Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : pypi : pysam

Explore the latest package usage data for pysam in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 422
Total downloads: 33,632,904

More details on packages.ecosyste.ms - JSON

dhspence/docker-myeloseq 100121

  • version: 0.17.0
Latest release: about 3 years ago - 31 downloads - 416 dependencies
intelliseqngs/acmg-pp3 latest

  • version: 0.15.3
Latest release: almost 5 years ago - 27 downloads - 265 dependencies
ghhenry/curio-seeker-pipeline latest

  • version: 0.19.1
Latest release: almost 2 years ago - 27 downloads - 926 dependencies
edg1983/megalodon v2.5.0

  • version: 0.20.0
Latest release: almost 2 years ago - 30 downloads - 305 dependencies
ctomlins/bcl2fastq latest

  • version: 0.14.1
Latest release: over 3 years ago - 28 downloads - 474 dependencies
intelliseqngs/ubuntu-toolbox-22.04 1.0.3

  • version: 0.21.0, 0.19.1
Latest release: over 1 year ago - 55 downloads - 389 dependencies
jpsmith5/peppro latest

  • version: 0.20.0
Latest release: almost 2 years ago - 29 downloads - 1,163 dependencies
skoyamamd/ldsc latest

  • version: 0.20.0
Latest release: over 2 years ago - 34 downloads - 325 dependencies
intelliseqngs/task_vcf-beagle-merge 1.0.1

  • version: 0.19.1
Latest release: over 1 year ago - 56 downloads - 388 dependencies
hoonbiolab/ngscheckmate v1.1

  • version: 0.16.0.1
Latest release: about 3 years ago - 32 downloads - 653 dependencies
intelliseqngs/model-tmp 1.1.0

  • version: 0.16.0.1
Latest release: about 3 years ago - 25 downloads - 241 dependencies
shukwong/rstudio_with_gwas_tools fd324eb9d3d2117fc37a157b66fa371a53693442

rstudio with several gwas tools installed

  • version: 0.15.3
Latest release: almost 2 years ago - 285 downloads - 1,361 dependencies
intelliseqngs/prodia_task_mobigen-models 1.1.4

  • version: 0.19.0
Latest release: over 1 year ago - 115 downloads - 416 dependencies
intelliseqngs/prodia_task_gtc-to-vcf-grch38-no-alt 1.0.4

  • version: 0.20.0
Latest release: over 1 year ago - 41 downloads - 635 dependencies
intelliseqngs/task_json-prioritize-var-somatic 1.0.0

  • version: 0.19.1
Latest release: almost 2 years ago - 45 downloads - 388 dependencies
hoonbiolab/sequenza v1.1

  • version: 0.16.0.1
Latest release: about 3 years ago - 25 downloads - 801 dependencies
bokebiotech/qcpipe v6

  • version: 0.21.0, 0.20.0
Latest release: over 1 year ago - 115 downloads - 1,186 dependencies
nciccbr/ccrgb_hlaminer v2

  • version: 0.21.0, 0.19.1
Latest release: over 1 year ago - 96 downloads - 713 dependencies
gene110/python3.9.15 ecd

  • version: 0.19.1
Latest release: about 2 years ago - 16 downloads - 450 dependencies
tom418/kaist-ina-mutcall 2.0

  • version: 0.16.0.1, 0.20.0
Latest release: over 1 year ago - 44 downloads - 497 dependencies
sheddn/bioinformatics-tools latest

  • version: 0.20.0
Latest release: almost 2 years ago - 41 downloads - 2,518 dependencies
hoonbiolab/fastq v1.0

  • version: 0.16.0.1
Latest release: over 3 years ago - 19 downloads - 822 dependencies
theodps/perigene latest

  • version: 0.20.0
Latest release: almost 2 years ago - 50 downloads - 288 dependencies
hoonbiolab/telomeasure v1.1

  • version: 0.16.0.1
Latest release: almost 3 years ago - 22 downloads - 814 dependencies
biodancer/nasap_performance latest

write later

  • version: 0.18.0
Latest release: almost 2 years ago - 18 downloads - 2,006 dependencies
dhspence/docker-pysam latest

  • version: 0.16.0.1
Latest release: almost 4 years ago - 18 downloads - 328 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: 0.15.3
Latest release: over 1 year ago - 15 downloads - 1,069 dependencies
leepc12/test-jupyterhub v0.2.0

test-jupyterhub

  • version: 0.20.0
Latest release: over 1 year ago - 30 downloads - 1,857 dependencies
almahmoud/galaxy-dev rclone

  • version: 0.15.2
Latest release: about 5 years ago - 19 downloads - 2,183 dependencies
intelliseqngs/acmg-bs2 latest

  • version: 0.15.3
Latest release: almost 5 years ago - 18 downloads - 265 dependencies
hydragenetics/smncopynumbercaller 1.1.2

  • version: 0.15.3
Latest release: almost 2 years ago - 47 downloads - 123 dependencies
ontresearch/wf-amplicon sha7d1766bb6196d4c370d6bd45d89154e7c1fef0b3

  • version: 0.21.0
Latest release: 11 months ago - 5,529 downloads - 206 dependencies
mrkevindc/varscan latest

  • version: 0.15.3
Latest release: almost 2 years ago - 66 downloads - 924 dependencies
doejgi/eukcc 2.1.2

  • version: 0.17.0
Latest release: about 2 years ago - 22 downloads - 204 dependencies
mrkevindc/mutect2 latest

  • version: 0.15.3
Latest release: almost 2 years ago - 36 downloads - 912 dependencies
ctomlins/rseqc latest

  • version: 0.20.0
Latest release: almost 2 years ago - 59 downloads - 483 dependencies
johnyaku/souporcell test

Extension to the original souporcell pipeline:

  • version: 0.16.0.1
Latest release: about 1 year ago - 61 downloads - 780 dependencies
jpcartailler/taha 0.7

  • version: 0.20.0
Latest release: over 1 year ago - 22 downloads - 788 dependencies
hoonbiolab/annovar v1.0

  • version: 0.16.0.1, 0.18.0
Latest release: almost 3 years ago - 18 downloads - 810 dependencies
hoonbiolab/sratools v1.1

  • version: 0.16.0.1
Latest release: about 3 years ago - 17 downloads - 652 dependencies
mrkevindc/sashimi latest

  • version: 0.18.0
Latest release: almost 2 years ago - 14 downloads - 360 dependencies
chgyi/galaxy-stable latest

  • version: 0.15.2
Latest release: about 5 years ago - 14 downloads - 2,669 dependencies
aminhaghparast/genomics21 2.12

  • version: 0.14.1, 0.9.1, 0.16.0.1, 0.15.4
Latest release: almost 2 years ago - 12 downloads - 522 dependencies
geedrn/dajin tensorflow

  • version: 0.15.3
Latest release: almost 2 years ago - 41 downloads - 539 dependencies
btrspg/baleen dev

  • version: 0.21.0
Latest release: over 1 year ago - 437 downloads - 280 dependencies
hoonbiolab/fastp v1.1

  • version: 0.16.0.1
Latest release: about 3 years ago - 16 downloads - 792 dependencies
wilfriedguiblet/isomir v0.3

  • version: 0.19.1
Latest release: over 1 year ago - 180 downloads - 1,657 dependencies
mugicrow/pfal_variant_call v1.0.1

bcftools-based variant calling pipeline

  • version: 0.19.1
Latest release: almost 2 years ago - 32 downloads - 243 dependencies
curiobioinformatics/curio-seeker-pipeline 363d9feeef37b9b99915dea19822d0f75d7c8898

  • version: 0.21.0, 0.19.1
Latest release: 11 months ago - 8,848 downloads - 1,523 dependencies
songyizhe/cellranger 7.1.0

  • version: 0.17.0
Latest release: almost 2 years ago - 216 downloads - 518 dependencies
hoonbiolab/ccle-cga v0.2

  • version: 0.9.0, 0.15.2
Latest release: almost 2 years ago - 72 downloads - 586 dependencies
gmtscience/metaphlan4 4.0.6.1

a metaphlan4 docker with humann 3.5 suited for use in scitq or other systems (like nextflow)

  • version: 0.21.0, 0.20.0
Latest release: over 1 year ago - 170 downloads - 213 dependencies
seglh/vcfserver latest

https://github.com/moka-guys/vcfserver

  • version: 0.19.1
Latest release: almost 2 years ago - 124 downloads - 279 dependencies
nciccbr/ccrgb_annovar v1.0

  • version: 0.19.1
Latest release: almost 2 years ago - 127 downloads - 854 dependencies
khalidtab/vlq latest

  • version: 0.16.0.1
Latest release: almost 2 years ago - 110 downloads - 1,540 dependencies
jyyhh/colink-unifed-paddlefl 602

docker image for it

  • version: 0.21.0
Latest release: over 1 year ago - 31 downloads - 940 dependencies
davelabhub/msi 122722a

  • version: 0.18.0
Latest release: almost 2 years ago - 26 downloads - 360 dependencies
steepale/python_base 3.8.16

  • version: 0.20.0
Latest release: almost 2 years ago - 39 downloads - 81 dependencies
dmiller15/cutesv 1.0.13

  • version: 0.18.0
Latest release: over 2 years ago - 12 downloads - 11 dependencies
alexanrna/bonito 0.6.1_rerio

  • version: 0.19.1
Latest release: about 2 years ago - 12 downloads - 298 dependencies
developmentontheedge/galaxy-toolshed latest

  • version: 0.16.0.1
Latest release: almost 2 years ago - 13 downloads - 3,947 dependencies
naotokubota/zhenglab_rnaseq 0.4

  • version: 0.20.0
Latest release: 12 months ago - 41 downloads - 441 dependencies
prosyslab/bug-bench-mapdamage 20210806

  • version: 0.15.4
Latest release: over 3 years ago - 13 downloads - 71 dependencies
koki/velocyto 20221005

  • version: 0.19.1
Latest release: about 2 years ago - 22 downloads - 73 dependencies
hoyinchudfci/cga_hg38_blat_filter_tsv_update 1.3

  • version: 0.16.0.1
Latest release: over 1 year ago - 42 downloads - 16 dependencies
devindikec/tophat latest

  • version: 0.20.0
Latest release: almost 2 years ago - 11 downloads - 150 dependencies
intelliseqngs/gatk-4.1.9.0-hg38 1.0.0

  • version: 0.15.3
Latest release: over 3 years ago - 11 downloads - 677 dependencies
hoonbiolab/aa_tools v2.3.1.1

  • version: 0.17.0, 0.15.3
Latest release: about 3 years ago - 12 downloads - 432 dependencies
sbastkowski/quatradis-base latest

  • version: 0.20.0
Latest release: over 1 year ago - 43 downloads - 396 dependencies
sagnikbanerjee15/smrtlink 10.1.0.119588

  • version: 0.16.0.1
Latest release: almost 2 years ago - 14 downloads - 112 dependencies
negido/tapes v1.0

  • version: 0.20.0
Latest release: over 1 year ago - 110 downloads - 272 dependencies
hubentu/survirus latest

  • version: 0.20.0
Latest release: almost 2 years ago - 12 downloads - 49 dependencies
hugtools/hugtools_primer4hugbuild 0.3.0-beta-4

  • version: 0.15.1, 0.20.0
Latest release: almost 2 years ago - 15 downloads - 218 dependencies
intelliseqngs/task_pgx-get-rs-genotype 1.0.2

  • version: 0.18.0
Latest release: about 2 years ago - 154 downloads - 43 dependencies
kristinebilgrav/pb-cpgtool latest

  • version: 0.20.0
Latest release: almost 2 years ago - 11 downloads - 217 dependencies
dhspence/docker-baseimagewithconda latest

  • version: 0.16.0.1
Latest release: over 3 years ago - 11 downloads - 67 dependencies
prosyslab/bug-bench-cnvkit 20210806

  • version: 0.15.4
Latest release: over 3 years ago - 12 downloads - 45 dependencies
prosyslab/bug-bench-python3-gffutils 20210805

  • version: 0.15.4
Latest release: over 3 years ago - 10 downloads - 18 dependencies
gsneha/sv_caller latest

  • version: 0.19.1
Latest release: almost 2 years ago - 11 downloads - 53 dependencies
dmiller15/sniffles 2.0.3

  • version: 0.18.0
Latest release: over 2 years ago - 10 downloads - 7 dependencies
staphb/homopolish latest

  • version: 0.16.0
Latest release: over 1 year ago - 79 downloads - 36 dependencies
liutiantian/lrgasp_event2_metrics 0.9.1

  • version: 0.20.0
Latest release: over 1 year ago - 15 downloads - 282 dependencies
intelliseqngs/prodia_bcftools-1.7 1.0.0

  • version: 0.19.1
Latest release: about 2 years ago - 10 downloads - 57 dependencies
gene110/connor 0.6.1

  • version: 0.8.4
Latest release: almost 2 years ago - 8 downloads - 590 dependencies