broadinstitute/horsefish bacterialingest_v1.0.09-alpha

intelliseqngs/task_vcf-anno-dbnsfp 1.3.0-chrY-and-the-rest

intelliseqngs/task_vcf-anno-freq-exome 3.1.2-chrY-and-the-rest

intelliseqngs/task_vcf-anno-freq-genome 3.0.1-chrY-and-the-rest

intelliseqngs/task_bam-filter-mismatch 1.4.1

intelliseqngs/reports 4.0.44

intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

intelliseqngs/task_vcf-to-json-or-tsv 1.1.0

intelliseqngs/task_resources-kit 1.5.0

intelliseqngs/multiqc 2.0.2

intelliseqngs/task_vcf-anno-func-var 1.6.0

intelliseqngs/task_vcf-anno-func-gene 1.3.5

intelliseqngs/igv 3.0.3

intelliseqngs/task_vcf-acmg-pvs1 2.0.0

intelliseqngs/task_vcf-acmg-bp1 2.0.0

intelliseqngs/task_vcf-acmg-pm5 2.0.0

intelliseqngs/task_vcf-acmg-ps1 2.0.0

intelliseqngs/task_vcf-acmg-ps3 2.0.0

intelliseqngs/task_vcf-acmg-bp5 2.0.2

intelliseqngs/task_vcf-acmg-pm1 3.0.0

intelliseqngs/task_vcf-acmg-pp2 2.0.0

intelliseqngs/task_vcf-acmg-bp4 3.0.0

intelliseqngs/task_vcf-acmg-pp3 3.0.0

intelliseqngs/task_panel-generate 2.0.1

intelliseqngs/gatk-4.1.9.0 1.0.0

intelliseqngs/task_vcf-anno-cosmic 2.1.6

intelliseqngs/task_json-prioritize-var 1.1.9

intelliseqngs/task_vcf-anno-civic 1.2.7

intelliseqngs/mitolib 2.1.0

intelliseqngs/task_vcf-anno-hpo 1.0.5

intelliseqngs/task_bed-to-interval-list 1.1.5

intelliseqngs/task_vcf-anno-snpeff-grch38.107 1.1.0

intelliseqngs/report_pgx 1.2.0

intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

intelliseqngs/gsort 1.0.1

intelliseqngs/report-prs 1.0.9

intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

intelliseqngs/prodia_task_imputing-ldproxy 1.0.4-chrY-and-the-rest

intelliseqngs/smoove-grch38-no-alt 1.1.0

intelliseqngs/task_sv-breaks-pos 1.0.2

intelliseqngs/lumpy 1.0.0

intelliseqngs/task_rna-seq-concat-summary-se 1.1.0

intelliseqngs/task_pgx-cyrius 1.1.0

intelliseqngs/task_sv-report 1.0.0

intelliseqngs/task_fq-bowtie 1.1.0

intelliseqngs/task_sv-anno-panel 1.1.0

intelliseqngs/collect-hs-metrics 1.0.0

intelliseqngs/gatk-4.2.4.1 1.0.1

intelliseqngs/task_sv-annot-filter 1.0.1

intelliseqngs/duphold-hg38 1.1.1

intelliseqngs/task_simulate-neat-grch38-chr-wise 1.0.0-chrY-and-the-rest

intelliseqngs/quality-check v0.1

intelliseqngs/anno-frequencies-exome_grch38 1.0.0-chrY-and-the-rest

intelliseqngs/svtyper 1.0.0

intelliseqngs/simple-repeats v0.1

intelliseqngs/report_rna_seq 1.0.4

intelliseqngs/dragmap-grch38-no-alt 1.1.0

intelliseqngs/task_simulate-neat-grch38-no-alt-chr-wise 1.0.0-chrY-and-the-rest

intelliseqngs/task_pdf-merge 1.2.1

doejgi/miniwdl 1.11.0

Includes shellcheck for linting of shell scripts within WDL "command" stanzas.

intelliseqngs/resources-pgx-polygenic 1.2.4

intelliseqngs/smoove-hg38 1.1.0

intelliseqngs/variant-descriptor 1.0.0

intelliseqngs/report-variants-from-vcf 1.0.4

intelliseqngs/task_nipt-illumina-plot 2.0.6

intelliseqngs/task_bam-metrics-hg38 1.0.2

intelliseqngs/task_rna-seq-count-concat 1.0.0

intelliseqngs/task_rna-seq-align-stats-bwa 1.0.0

intelliseqngs/task_microarray-qc-plots 1.0.0

intelliseqngs/task_sv-cov-plot 1.0.0

intelliseqngs/task_vcf-anno-civic-evidence 1.0.13

intelliseqngs/task_nipt-anno 1.2.0

intelliseqngs/java minimal-openjdk12_1.0.0

intelliseqngs/snpsift 1.2.0

intelliseqngs/task_translate-report 1.0.0

intelliseqngs/task_bam-exon-depth 1.0.4

intelliseqngs/minimal-openjdk11 3.0.1

intelliseqngs/fastqc-basic-statistics single-end_v0.1

intelliseqngs/task_pgx-merge-genotypes 1.2.0

intelliseqngs/duphold-grch38-no-alt 1.1.1

intelliseqngs/task_vcf-anno-custom 1.0.1

intelliseqngs/concat-summary-files paired-end_v0.1

intelliseqngs/task_qc-fq-mapping-grch38-no-alt 1.0.0

intelliseqngs/ensembl-cosmic-to-bed 1.0.1

intelliseqngs/pgx-phase-beagle 1.1.0

intelliseqngs/mkfastq 0.0.2

intelliseqngs/reporting-csv-generator v0.1

intelliseqngs/task_bed-liftover 1.0.0

intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

intelliseqngs/task_pgx-aldy 1.1.0

doejgi/wdl-test 2023-09-07

intelliseqngs/smoove 1.0.0