Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : pypi : pysam

Explore the latest package usage data for pysam in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 422
Total downloads: 33,632,904

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

  • version: 0.15.3
Latest release: 12 months ago - 31,988,536 downloads - 912 dependencies
google/deepvariant CL590726281-gpu

  • version: 0.20.0
Latest release: 12 months ago - 629,007 downloads - 296 dependencies
broadinstitute/oncotator 1.9.9.0

Oncotator images for releases from 1.9.0.0

  • version: 0.9.0
Latest release: over 6 years ago - 240,977 downloads - 535 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 0.20.0
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 0.15.3
Latest release: 11 months ago - 86,066 downloads - 912 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 0.16.0.1
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 0.15.0
Latest release: over 4 years ago - 24,573 downloads - 417 dependencies
snakemake/snakemake-tutorial v7.4.3

A container for running the official Snakemake tutorial

  • version: 0.19.0
Latest release: over 1 year ago - 9,867 downloads - 346 dependencies
bactopia/bactopia latest

  • version: 0.18.0
Latest release: almost 2 years ago - 6,888 downloads - 561 dependencies
njaved/tf_peaks_processing latest

tf_peaks_processing

  • version: 0.20.0
Latest release: almost 2 years ago - 4,351 downloads - 97 dependencies
qdidiscoveryservices/crispresso2-biopy 2.2.12-test

  • version: 0.19.1
Latest release: over 1 year ago - 5,160 downloads - 181 dependencies
almahmoud/galaxy bioc2023

  • version: 0.17.0, 0.16.0.1
Latest release: about 1 year ago - 2,440 downloads - 2,578 dependencies
google/deepconsensus polisher_v0.0.8_12122023

  • version: 0.19.0
Latest release: 12 months ago - 2,933 downloads - 178 dependencies
genomicmedicinesweden/gms-artic-nanopore 0c599b9

  • version: 0.16.0.1, 0.21.0
Latest release: about 1 year ago - 2,025 downloads - 153 dependencies
qdidiscoveryservices/bwa_samtools_biobambam2 latest

  • version: 0.16.0.1
Latest release: over 3 years ago - 1,678 downloads - 1,561 dependencies
almahmoud/galaxy-its latest

  • version: 0.16.0.1
Latest release: over 3 years ago - 872 downloads - 2,571 dependencies
intelliseqngs/task_vcf-anno-dbnsfp 1.3.0-chrY-and-the-rest

  • version: 0.15.4
Latest release: over 1 year ago - 60,110 downloads - 418 dependencies
intelliseqngs/task_vcf-anno-freq-exome 3.1.2-chrY-and-the-rest

  • version: 0.19.1
Latest release: over 1 year ago - 34,010 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-freq-genome 3.0.1-chrY-and-the-rest

  • version: 0.19.1
Latest release: almost 2 years ago - 32,281 downloads - 388 dependencies
intelliseqngs/task_bam-filter-mismatch 1.4.1

  • version: 0.15.3
Latest release: almost 2 years ago - 21,820 downloads - 1,138 dependencies
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

  • version: 0.15.3
Latest release: almost 2 years ago - 5,097 downloads - 1,140 dependencies
intelliseqngs/ubuntu-toolbox 18.04_v0.12

  • version: 0.15.3
Latest release: almost 5 years ago - 4,938 downloads - 294 dependencies
intelliseqngs/task_vcf-to-json-or-tsv 1.1.0

  • version: 0.21.0, 0.20.0
Latest release: about 1 year ago - 5,784 downloads - 233 dependencies
intelliseqngs/task_vcf-anno-func-var 1.6.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,962 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-func-gene 1.3.5

  • version: 0.18.0
Latest release: over 1 year ago - 3,027 downloads - 315 dependencies
intelliseqngs/task_vcf-acmg-pvs1 1.6.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,962 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp1 1.5.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,843 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pm5 1.6.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,917 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-ps1 1.6.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,785 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-ps3 1.6.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,653 downloads - 334 dependencies
intelliseqngs/task_vcf-acmg-bp5 1.3.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,902 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pm1 2.3.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,859 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pp2 1.6.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,879 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp4 2.2.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,873 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pp3 2.2.0

  • version: 0.19.1
Latest release: over 1 year ago - 2,835 downloads - 333 dependencies
intelliseqngs/gatk-4.1.9.0 1.0.0

  • version: 0.15.3
Latest release: about 4 years ago - 2,222 downloads - 967 dependencies
intelliseqngs/task_vcf-anno-cosmic 2.0.0

  • version: 0.15.3
Latest release: about 1 year ago - 2,498 downloads - 346 dependencies
intelliseqngs/pysam 1.0.2

  • version: 0.15.4
Latest release: almost 4 years ago - 2,118 downloads - 230 dependencies
intelliseqngs/task_vcf-detect-stats 2.2.0

  • version: 0.15.4
Latest release: over 2 years ago - 1,698 downloads - 233 dependencies
intelliseqngs/task_vcf-anno-civic 1.1.2

  • version: 0.19.1
Latest release: over 1 year ago - 1,834 downloads - 333 dependencies
dhspence/docker-smallrnaseq latest

  • version: 0.11.2.2
Latest release: over 6 years ago - 789 downloads - 911 dependencies
intelliseqngs/task_vcf-anno-hpo 1.0.5

  • version: 0.19.1
Latest release: over 1 year ago - 1,279 downloads - 235 dependencies
broadinstitute/pcawg_public latest

pcawg_public

  • version: 0.9.0, 0.7.5
Latest release: over 7 years ago - 780 downloads - 1,368 dependencies
zhiliz/autoreporting v1.0.2

  • version: 0.20.0
Latest release: over 1 year ago - 20,044 downloads - 251 dependencies
intelliseqngs/task_bed-to-interval-list 1.1.5

  • version: 0.15.3
Latest release: almost 2 years ago - 593 downloads - 1,057 dependencies
intelliseqngs/task_vcf-anno-snpeff-grch38.107 1.1.0

  • version: 0.19.1
Latest release: over 1 year ago - 4,811 downloads - 492 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 0.15.3
Latest release: almost 2 years ago - 403 downloads - 849 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 0.17.0
Latest release: about 1 year ago - 2,811 downloads - 1,464 dependencies
gesiscss/binder-imperial-2dgenomics-2dfacility-2dscanpy-2dnotebook-2dimage-6f44d6 e9423c0c1f8a91c5a06d2023b6abfeee4fbe4c0b

  • version: 0.16.0.1
Latest release: over 3 years ago - 351 downloads - 2,676 dependencies
nfcore/universc 1.2.5.1

Mirror of container for UniverSC: a flexible cross-platform SC data processing pipeline 

  • version: 0.12.0.1
Latest release: almost 2 years ago - 646 downloads - 2,033 dependencies
evolbioinfo/ngphylogeny-galaxy latest

This repository contains tools and workflows used in NGPhylogeny.fr via galaxy.

  • version: 0.14.1
Latest release: over 3 years ago - 329 downloads - 2,651 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 0.9.1, 0.13
Latest release: over 4 years ago - 312 downloads - 1,305 dependencies
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

  • version: 0.15.3
Latest release: almost 2 years ago - 304 downloads - 1,142 dependencies
y9ch/bidseq rice

🧪 BID-seq for detecting pseudouridine modification on RNA

  • version: 0.20.0
Latest release: over 1 year ago - 588 downloads - 251 dependencies
intelliseqngs/gsort 1.0.1

  • version: 0.15.4
Latest release: over 1 year ago - 319 downloads - 315 dependencies
hoonbiolab/align_dna v1.3

  • version: 0.16.0.1
Latest release: about 3 years ago - 275 downloads - 794 dependencies
doejgi/multidap git-d32491b3

  • version: 0.19.0
Latest release: over 1 year ago - 537 downloads - 101 dependencies
weisburd/expansion-hunter-v2 latest

  • version: 0.20.0
Latest release: almost 2 years ago - 201 downloads - 373 dependencies
hoonbiolab/hmftools v1.1

  • version: 0.17.0
Latest release: about 3 years ago - 1,211 downloads - 693 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 0.20.0
Latest release: about 2 years ago - 172 downloads - 962 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 0.15.3
Latest release: about 3 years ago - 165 downloads - 1,057 dependencies
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

  • version: 0.9.0
Latest release: almost 7 years ago - 246 downloads - 865 dependencies
intelliseqngs/prodia_task_imputing-ldproxy 1.0.4-chrY-and-the-rest

  • version: 0.20.0
Latest release: over 1 year ago - 459 downloads - 252 dependencies
intelliseqngs/smoove-grch38-no-alt 1.1.0

  • version: 0.15.3
Latest release: about 3 years ago - 194 downloads - 540 dependencies
chgyi/bio 3.5.1

  • version: 0.15.0
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
ctomlins/testuniv_update latest

  • version: 0.15.3
Latest release: almost 4 years ago - 153 downloads - 758 dependencies
intelliseqngs/lumpy 1.0.0

  • version: 0.15.4
Latest release: over 4 years ago - 150 downloads - 377 dependencies
nfcore/spaceranger 2.1.0

  • version: 0.16.0.1
Latest release: over 1 year ago - 1,446 downloads - 181 dependencies
broadinstitute/pcawg_full 7

  • version: 0.12.0.1, 0.9.0
Latest release: about 7 years ago - 146 downloads - 889 dependencies
dhspence/docker-chipseq v1.0

  • version: 0.14
Latest release: over 6 years ago - 143 downloads - 391 dependencies
evolbioinfo/covid-align latest

COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM

  • version: 0.14.1
Latest release: over 4 years ago - 144 downloads - 2,762 dependencies
intelliseqngs/task_pgx-cyrius 1.1.0

  • version: 0.15.4
Latest release: over 2 years ago - 144 downloads - 257 dependencies
hoonbiolab/aasuite v0.1477.3

  • version: 0.15.2, 0.18.0
Latest release: over 1 year ago - 146 downloads - 681 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 0.15.3
Latest release: almost 2 years ago - 131 downloads - 1,081 dependencies
hoonbiolab/hl_base v1.2

  • version: 0.19.1
Latest release: about 2 years ago - 136 downloads - 873 dependencies
chgyi/metaware_rna_denovo latest

  • version: 0.15.2
Latest release: over 5 years ago - 132 downloads - 2,095 dependencies
intelliseqngs/task_fq-bowtie 1.1.0

  • version: 0.18.0
Latest release: over 2 years ago - 134 downloads - 356 dependencies
intelliseqngs/task_sv-anno-panel 1.1.0

  • version: 0.15.4
Latest release: almost 4 years ago - 154 downloads - 354 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 0.13
Latest release: over 4 years ago - 131 downloads - 928 dependencies
intelliseqngs/gatk-4.2.4.1 1.0.1

  • version: 0.15.3
Latest release: almost 2 years ago - 161 downloads - 1,118 dependencies