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An open API service providing dependency metadata for docker images.

Package Usage : pypi : pysam

Explore the latest package usage data for pysam in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 422
Total downloads: 33,632,904

More details on packages.ecosyste.ms - JSON

intelliseqngs/task_sv-annot-filter 1.0.1

  • version: 0.19.1
Latest release: over 2 years ago - 165 downloads - 388 dependencies
dhspence/docker-manta 1.5.0

  • version: 0.11.2.2
Latest release: over 6 years ago - 180 downloads - 1,191 dependencies
ctomlins/supernova v2.1.1

  • version: 0.14.1
Latest release: almost 7 years ago - 127 downloads - 297 dependencies
dhspence/docker-hiccompare latest

  • version: 0.15.4, 0.12.0.1
Latest release: about 4 years ago - 126 downloads - 1,271 dependencies
qdidiscoveryservices/cellranger_mkfq 5.0.1

  • version: 0.16.0.1
Latest release: over 4 years ago - 161 downloads - 545 dependencies
kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

  • version: 0.15.2
Latest release: over 4 years ago - 114 downloads - 1,468 dependencies
intelliseqngs/anno-frequencies-exome_grch38 1.0.0-chrY-and-the-rest

  • version: 0.15.4
Latest release: over 5 years ago - 128 downloads - 334 dependencies
intelliseqngs/svtyper 1.0.0

  • version: 0.16.0.1
Latest release: about 5 years ago - 106 downloads - 299 dependencies
intelliseqngs/simple-repeats v0.1

  • version: 0.15.3
Latest release: over 5 years ago - 115 downloads - 345 dependencies
dhspence/docker-cnvkit latest

  • version: 0.14
Latest release: over 7 years ago - 113 downloads - 542 dependencies
biocontainers/smrtanalysis v020161126-deb_cv1

  • version: 0.10.0
Latest release: over 7 years ago - 105 downloads - 386 dependencies
intelliseqngs/dragmap-grch38-no-alt 1.1.0

  • version: 0.19.1
Latest release: over 2 years ago - 181 downloads - 558 dependencies
intelliseqngs/task_pdf-merge 1.2.1

  • version: 0.15.4
Latest release: about 5 years ago - 120 downloads - 357 dependencies
testalabgh/downstream signac-1.4.0

  • version: 0.19.1
Latest release: over 2 years ago - 485 downloads - 3,517 dependencies
dmiller15/vcfmerger2 0.9.3

  • version: 0.20.0
Latest release: over 2 years ago - 180 downloads - 865 dependencies
intelliseqngs/resources-pgx-polygenic 1.2.4

  • version: 0.15.3
Latest release: almost 2 years ago - 449 downloads - 1,059 dependencies
intelliseqngs/smoove-hg38 1.1.0

  • version: 0.15.3
Latest release: over 3 years ago - 96 downloads - 540 dependencies
intelliseqngs/variant-descriptor 1.0.0

  • version: 0.15.4
Latest release: over 5 years ago - 101 downloads - 334 dependencies
hoonbiolab/cnvkit v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 182 downloads - 817 dependencies
intelliseqngs/task_bam-metrics-hg38 1.0.2

  • version: 0.15.3
Latest release: over 2 years ago - 103 downloads - 1,144 dependencies
qdidiscoveryservices/docker-biopy latest

  • version: 0.18.0
Latest release: over 3 years ago - 100 downloads - 700 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 0.20.0
Latest release: over 2 years ago - 88 downloads - 494 dependencies
intelliseqngs/task_sv-cov-plot 1.0.0

  • version: 0.15.4
Latest release: about 4 years ago - 95 downloads - 597 dependencies
anastacia9/earth latest

  • version: 0.19.0
Latest release: about 3 years ago - 94 downloads - 31 dependencies
intelliseqngs/task_vcf-anno-civic-evidence 1.0.13

  • version: 0.19.1
Latest release: 3 months ago - 1,173 downloads - 333 dependencies
intelliseqngs/task_nipt-anno 1.2.0

  • version: 0.15.4
Latest release: almost 3 years ago - 110 downloads - 102 dependencies
gene110/dismir_keras 2.3.1

  • version: 0.19.1
Latest release: almost 3 years ago - 65 downloads - 481 dependencies
ctomlins/testuniv latest

  • version: 0.15.3
Latest release: over 3 years ago - 84 downloads - 536 dependencies
ctomlins/ragtag latest

  • version: 0.18.0
Latest release: over 3 years ago - 191 downloads - 12 dependencies
intelliseqngs/snpsift 1.2.0

  • version: 0.15.4
Latest release: over 2 years ago - 105 downloads - 41 dependencies
ctomlins/speedseq latest

  • version: 0.7.7
Latest release: almost 7 years ago - 81 downloads - 15 dependencies
tipsarin/popscle latest

  • version: 0.18.0
Latest release: over 3 years ago - 92 downloads - 54 dependencies
evolbioinfo/mapdamage v2.2.1

  • version: 0.16.0.1
Latest release: over 4 years ago - 88 downloads - 615 dependencies
luisas/rnaseq 0.3

  • version: 0.15.4
Latest release: over 5 years ago - 76 downloads - 571 dependencies
intelliseqngs/task_vcf-anno-custom 1.0.1

  • version: 0.15.4, 0.13
Latest release: almost 5 years ago - 68 downloads - 1,025 dependencies
anand7899/nanostat latest

  • version: 0.19.0
Latest release: about 3 years ago - 63 downloads - 220 dependencies
ctomlins/liftoff latest

  • version: 0.15.3, 0.16.0.1
Latest release: about 3 years ago - 301 downloads - 297 dependencies
intelliseqngs/acmg-ba1 latest

  • version: 0.15.3
Latest release: over 5 years ago - 69 downloads - 266 dependencies
docmanny/longqc 113f60c_fixed

  • version: 0.16.0.1
Latest release: over 3 years ago - 75 downloads - 152 dependencies
dhspence/docker-vep 93

  • version: 0.11.2.2
Latest release: over 6 years ago - 73 downloads - 1,191 dependencies
qdidiscoveryservices/bam_to_10x_counts_pandoc latest

  • version: 0.20.0
Latest release: over 2 years ago - 67 downloads - 964 dependencies
doejgi/trinityrnaseq-wdl 2.15.1

  • version: 0.20.0
Latest release: over 2 years ago - 798 downloads - 980 dependencies
intelliseqngs/mkfastq 0.0.2

  • version: 0.9.1, 0.15.4
Latest release: about 5 years ago - 87 downloads - 505 dependencies
genieusgenomics/pbsv 2.8.0

PacBio structural variant (SV) calling and analysis tools

  • version: 0.20.0
Latest release: over 2 years ago - 48 downloads - 384 dependencies
dhspence/encode-atac 1

encode atac pipeline docker image

  • version: 0.8.2.1
Latest release: over 6 years ago - 109 downloads - 705 dependencies
staphb/tostadas 4.0.0

  • version: 0.19.1
Latest release: 9 months ago - 789 downloads - 236 dependencies
ctomlins/supertellnova latest

  • version: 0.14.1
Latest release: over 4 years ago - 62 downloads - 309 dependencies
ctomlins/rna-seq-pipeline latest

  • version: 0.17.0
Latest release: over 3 years ago - 54 downloads - 498 dependencies
hoonbiolab/cnvpytor v1.1

  • version: 0.16.0.1, 0.15.3
Latest release: almost 4 years ago - 67 downloads - 807 dependencies
intelliseqngs/task_bed-liftover 1.0.0

  • version: 0.16.0.1
Latest release: over 4 years ago - 66 downloads - 257 dependencies
intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

  • version: 0.15.3
Latest release: over 2 years ago - 86 downloads - 1,049 dependencies
intelliseqngs/task_pgx-aldy 1.1.0

  • version: 0.18.0
Latest release: over 3 years ago - 64 downloads - 266 dependencies
intelliseqngs/smoove 1.0.0

  • version: 0.15.3
Latest release: almost 5 years ago - 53 downloads - 540 dependencies
chriswyatt/jcvi version2.0

  • version: 0.19.1
Latest release: almost 3 years ago - 188 downloads - 798 dependencies
mkolmogo/hapdiff 0.9

  • version: 0.19.1
Latest release: over 1 year ago - 2,921 downloads - 250 dependencies
almahmoud/galaxy-k8s dev-oct16

  • version: 0.16.0.1
Latest release: almost 5 years ago - 116 downloads - 3,475 dependencies
nbutter/gatk_tools latest

GATK and other bioinformatics tools packaged together.

  • version: 0.13
Latest release: almost 6 years ago - 57 downloads - 869 dependencies
mlepetit/cellranger 7.0.0

  • version: 0.16.0.1
Latest release: about 3 years ago - 57 downloads - 287 dependencies
evolbioinfo/vamb 3.0.2

https://github.com/RasmussenLab/vamb

  • version: 0.16.0.1
Latest release: over 4 years ago - 51 downloads - 175 dependencies
ctomlins/hicpro latest

  • version: 0.14
Latest release: over 6 years ago - 53 downloads - 690 dependencies
hoonbiolab/pepatac v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 70 downloads - 1,213 dependencies
intelliseqngs/clinvar-annotation 2.5.0

  • version: 0.18.0
Latest release: over 3 years ago - 133 downloads - 356 dependencies
biocontainers/python-pbalign v0.3.0-1-deb_cv1

  • version: 0.10.0
Latest release: over 7 years ago - 48 downloads - 192 dependencies
alexanrna/souporcell v2.4.0.final_v2

  • version: 0.16.0.1
Latest release: over 3 years ago - 146 downloads - 596 dependencies
intelliseqngs/clinvar-func-anno 2.0.3

  • version: 0.18.0
Latest release: about 3 years ago - 59 downloads - 357 dependencies
hoonbiolab/kallisto v1.2

  • version: 0.16.0.1
Latest release: almost 3 years ago - 60 downloads - 817 dependencies
intelliseqngs/task_pgx-polygenic-haplotype 1.4.2

  • version: 0.19.0
Latest release: 10 months ago - 902 downloads - 285 dependencies
hoonbiolab/mutect2 v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 49 downloads - 811 dependencies
hoonbiolab/gatk4 v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 53 downloads - 907 dependencies
hoonbiolab/amplicon_architect v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 61 downloads - 804 dependencies
ctomlins/rnaseqc latest

  • version: 0.17.0
Latest release: over 3 years ago - 67 downloads - 449 dependencies
intelliseqngs/task_gtc-to-vcf 1.1.0

  • version: 0.19.1
Latest release: over 2 years ago - 43 downloads - 635 dependencies
hoonbiolab/glass v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 41 downloads - 811 dependencies
intelliseqngs/annoghr 1.0.0

  • version: 0.15.4
Latest release: over 5 years ago - 39 downloads - 284 dependencies
nbutter/star latest

RNASeq_FASTQ-Counts

  • version: 0.7.7
Latest release: about 5 years ago - 56 downloads - 434 dependencies
parfumlune/hypersql-ansible-test pg-14.5

hypersql ansible packer provision test

  • version: 0.20.0
Latest release: over 2 years ago - 86 downloads - 642 dependencies
hoonbiolab/fastqc v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 48 downloads - 799 dependencies
hoonbiolab/svclone v1.1.1

  • version: 0.17.0
Latest release: over 2 years ago - 78 downloads - 420 dependencies
kcapd/wings-genomics-full latest

  • version: 0.15.2
Latest release: over 4 years ago - 43 downloads - 1,502 dependencies
hoonbiolab/multiqc v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 39 downloads - 819 dependencies
lokeshbio/support_6042 latest

  • version: 0.19.1
Latest release: over 2 years ago - 44 downloads - 182 dependencies
ctomlins/tellread_2022 latest

  • version: 0.15.3
Latest release: over 2 years ago - 44 downloads - 711 dependencies
intelliseqngs/task_vcf-select-var-somatic 1.0.0

  • version: 0.19.1
Latest release: over 2 years ago - 52 downloads - 388 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 108 downloads - 828 dependencies
intelliseqngs/prodia_task_vcf-beagle-postproc 1.0.1

  • version: 0.19.1
Latest release: over 2 years ago - 53 downloads - 388 dependencies
biocontainers/python-pbcommand v0.5.3-1-deb_cv1

  • version: 0.10.0
Latest release: over 7 years ago - 36 downloads - 180 dependencies
hoonbiolab/delly v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 44 downloads - 800 dependencies
intelliseqngs/task_imputing-quality 0.0.2

  • version: 0.15.4
Latest release: about 4 years ago - 40 downloads - 355 dependencies
hoonbiolab/vcf-kit v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 39 downloads - 840 dependencies
biocontainers/python-pbgenomicconsensus v2.1.0-1-deb_cv1

  • version: 0.10.0
Latest release: over 7 years ago - 38 downloads - 184 dependencies
dhspence/docker-fluff latest

  • version: 0.14
Latest release: over 6 years ago - 52 downloads - 493 dependencies
hoonbiolab/gatk4_scnv v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 36 downloads - 811 dependencies
dhspence/gtc2vcf latest

  • version: 0.15.3
Latest release: almost 6 years ago - 50 downloads - 161 dependencies
hoonbiolab/ascat v1.1

  • version: 0.16.0.1
Latest release: almost 4 years ago - 39 downloads - 792 dependencies