1ubuntu1~20.04
ubuntu/libattr1 1:2.4.48-5
ubuntu/libaudit-common 1:2.8.5-2ubuntu6
ubuntu/libaudit1 1:2.8.5-2ubuntu6
ubuntu/libbinutils 2.34-6ubuntu1.3
ubuntu/libblkid1 2.34-0.1ubuntu9.3
ubuntu/libbrotli1 1.0.7-6ubuntu0.1
ubuntu/libbsd0 0.10.0-1
ubuntu/libbz2-1.0 1.0.8-2
ubuntu/libc-bin 2.31-0ubuntu9.9
ubuntu/libc-dev-bin 2.31-0ubuntu9.9
ubuntu/libc6-dev 2.31-0ubuntu9.9
ubuntu/libc6 2.31-0ubuntu9.9
ubuntu/libcap-ng0 0.7.9-2.1build1
ubuntu/libcbor0.6 0.6.0-0ubuntu1
ubuntu/libcc1-0 10.3.0-1ubuntu1~20.04
ubuntu/libcom-err2 1.45.5-2ubuntu1.1
ubuntu/libcrypt-dev 1:4.4.10-10ubuntu4
ubuntu/libcrypt1 1:4.4.10-10ubuntu4
ubuntu/libctf-nobfd0 2.34-6ubuntu1.3
ubuntu/libctf0 2.34-6ubuntu1.3
ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.13
ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
ubuntu/libdebconfclient0 0.251ubuntu1
ubuntu/libdpkg-perl 1.19.7ubuntu3.2
ubuntu/libedit2 3.1-20191231-1
ubuntu/liberror-perl 0.17029-1
ubuntu/libexpat1-dev 2.2.9-1ubuntu0.4
ubuntu/libexpat1 2.2.9-1ubuntu0.4
ubuntu/libext2fs2 1.45.5-2ubuntu1.1
ubuntu/libfakeroot 1.24-1
ubuntu/libfdisk1 2.34-0.1ubuntu9.3
ubuntu/libffi7 3.3-4
ubuntu/libfido2-1 1.3.1-1ubuntu2
ubuntu/libfile-fcntllock-perl 0.22-3build4
ubuntu/libgcc-9-dev 9.4.0-1ubuntu1~20.04.1
ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
ubuntu/libgdbm-compat4 1.18.1-5
ubuntu/libgdbm6 1.18.1-5
ubuntu/libgmp10 2:6.2.0 dfsg-4
ubuntu/libgnutls30 3.6.13-2ubuntu1.7
ubuntu/libgomp1 10.3.0-1ubuntu1~20.04
ubuntu/libgpg-error0 1.37-1
ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.1
ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libidn2-0 2.2.0-2
ubuntu/libisl22 0.22.1-1
ubuntu/libitm1 10.3.0-1ubuntu1~20.04
ubuntu/libk5crypto3 1.17-6ubuntu4.1
ubuntu/libkeyutils1 1.6-6ubuntu1.1
ubuntu/libkrb5-26-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libkrb5-3 1.17-6ubuntu4.1
ubuntu/libkrb5support0 1.17-6ubuntu4.1
ubuntu/libksba8 1.3.5-2ubuntu0.20.04.1
ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.9
ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.9
ubuntu/liblocale-gettext-perl 1.07-4
ubuntu/liblsan0 10.3.0-1ubuntu1~20.04
ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
ubuntu/liblzma5 5.2.4-1ubuntu1.1
ubuntu/libmagic-mgc 1:5.38-4
ubuntu/libmagic1 1:5.38-4
ubuntu/libmount1 2.34-0.1ubuntu9.3
ubuntu/libmpc3 1.1.0-1
ubuntu/libmpdec2 2.4.2-3
ubuntu/libmpfr6 4.0.2-1
ubuntu/libncurses6 6.2-0ubuntu2
ubuntu/libncursesw6 6.2-0ubuntu2
ubuntu/libnettle7 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libnghttp2-14 1.40.0-1build1
ubuntu/libnpth0 1.6-1
ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.3
ubuntu/libpam-modules 1.3.1-5ubuntu4.3
ubuntu/libpam-runtime 1.3.1-5ubuntu4.3
ubuntu/libpam0g 1.3.1-5ubuntu4.3
ubuntu/libpcre2-8-0 10.34-7ubuntu0.1
ubuntu/libpcre3 2:8.39-12ubuntu0.1
ubuntu/libperl5.30 5.30.0-9ubuntu0.3
ubuntu/libprocps8 2:3.3.16-1ubuntu2.3
ubuntu/libpsl5 0.21.0-1ubuntu1
ubuntu/libpython3-dev 3.8.2-0ubuntu2
ubuntu/libpython3-stdlib 3.8.2-0ubuntu2
ubuntu/libpython3.8-dev 3.8.10-0ubuntu1~20.04.5
ubuntu/libpython3.8-minimal 3.8.10-0ubuntu1~20.04.5
ubuntu/libpython3.8-stdlib 3.8.10-0ubuntu1~20.04.5
ubuntu/libpython3.8 3.8.10-0ubuntu1~20.04.5
ubuntu/libquadmath0 10.3.0-1ubuntu1~20.04
ubuntu/libreadline8 8.0-4
ubuntu/libroken18-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build1
ubuntu/libsasl2-2 2.1.27 dfsg-2ubuntu0.1
ubuntu/libsasl2-modules-db 2.1.27 dfsg-2ubuntu0.1
ubuntu/libsasl2-modules 2.1.27 dfsg-2ubuntu0.1
ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
ubuntu/libselinux1 3.0-1build2
ubuntu/libsemanage-common 3.0-1build2
ubuntu/libsemanage1 3.0-1build2
ubuntu/libsepol1 3.0-1ubuntu0.1
ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
ubuntu/libsqlite3-0 3.31.1-4ubuntu0.4
ubuntu/libss2 1.45.5-2ubuntu1.1
ubuntu/libssh-4 0.9.3-2ubuntu2.2
ubuntu/libssl1.1 1.1.1f-1ubuntu2.16
ubuntu/libstdc -9-dev 9.4.0-1ubuntu1~20.04.1
ubuntu/libstdc 6 10.3.0-1ubuntu1~20.04
ubuntu/libsystemd0 245.4-4ubuntu3.18
ubuntu/libtasn1-6 4.16.0-2
ubuntu/libtinfo6 6.2-0ubuntu2
ubuntu/libtsan0 10.3.0-1ubuntu1~20.04
ubuntu/libubsan1 10.3.0-1ubuntu1~20.04
ubuntu/libudev1 245.4-4ubuntu3.18
ubuntu/libunistring2 0.9.10-2
ubuntu/libuuid1 2.34-0.1ubuntu9.3
ubuntu/libwind0-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libx11-6 2:1.6.9-2ubuntu1.2
ubuntu/libx11-data 2:1.6.9-2ubuntu1.2
ubuntu/libxau6 1:1.0.9-0ubuntu1
ubuntu/libxcb1 1.14-2
ubuntu/libxdmcp6 1:1.1.3-0ubuntu1
ubuntu/libxext6 2:1.3.4-0ubuntu1
ubuntu/libxmuu1 2:1.1.3-0ubuntu1
ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
ubuntu/linux-libc-dev 5.4.0-131.147
ubuntu/login 1:4.8.1-1ubuntu5.20.04.2
ubuntu/logsave 1.45.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu2
ubuntu/make 4.2.1-1.2
ubuntu/manpages-dev 5.05-1
ubuntu/manpages 5.05-1
ubuntu/mawk 1.3.4.20200120-2
ubuntu/mime-support 3.64ubuntu1
ubuntu/mount 2.34-0.1ubuntu9.3
ubuntu/ncurses-base 6.2-0ubuntu2
ubuntu/ncurses-bin 6.2-0ubuntu2
ubuntu/netbase 6.1
ubuntu/openssh-client 1:8.2p1-4ubuntu0.5
ubuntu/openssl 1.1.1f-1ubuntu2.16
ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.2
ubuntu/patch 2.7.6-6
ubuntu/perl-base 5.30.0-9ubuntu0.3
ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.3
ubuntu/perl 5.30.0-9ubuntu0.3
ubuntu/pinentry-curses 1.1.0-3build1
ubuntu/procps 2:3.3.16-1ubuntu2.3
ubuntu/publicsuffix 20200303.0012-1
ubuntu/python-pip-whl 20.0.2-5ubuntu1.6
ubuntu/python3-dev 3.8.2-0ubuntu2
ubuntu/python3-distutils 3.8.10-0ubuntu1~20.04
ubuntu/python3-lib2to3 3.8.10-0ubuntu1~20.04
ubuntu/python3-minimal 3.8.2-0ubuntu2
ubuntu/python3-pip 20.0.2-5ubuntu1.6
ubuntu/python3-pkg-resources 45.2.0-1
ubuntu/python3-setuptools 45.2.0-1
ubuntu/python3-venv 3.8.2-0ubuntu2
ubuntu/python3-wheel 0.34.2-1
ubuntu/python3.8-dev 3.8.10-0ubuntu1~20.04.5
ubuntu/python3.8-minimal 3.8.10-0ubuntu1~20.04.5
ubuntu/python3.8-venv 3.8.10-0ubuntu1~20.04.5
ubuntu/python3.8 3.8.10-0ubuntu1~20.04.5
ubuntu/python3 3.8.2-0ubuntu2
ubuntu/readline-common 8.0-4
ubuntu/sed 4.7-1
ubuntu/sensible-utils 0.0.12 nmu1
ubuntu/sysvinit-utils 2.96-2.1ubuntu1
ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.2
ubuntu/ubuntu-keyring 2020.02.11.4
ubuntu/util-linux 2.34-0.1ubuntu9.3
ubuntu/xauth 1:1.1-0ubuntu1
ubuntu/xz-utils 5.2.4-1ubuntu1.1
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu1.5
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5

more-itertools 9.0.0
mpmath 1.2.1
numpy 1.21.6
onnx 1.12.0
ont-bonito 0.6.1
onnxruntime-gpu 1.12.1
onnxruntime 1.12.1
attrs 22.1.0
certifi 2022.9.24
cffi 1.15.1
chardet 4.0.0
coloredlogs 15.0.1
fast_ctc_decode 0.3.2
flatbuffers 22.9.24
h5py 3.7.0
humanfriendly 10.0
idna 2.10
importlib-resources 5.10.0
iso8601 1.1.0
joblib 1.2.0
jsonschema 4.16.0
mappy 2.24
ont-fast5-api 3.3.0
ont-koi 0.1.1
ont-remora 1.1.1
packaging 21.3
pandas 1.5.1
parasail 1.2
pip 20.0.2
pip 22.3
pkg_resources 0.0.0
pkgutil_resolve_name 1.3.10
pod5-format-tools 0.0.23
pod5-format 0.0.23
progressbar33 2.4
protobuf 3.20.1
pyarrow 8.0.0
pycparser 2.21
pyparsing 3.0.9
pyrsistent 0.18.1
pysam 0.19.1
python-dateutil 2.8.2
pytz 2022.5
requests 2.25.1
scikit-learn 1.1.2
scipy 1.7.3
setuptools 44.0.0
setuptools 45.2.0
six 1.16.0
sympy 1.11.1
tabulate 0.9.0
thop 0.1.1-2209072238
threadpoolctl 3.1.0
toml 0.10.2
torch 1.12.1 cu113
tqdm 4.64.1
typing_extensions 4.4.0
urllib3 1.26.12
wheel 0.34.2
zipp 3.10.0

bash 5.0.17