Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : maven : org.broadinstitute.hellbender.Main:gatk-package

Explore the latest package usage data for org.broadinstitute.hellbender.Main:gatk-package in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 163
Total downloads: 74,424,344

More details on packages.ecosyste.ms - JSON

bokebiotech/qcpipe v6

  • version: 4.1.4.1-spark, 4.1.4.1-local
Latest release: over 1 year ago - 115 downloads - 1,186 dependencies
hoonbiolab/freebayes v1.1

  • version: 4.1.8.1-local
Latest release: about 3 years ago - 24 downloads - 682 dependencies
intelliseqngs/prodia_gatk-4.2.0.0 1.0.1

  • version: 4.2.0.0-spark, 4.2.0.0-local
Latest release: almost 2 years ago - 25 downloads - 1,014 dependencies
hoonbiolab/bcftools v1.1

  • version: 4.1.8.1-local
Latest release: about 3 years ago - 23 downloads - 681 dependencies
man4ish/demuxlet_v3 latest

  • version: 4.1.2.0-37-g90fd39b-SNAPSHOT-spark, 4.1.2.0-local, 4.1.2.0-spark, 4.1.2.0-37-g90fd39b-SNAPSHOT-local
Latest release: almost 2 years ago - 33 downloads - 618 dependencies
keithgraham5/cnvrobot_v4_2 latest

  • version: 4.2.6.0-local
Latest release: almost 2 years ago - 21 downloads - 685 dependencies
hoonbiolab/fastq v1.0

  • version: 4.1.0.0-local, 4.1.0.0-spark, 4.1.8.0-local
Latest release: over 3 years ago - 19 downloads - 822 dependencies
hoonbiolab/telomeasure v1.1

  • version: 4.1.8.1-local
Latest release: almost 3 years ago - 22 downloads - 814 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: 4.2.6.1-spark, 4.2.6.1-local
Latest release: over 1 year ago - 15 downloads - 1,069 dependencies
mrkevindc/varscan latest

  • version: 4.3.0.0-spark, 4.3.0.0-local
Latest release: almost 2 years ago - 66 downloads - 924 dependencies
bryoinformatics/variant-id v1.0.0

A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).

  • version: 4.3.0.0-local
Latest release: over 1 year ago - 93 downloads - 479 dependencies
mrkevindc/mutect2 latest

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: almost 2 years ago - 36 downloads - 912 dependencies
hoonbiolab/svtools v0.4.0

  • version: 4.1.8.1-local
Latest release: 11 months ago - 23 downloads - 681 dependencies
nahyunkong/mito v6

  • version: 4.3.0.0-local
Latest release: over 1 year ago - 11,361 downloads - 2,488 dependencies
hoonbiolab/annovar v1.0

  • version: 4.1.8.1-local
Latest release: almost 3 years ago - 18 downloads - 810 dependencies
hoonbiolab/sratools v1.1

  • version: 4.1.8.1-local
Latest release: about 3 years ago - 17 downloads - 652 dependencies
hoonbiolab/testbase v1.1

  • version: 4.1.8.1-local
Latest release: about 3 years ago - 15 downloads - 617 dependencies
yiluxiangbei/pumpkin-gene-genomealign 20220216

  • version: 4.2.4.0-spark, 4.2.4.0-local
Latest release: almost 3 years ago - 14 downloads - 2,116 dependencies
hoonbiolab/fastp v1.1

  • version: 4.1.8.1-local
Latest release: about 3 years ago - 16 downloads - 792 dependencies
intelliseqngs/gatk_4.1.6.0 1.1.0

  • version: 4.1.6.0-local, 4.1.6.0-spark
Latest release: over 4 years ago - 13 downloads - 842 dependencies
oriolpich/rsem latest

  • version: 4.1.7.0-local
Latest release: almost 2 years ago - 18 downloads - 432 dependencies
intelliseqngs/prodia_task_vcf-concat-beagle 1.0.0

  • version: 4.2.0.0-local, 4.2.0.0-spark
Latest release: about 2 years ago - 14 downloads - 1,019 dependencies
intelliseqngs/gatk-4.1.9.0-hg38 1.0.0

  • version: 4.1.9.0-SNAPSHOT-spark, 4.1.9.0-SNAPSHOT-local
Latest release: over 3 years ago - 11 downloads - 677 dependencies
hoonbiolab/pyclone v1.1

  • version: 4.1.8.1-local
Latest release: almost 3 years ago - 12 downloads - 675 dependencies
intelliseqngs/gatk-4.3.0.0 1.0.0

  • version: 4.3.0.0-spark, 4.3.0.0-local
Latest release: almost 2 years ago - 1,269 downloads - 1,038 dependencies
yiluxiangbei/pumpkin-gatk-notebook 1.0

  • version: 4.2.2.0-local, 4.2.2.0-spark
Latest release: about 3 years ago - 10 downloads - 1,570 dependencies
intelliseqngs/broad-institute-hg38 1.0.0

  • version: 4.1.6.0-spark, 4.1.6.0-local
Latest release: over 4 years ago - 10 downloads - 930 dependencies
intelliseqngs/gatk-4.1.6.0-grch38-no-alt 1.0.0

  • version: 4.1.6.0-local, 4.1.6.0-spark
Latest release: over 4 years ago - 10 downloads - 437 dependencies
ctomlins/tseq latest

  • version: 4.1.4.0-local
Latest release: about 4 years ago - 10 downloads - 536 dependencies
ctomlins/tseq_2 latest

  • version: 4.1.4.0-local
Latest release: about 4 years ago - 10 downloads - 538 dependencies
hoonbiolab/align_dan v1.3

  • version: 4.1.8.1-local
Latest release: about 3 years ago - 8 downloads - 466 dependencies
yiluxiangbei/pumpkin-gatk 1.0

  • version: 4.2.2.0-spark, 4.2.2.0-local
Latest release: about 3 years ago - 9 downloads - 587 dependencies
intelliseqngs/gatk-4.1.9.0-grch38-no-alt 1.0.0

  • version: 4.1.9.0-SNAPSHOT-spark, 4.1.9.0-SNAPSHOT-local
Latest release: almost 4 years ago - 9 downloads - 677 dependencies
repbioinfo/detectseq latest

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 1 year ago - 11 downloads - 2,183 dependencies
hoonbiolab/clustersv v1.1

  • version: 4.1.8.1-local
Latest release: over 2 years ago - 10 downloads - 718 dependencies
yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

  • version: 4.3.0.0-local
Latest release: over 1 year ago - 119 downloads - 1,068 dependencies
hoonbiolab/msisensor-pro v1.0

  • version: 4.1.8.1-local
Latest release: over 2 years ago - 9 downloads - 688 dependencies
cloxd/ctat-mutations 3.3.1

  • version: 4.1.9.0-local, 4.1.9.0-spark
Latest release: over 1 year ago - 9 downloads - 533 dependencies
bioxfu/ddngs latest

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 1 year ago - 10 downloads - 1,055 dependencies
barryd237/week2 latest

  • version: 4.3.0.0-local
Latest release: almost 2 years ago - 12 downloads - 449 dependencies
p4rkerw/vartrix 1.0

  • version: 4.2.0.0-local, 4.2.0.0-spark
Latest release: over 1 year ago - 11 downloads - 1,020 dependencies
amcooksey/nal_rna_seq_annotation_pipeline testing

  • version: 4.1.6.0-local, 4.1.6.0-spark
Latest release: almost 2 years ago - 10 downloads - 865 dependencies
philiplin1212/gatk latest

  • version: 4.4.0.0-spark, 4.4.0.0-local
Latest release: over 1 year ago - 8 downloads - 1,137 dependencies
wangyanmin/fastseq-pipline latest

  • version: 4.1.1.0-local, 4.1.1.0-spark
Latest release: over 1 year ago - 9 downloads - 813 dependencies
intelliseqngs/gatk-4.3.0.0-hg38 1.0.0

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: almost 2 years ago - 1,990 downloads - 1,038 dependencies
qdidiscoveryservices/bamqc_compiler v2.1

  • version: 4.3.0.0-spark, 4.3.0.0-local
Latest release: about 1 year ago - 536 downloads - 1,179 dependencies
intelliseqngs/gatk-4.3.0.0-grch38-no-alt 1.0.0

  • version: 4.3.0.0-spark, 4.3.0.0-local
Latest release: almost 2 years ago - 760 downloads - 1,038 dependencies
jlund256/rna_variants latest

  • version: 4.1.7.0-spark, 4.1.7.0-local
Latest release: about 1 year ago - 288 downloads - 752 dependencies
fionahak/gatk_genotube v0.0.1

  • version: 4.3.0.0-local
Latest release: over 1 year ago - 71 downloads - 303 dependencies
gru4/scan2workinghg38 latest

  • version: 4.3.0.0-local
Latest release: over 1 year ago - 59 downloads - 776 dependencies
gru4/scan2fixedhg38 latest

  • version: 4.3.0.0-local
Latest release: over 1 year ago - 55 downloads - 777 dependencies
dabbleofdevops/nextneopi 20230817

  • version: 4.2.6.1-local
Latest release: over 1 year ago - 47 downloads - 499 dependencies
skchronicles/genome-seek_trim_map latest

Official docker image for trimming and alignment with genome-seek

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 1 year ago - 36 downloads - 1,367 dependencies
chosenobih/pamlinc v0.4

A workflow for Parallel Annotation of Modified RNAs, LincRNAs & Transcript Abundance Quantification.

  • version: 4.2.2.0-local, 4.2.2.0-spark
Latest release: over 1 year ago - 30 downloads - 1,036 dependencies
almadengenomics/gatk 4.4.0.0

  • version: 4.4.0.0-spark, 4.4.0.0-local
Latest release: over 1 year ago - 23 downloads - 551 dependencies
rahulg603/gatk_samtools_docker latest

  • version: 4.2.6.0-spark, 4.2.6.0-local
Latest release: over 1 year ago - 12,163 downloads - 839 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 4.3.0.0-spark, 4.3.0.0-local
Latest release: over 1 year ago - 79 downloads - 1,367 dependencies
arnstrm2/gatk 4.4.0

  • version: 4.4.0.0-local, 4.4.0.0-spark
Latest release: about 1 year ago - 24 downloads - 1,044 dependencies
joshuatobin257/drop latest

  • version: 4.4.0.0-local
Latest release: about 1 year ago - 15 downloads - 840 dependencies
giusmar/rnaseq 0.2

  • version: 4.4.0.0-21-g7415882-SNAPSHOT-spark
Latest release: over 1 year ago - 14 downloads - 1,154 dependencies