Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : pypi : biopython

Explore the latest package usage data for biopython in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 408
Total downloads: 32,873,459

More details on packages.ecosyste.ms - JSON

dhspence/docker-cnvkit latest

  • version: 1.66
Latest release: almost 7 years ago - 97 downloads - 542 dependencies
thavlik/clean-pdbs latest

  • version: 1.76
Latest release: over 4 years ago - 97 downloads - 456 dependencies
intelliseqngs/dragmap-grch38-no-alt 1.1.0

  • version: 1.79
Latest release: almost 2 years ago - 158 downloads - 558 dependencies
luisas/af2_msa 2

  • version: 1.79
Latest release: about 2 years ago - 107 downloads - 350 dependencies
intelliseqngs/task_pdf-merge 1.2.1

  • version: 1.76
Latest release: over 4 years ago - 96 downloads - 357 dependencies
gesiscss/binder-dmnfarrell-2depitopepredict-288411 6ac74d8dc24922bda115506246814aa7d698e885

  • version: 1.78
Latest release: almost 4 years ago - 90 downloads - 1,751 dependencies
vanessa/encode-demo-workflow latest

  • version: 1.74
Latest release: about 5 years ago - 87 downloads - 492 dependencies
intelliseqngs/resources-pgx-polygenic 1.2.4

  • version: 1.76
Latest release: about 1 year ago - 300 downloads - 1,059 dependencies
intelliseqngs/variant-descriptor 1.0.0

  • version: 1.76
Latest release: over 4 years ago - 87 downloads - 334 dependencies
mirekphd/ml-feature-store 20190909

  • version: 1.73
Latest release: about 5 years ago - 83 downloads - 3,188 dependencies
hoonbiolab/cnvkit v1.1

  • version: 1.78
Latest release: about 3 years ago - 83 downloads - 817 dependencies
luisas/af2_split 2

  • version: 1.79
Latest release: about 2 years ago - 80 downloads - 311 dependencies
intelliseqngs/task_bam-metrics-hg38 1.0.2

  • version: 1.76
Latest release: almost 2 years ago - 79 downloads - 1,144 dependencies
qdidiscoveryservices/docker-biopy latest

  • version: 1.79
Latest release: almost 3 years ago - 80 downloads - 700 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 1.80
Latest release: almost 2 years ago - 80 downloads - 494 dependencies
intelliseqngs/task_sv-cov-plot 1.0.0

  • version: 1.76
Latest release: over 3 years ago - 83 downloads - 597 dependencies
hnh0303/mask_gubbins_aln 3.3

  • version: 1.79
Latest release: almost 2 years ago - 75 downloads - 8 dependencies
anastacia9/earth latest

  • version: 1.79
Latest release: over 2 years ago - 75 downloads - 31 dependencies
genomehubs/mitohifi latest

  • version: 1.73, 1.79, 1.70
Latest release: almost 2 years ago - 108 downloads - 670 dependencies
intelliseqngs/task_vcf-anno-civic-evidence 1.0.4

  • version: 1.79
Latest release: over 1 year ago - 514 downloads - 333 dependencies
luisas/structural_regression 21

  • version: 1.64
Latest release: about 2 years ago - 113 downloads - 416 dependencies
intelliseqngs/task_nipt-anno 1.2.0

  • version: 1.76
Latest release: about 2 years ago - 71 downloads - 102 dependencies
celestia1/metagenome 2.1.1

  • version: 1.78
Latest release: almost 4 years ago - 77 downloads - 33 dependencies
docmanny/mitohifi c06ed3e

  • version: 1.79
Latest release: almost 3 years ago - 71 downloads - 53 dependencies
theoaphidian/kraken-bracken latest

A container with all the tools to preprocess metagenome samples with kraken and bracken.

  • version: 1.80
Latest release: almost 2 years ago - 142 downloads - 345 dependencies
intelliseqngs/snpsift 1.2.0

  • version: 1.76
Latest release: over 1 year ago - 78 downloads - 41 dependencies
ebelter/cactus 2.5.0-20.04

  • version: 1.80
Latest release: over 1 year ago - 435 downloads - 171 dependencies
vanessa/cseq latest

a sequence analysis workflow for low-input nanopore sequencing

  • version: 1.71
Latest release: over 6 years ago - 62 downloads - 265 dependencies
gesiscss/binder-kellylab-2dfireworks-8b707c 22faad6ab0c267c1f170517d48351a2091cfa3b5

  • version: 1.78, 1.71
Latest release: over 3 years ago - 60 downloads - 1,652 dependencies
intelliseqngs/task_vcf-anno-custom 1.0.1

  • version: 1.70
Latest release: about 4 years ago - 58 downloads - 1,025 dependencies
evolbioinfo/pcoc v898c138

PCOC is a convergent substitution detection tool

  • version: 1.70
Latest release: over 6 years ago - 55 downloads - 339 dependencies
anand7899/nanostat latest

  • version: 1.79
Latest release: over 2 years ago - 58 downloads - 220 dependencies
ctomlins/liftoff latest

  • version: 1.78, 1.76
Latest release: over 2 years ago - 97 downloads - 297 dependencies
pkufjhdocker/rid-kit latest

This is the repository for doing reinforced dynamics in molecular simulation.

  • version: 1.79
Latest release: about 2 years ago - 58 downloads - 557 dependencies
evolbioinfo/shorah v1.99.2

https://github.com/cbg-ethz/shorah/

  • version: 1.76
Latest release: almost 3 years ago - 55 downloads - 219 dependencies
intelliseqngs/mkfastq 0.0.2

  • version: 1.76
Latest release: over 4 years ago - 52 downloads - 505 dependencies
dhspence/encode-atac 1

encode atac pipeline docker image

  • version: 1.72
Latest release: almost 6 years ago - 55 downloads - 705 dependencies
staphb/tostadas latest

  • version: 1.80
Latest release: almost 2 years ago - 192 downloads - 236 dependencies
lt4inc/jupyter-server tmp

  • version: 1.79
Latest release: almost 2 years ago - 53 downloads - 3,480 dependencies
evolbioinfo/jphmm_tools v0.1.4

  • version: 1.78
Latest release: over 3 years ago - 53 downloads - 116 dependencies
intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

  • version: 1.76
Latest release: almost 2 years ago - 58 downloads - 1,049 dependencies
celestia1/viralrecall 0.1.1

  • version: 1.72, 1.78
Latest release: almost 4 years ago - 54 downloads - 220 dependencies
chriswyatt/jcvi version2.0

  • version: 1.79
Latest release: about 2 years ago - 121 downloads - 798 dependencies
maestsi/nf-m6anet v1

  • version: 1.78
Latest release: almost 2 years ago - 54 downloads - 645 dependencies
gesiscss/binder-eds-2duga-2dcbio-2dx835-2dsp20-583b76 2c3b1f0d82daf3e037e518beb34ee4fa8a0a6ef5

  • version: 1.76
Latest release: over 4 years ago - 45 downloads - 1,629 dependencies
kbase/mgapi testing2

  • version: 1.72
Latest release: almost 3 years ago - 47 downloads - 952 dependencies
nbutter/gatk_tools latest

GATK and other bioinformatics tools packaged together.

  • version: 1.70
Latest release: over 5 years ago - 44 downloads - 869 dependencies
intelliseqngs/fastqc-overrepresented v0.1

  • version: 1.76
Latest release: almost 5 years ago - 44 downloads - 282 dependencies
evolbioinfo/lsd-web latest

Least-Squares Dating (LSD) estimates rates and dates from phylogenies using least-squares method

  • version: 1.73
Latest release: almost 6 years ago - 43 downloads - 339 dependencies
biocontainers/python3-biopython-sql v1.68dfsg-3-deb_cv1

  • version: 1.68
Latest release: over 6 years ago - 42 downloads - 163 dependencies
sagnikbanerjee15/codan 1.2

  • version: 1.80
Latest release: almost 2 years ago - 43 downloads - 179 dependencies
gesiscss/binder-bioexcel-2dbiobb-5fwf-5fpmx-5ftutorial-51091b b60950fd40996363bb21e2404f9989cccd69ecfb

  • version: 1.78
Latest release: over 3 years ago - 46 downloads - 1,610 dependencies
evolbioinfo/vivan v0.43

ViVan - Viral Variance Analysis http://vivan.tau.ac.il/index.php

  • version: 1.71
Latest release: over 6 years ago - 41 downloads - 190 dependencies
intelliseqngs/clinvar-annotation 2.5.0

  • version: 1.79
Latest release: over 2 years ago - 47 downloads - 356 dependencies
doejgi/jaws-blastn 1.0.0

  • version: 1.79
Latest release: almost 3 years ago - 41 downloads - 210 dependencies
intelliseqngs/clinvar-func-anno 2.0.3

  • version: 1.79
Latest release: over 2 years ago - 39 downloads - 357 dependencies
veitveit/proteoformquant latest

  • version: 1.78
Latest release: almost 4 years ago - 39 downloads - 744 dependencies
jfcal/bibliovigilance 20230609105011fe80a1

  • version: 1.78, 1.79
Latest release: over 1 year ago - 122 downloads - 241 dependencies
biocontainers/python-biopython-sql v1.68dfsg-3-deb_cv1

  • version: 1.68
Latest release: over 6 years ago - 39 downloads - 152 dependencies
tercen/tracer_docker_operator latest

  • version: 1.77
Latest release: about 2 years ago - 37 downloads - 826 dependencies
docmanny/funannotate-docker latest

  • version: 1.79
Latest release: about 2 years ago - 36 downloads - 287 dependencies
parfumlune/hypersql-ansible-test pg-14.5

hypersql ansible packer provision test

  • version: 1.79
Latest release: almost 2 years ago - 51 downloads - 642 dependencies
dhspence/docker-crispresso latest

  • version: 1.70
Latest release: almost 7 years ago - 34 downloads - 588 dependencies
kcapd/wings-genomics-full latest

  • version: 1.76
Latest release: almost 4 years ago - 33 downloads - 1,502 dependencies
tercen/tracer_docker_operator_base 1.0.0

  • version: 1.77
Latest release: over 2 years ago - 36 downloads - 812 dependencies
dolphinnext/beenet 1.0

  • version: 1.80
Latest release: almost 2 years ago - 35 downloads - 345 dependencies
luisas/cpc2 latest

  • version: 1.76
Latest release: about 4 years ago - 34 downloads - 273 dependencies
nfcore/proteinfold_colabfold 1.1.0

  • version: 1.79
Latest release: over 1 year ago - 3,516 downloads - 256 dependencies
mirekphd/tst-ml-gpu-py36-cuda8-failing 001766c55ca8

  • version: 1.72
Latest release: about 6 years ago - 33 downloads - 2,084 dependencies
intelliseqngs/task_vcf-select-var-somatic 1.0.0

  • version: 1.79
Latest release: almost 2 years ago - 44 downloads - 388 dependencies
nfcore/proteinfold_alphafold2_standard 1.1.0

  • version: 1.79
Latest release: over 1 year ago - 478 downloads - 242 dependencies
intelliseqngs/prodia_task_vcf-beagle-postproc 1.0.1

  • version: 1.79
Latest release: about 2 years ago - 39 downloads - 388 dependencies
intelliseqngs/task_imputing-quality 0.0.2

  • version: 1.76
Latest release: over 3 years ago - 30 downloads - 355 dependencies
vaidyasm/kaggle-python latest

  • version: 1.76
Latest release: almost 5 years ago - 29 downloads - 2,567 dependencies
mirekphd/gbdt-gpu-docker-devel latest

  • version: 1.71
Latest release: over 6 years ago - 29 downloads - 1,024 dependencies
hoonbiolab/vcf-kit v1.1

  • version: 1.79
Latest release: about 3 years ago - 29 downloads - 840 dependencies
kbase/narrativereaper develop

Narrative reaper

  • version: 1.71
Latest release: over 5 years ago - 29 downloads - 385 dependencies
gesiscss/binder-ajoorabchi-2dwp2cochrane-c9d31c f6bed709376a2174a1a803cd2b37a6ecfb43d2ec

  • version: 1.76
Latest release: almost 5 years ago - 28 downloads - 3,492 dependencies
dockerymh/promod3 0.0.3

  • version: 1.79
Latest release: over 2 years ago - 33 downloads - 286 dependencies
almahmoud/jbrowse newest

  • version: 1.72
Latest release: almost 5 years ago - 30 downloads - 1,216 dependencies
jhandl/scipion-tool-dev scipion-em-eman2

  • version: 1.76
Latest release: almost 2 years ago - 38 downloads - 1,957 dependencies
gesiscss/binder-carjed-2ddoomsayer-85bbc5 651e939aaf1eaaf8af63957b67b7b5146ab90d6e

  • version: 1.76
Latest release: almost 5 years ago - 28 downloads - 1,660 dependencies
ghhenry/curio-seeker-pipeline latest

  • version: 1.80
Latest release: almost 2 years ago - 27 downloads - 926 dependencies
ddiazescandon/funannotate 1.8.15

nextgenusfs/funannotate:latest with eukaryta db, phyml for dn/ds and a conda installation

  • version: 1.81, 1.79
Latest release: over 1 year ago - 52 downloads - 338 dependencies
intelliseqngs/ubuntu-toolbox-22.04 1.0.3

  • version: 1.81, 1.79
Latest release: over 1 year ago - 55 downloads - 389 dependencies
intelliseqngs/task_vcf-beagle-merge 1.0.1

  • version: 1.79
Latest release: almost 2 years ago - 56 downloads - 388 dependencies
intelliseqngs/task_json-prioritize-var-somatic 1.0.0

  • version: 1.79
Latest release: almost 2 years ago - 45 downloads - 388 dependencies
gene110/neotools v0.0-nhan

  • version: 1.79
Latest release: almost 2 years ago - 18 downloads - 508 dependencies
kbase/runtester latest

  • version: 1.72
Latest release: over 5 years ago - 45 downloads - 950 dependencies
dockerymh/loopopt 0.0.3

  • version: 1.79
Latest release: over 2 years ago - 39 downloads - 587 dependencies