Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : pypi : pysam

Explore the latest package usage data for pysam in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 422
Total downloads: 33,632,904

More details on packages.ecosyste.ms - JSON

yiluxiangbei/pumpkin-gatk-notebook 1.0

  • version: 0.15.3
Latest release: about 3 years ago - 10 downloads - 1,570 dependencies
cancersysbio/optitype v1.0.4

  • version: 0.19.0
Latest release: over 1 year ago - 13 downloads - 123 dependencies
katharinahoff/response-notebook devel

  • version: 0.20.0
Latest release: almost 2 years ago - 21 downloads - 1,473 dependencies
intelliseqngs/pypgx 1.0.0

  • version: 0.16.0.1
Latest release: over 4 years ago - 84 downloads - 36 dependencies
intelliseqngs/broad-institute-hg38 1.0.0

  • version: 0.13
Latest release: over 4 years ago - 10 downloads - 930 dependencies
sddcunit/lowpass 0.9.3

  • version: 0.19.1
Latest release: over 1 year ago - 12 downloads - 1,461 dependencies
stormgod/deepmaps-cpu latest

  • version: 0.20.0
Latest release: over 1 year ago - 31 downloads - 1,710 dependencies
smk5g5/cnvkit latest

  • version: 0.20.0
Latest release: almost 2 years ago - 10 downloads - 108 dependencies
zavolab/scinpas_python v1.0.6

  • version: 0.18.0
Latest release: 12 months ago - 208 downloads - 242 dependencies
itsjeffreyy/repeatexpansion_analysis latest

  • version: 0.20.0
Latest release: almost 2 years ago - 9 downloads - 45 dependencies
ctomlins/testuniv_link latest

  • version: 0.15.3
Latest release: about 4 years ago - 10 downloads - 118 dependencies
yiluxiangbei/pumpkin-ribotish-notebook 1.0

  • version: 0.17.0
Latest release: about 3 years ago - 10 downloads - 1,010 dependencies
lucapandolfini/peakachu 2.1

  • version: 0.20.0
Latest release: almost 2 years ago - 10 downloads - 67 dependencies
intelliseqngs/prodia_task_vcfs_merge 1.0.0

  • version: 0.19.1
Latest release: about 2 years ago - 10 downloads - 57 dependencies
erictdawson/clair3 2023-Jul-05

  • version: 0.19.1, 0.21.0
Latest release: over 1 year ago - 87 downloads - 112 dependencies
soymintc/savana 0.0.2

Dockerized SAVANA (an SV caller) from https://github.com/cortes-ciriano-lab/savana

  • version: 0.20.0, 0.16.0
Latest release: over 1 year ago - 27 downloads - 154 dependencies
dhspence/docker-genomic-analysis-lite 102321

  • version: 0.17.0
Latest release: about 3 years ago - 10 downloads - 397 dependencies
bioinformatics/svimmer latest

svimmer - Tool merges similar SVs from multiple single sample VCF files discovered with Manta

  • version: 0.20.0
Latest release: almost 2 years ago - 58 downloads - 6 dependencies
intelliseqngs/gatk-4.1.6.0-grch38-no-alt 1.0.0

  • version: 0.13
Latest release: over 4 years ago - 10 downloads - 437 dependencies
intelliseqngs/openjdk11 1.0.0

  • version: 0.15.4
Latest release: over 4 years ago - 10 downloads - 49 dependencies
ctomlins/tseq latest

  • version: 0.15.3
Latest release: about 4 years ago - 10 downloads - 536 dependencies
ctomlins/tseq_2 latest

  • version: 0.15.3
Latest release: about 4 years ago - 10 downloads - 538 dependencies
qdidiscoveryservices/py3_bwa_samtools_biobambam2 latest

  • version: 0.16.0.1
Latest release: over 3 years ago - 9 downloads - 1,059 dependencies
intelliseqngs/dragmap 1.1.0

  • version: 0.19.1
Latest release: almost 2 years ago - 11 downloads - 57 dependencies
intelliseqngs/dragmap-grch38-no-alt-chr-wise 1.1.0-chrY-and-the-rest

  • version: 0.19.1
Latest release: almost 2 years ago - 56 downloads - 57 dependencies
hkubal/clusterv v1.2

ClusterV: finding HIV subtypes from ONT sequencing data

  • version: 0.15.3
Latest release: 12 months ago - 29 downloads - 285 dependencies
dhspence/docker-peppermargindv-gpu latest

  • version: 0.18.0
Latest release: almost 2 years ago - 9 downloads - 142 dependencies
crukmi/cnvkit 0.9.9--pyhdfd78af_0_md2

  • version: 0.16.0.1
Latest release: about 2 years ago - 10 downloads - 47 dependencies
dhspence/docker-longread latest

  • version: 0.20.0
Latest release: almost 2 years ago - 9 downloads - 155 dependencies
chgyi/xtea 0.1.7

  • version: 0.15.3
Latest release: over 2 years ago - 9 downloads - 31 dependencies
chgyi/lumpy-sv latest

  • version: 0.15.3
Latest release: over 2 years ago - 9 downloads - 21 dependencies
sbouslama/sb-mpxv-nf alpha3

  • version: 0.16.0.1
Latest release: over 1 year ago - 265 downloads - 907 dependencies
syedraheemuddin786/asgt v41

  • version: 0.21.0
Latest release: over 1 year ago - 47 downloads - 80 dependencies
jambato/carlos latest

  • version: 0.18.0
Latest release: almost 2 years ago - 11 downloads - 161 dependencies
hoonbiolab/align_dan v1.3

  • version: 0.16.0.1
Latest release: about 3 years ago - 8 downloads - 466 dependencies
chaunceyzhou/awesome_rnaseq v1.3

  • version: 0.16.0.1
Latest release: about 1 year ago - 16 downloads - 465 dependencies
yiluxiangbei/pumpkin-gatk 1.0

  • version: 0.15.3
Latest release: about 3 years ago - 9 downloads - 587 dependencies
yiluxiangbei/python 3.7-ribotish

  • version: 0.17.0
Latest release: about 3 years ago - 9 downloads - 23 dependencies
othove/lrs_dncnn img_fix

  • version: 0.19.0
Latest release: over 1 year ago - 9 downloads - 114 dependencies
albertea/velocyto_reports 01

  • version: 0.15.2
Latest release: almost 2 years ago - 33 downloads - 167 dependencies
ctomlins/testuniv_sort latest

  • version: 0.15.3, 0.15.1
Latest release: about 4 years ago - 9 downloads - 184 dependencies
ctomlins/coffee latest

  • version: 0.16.0.1
Latest release: about 3 years ago - 8 downloads - 92 dependencies
intelliseqngs/wisecondorx 1.0.0

  • version: 0.16.0.1
Latest release: over 3 years ago - 9 downloads - 48 dependencies
intelliseqngs/gatk-4.1.9.0-grch38-no-alt 1.0.0

  • version: 0.15.3
Latest release: almost 4 years ago - 9 downloads - 677 dependencies
mbaardwijk/nf-core-somaticcnv latest

  • version: 0.20.0, 0.15.4
Latest release: almost 2 years ago - 9 downloads - 118 dependencies
aminhaghparast/ieo V.18

  • version: 0.17.0, 0.16.0.1
Latest release: over 1 year ago - 9 downloads - 181 dependencies
nbutter/cellranger ubuntu1604

  • version: 0.17.0
Latest release: almost 2 years ago - 19 downloads - 38 dependencies
fauzul/fuseq_wes_hg19 1.0

  • version: 0.21.0
Latest release: over 1 year ago - 9 downloads - 126 dependencies
passdan/sniffles2 latest

  • version: 0.20.0
Latest release: almost 2 years ago - 8 downloads - 24 dependencies
koichihigashi/ubuntu hicexplorer

  • version: 0.9.1
Latest release: over 1 year ago - 8 downloads - 1,066 dependencies
sydneyinformaticshub/spaceranger centos7

  • version: 0.17.0
Latest release: over 1 year ago - 28 downloads - 336 dependencies
repbioinfo/detectseq latest

  • version: 0.18.0
Latest release: over 1 year ago - 11 downloads - 2,183 dependencies
kingspm/snappy_python3_liftover 1.0.0

  • version: 0.20.0, 0.16.0.1
Latest release: almost 2 years ago - 10 downloads - 126 dependencies
ontresearch/wf-amplicon-clair3 mr135_shaa51744fee019e824a90b298551a447c733fe46f9

  • version: 0.19.1
Latest release: over 1 year ago - 8 downloads - 108 dependencies
crpeters/whatshap 1.7

  • version: 0.19.1
Latest release: almost 2 years ago - 9 downloads - 26 dependencies
lishuangshuang3/dnbc4dev latest

  • version: 0.21.0
Latest release: over 1 year ago - 73 downloads - 1,043 dependencies
hpcteam/optitype 1.3.3

  • version: 0.14
Latest release: almost 2 years ago - 11 downloads - 70 dependencies
macadology/bwa latest

  • version: 0.21.0
Latest release: almost 2 years ago - 8 downloads - 9 dependencies
glenn032787/nanosim 1.5

  • version: 0.20.0, 0.21.0
Latest release: over 1 year ago - 31 downloads - 32 dependencies
dhspence/docker-megalodon latest

  • version: 0.20.0
Latest release: almost 2 years ago - 8 downloads - 50 dependencies
gesiscss/binder-r2d-g5b5b759-motroy-2dsandbox-2d2022-fe2cc6 0c9cefb5c54b1fe0826abed9f78eaf18f3feb82f

  • version: 0.20.0
Latest release: over 1 year ago - 31 downloads - 2,011 dependencies
wusonggang2/dnabarcodes latest

  • version: 0.16.0.1
Latest release: almost 2 years ago - 8 downloads - 304 dependencies
hoonbiolab/genepattern_aa v19.1

  • version: 0.15.2, 0.18.0
Latest release: about 2 years ago - 6 downloads - 628 dependencies
mparikhbroad/line1_workflow 1.0.0

  • version: 0.20.0
Latest release: over 1 year ago - 92 downloads - 424 dependencies
yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

  • version: 0.21.0, 0.20.0
Latest release: over 1 year ago - 119 downloads - 1,068 dependencies
mdivr/quarto v3

  • version: 0.21.0
Latest release: over 1 year ago - 239 downloads - 1,613 dependencies
dmiller15/delly 0.7.6

  • version: 0.19.1
Latest release: almost 2 years ago - 5 downloads - 234 dependencies
melsiddieg/hap.py 3.15

  • version: 0.14
Latest release: almost 2 years ago - 6 downloads - 623 dependencies
nfcore/cellranger_clean 3.0.2.9002

Mirror of universc Single cell tooling - cellranger_clean

  • version: 0.12.0.1
Latest release: almost 2 years ago - 6 downloads - 1,995 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 0.20.0
Latest release: over 1 year ago - 38 downloads - 2,387 dependencies
intelliseqngs/prodia_task_imputing-ldproxy-without-ref-data 1.0.4

  • version: 0.20.0
Latest release: over 1 year ago - 5 downloads - 252 dependencies
unlhcc/cellranger-arc e76e42755808

  • version: 0.16.0.1
Latest release: about 1 year ago - 118 downloads - 235 dependencies
shujuanzhao/t1 02

  • version: 0.15.3
Latest release: almost 2 years ago - 6 downloads - 321 dependencies
ygidtu/trackplotweb 0.2.8

  • version: 0.21.0
Latest release: over 1 year ago - 12 downloads - 490 dependencies
njjai/scbasset_ai 0.1

  • version: 0.19.0
Latest release: over 1 year ago - 11 downloads - 1,258 dependencies
hugtools/primer4hugbuild 0.4.2

  • version: 0.20.0, 0.15.1
Latest release: over 1 year ago - 12 downloads - 470 dependencies
philiplin1212/gatk latest

  • version: 0.15.3
Latest release: over 1 year ago - 8 downloads - 1,137 dependencies
syedraheemuddin786/vsgt-api v3.2

  • version: 0.21.0
Latest release: over 1 year ago - 22 downloads - 499 dependencies
intelliseqngs/task_pgx-phase-beagle 1.1.1

  • version: 0.19.1
Latest release: about 1 year ago - 172 downloads - 450 dependencies
bioinformaticsmusc/ploidy-ngs latest

  • version: 0.19.1
Latest release: over 1 year ago - 11 downloads - 1,181 dependencies
acox1/nf-perturbseq 1.0

  • version: 0.15.3
Latest release: over 1 year ago - 21 downloads - 458 dependencies
seglh/snappy_manta 4.0.0

https://git.kingspm.uk/KingsPM/snappy

  • version: 0.8.3
Latest release: 11 months ago - 40 downloads - 1,344 dependencies
aokad/savana 1.0.3

  • version: 0.20.0
Latest release: over 1 year ago - 13 downloads - 250 dependencies
hwt940810/wentaohan_altanalyze_0.7 latest

  • version: 0.16.0.1
Latest release: over 1 year ago - 8 downloads - 801 dependencies
lsglh/txch_dup latest

  • version: 0.15.4
Latest release: over 1 year ago - 6 downloads - 186 dependencies