Ecosyste.ms: Docker

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Package Usage : deb : ubuntu/tabix

Explore the latest package usage data for ubuntu/tabix in the deb ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 350
Total downloads: 34,323,724

More details on packages.ecosyste.ms - JSON

intelliseqngs/task_vcf-anno-hpo 1.0.5

  • version: 1.10.2-3ubuntu0.1, 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 1,279 downloads - 235 dependencies
intelliseqngs/task_vcf-split-multiallelic-hg38 1.2.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 785 downloads - 333 dependencies
broadinstitute/pcawg_public latest

pcawg_public

  • version: 0.2.6-2
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: over 7 years ago - 780 downloads - 1,368 dependencies
intelliseqngs/task_imputing-ldproxy 0.1.0-chrY-and-the-rest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 734 downloads - 235 dependencies
intelliseqngs/vcf-acmg-var-desc 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 724 downloads - 315 dependencies
intelliseqngs/task_gtc-to-vcf-grch38-no-alt 1.1.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 1,238 downloads - 568 dependencies
intelliseqngs/neat-genreads grch38-no-alt-analysis-set_chromosome-wise_1.0.0-chrY-and-the-rest

  • version: 1.9-10
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-19.10
Latest release: over 4 years ago - 653 downloads - 317 dependencies
zhiliz/autoreporting v1.0.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 20,044 downloads - 251 dependencies
intelliseqngs/pgx-pharmcat 2.1.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 639 downloads - 396 dependencies
intelliseqngs/task_vcf-add-id 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 1,084 downloads - 315 dependencies
intelliseqngs/bwa-mem-hg38-chr-wise 3.1.0-chrY-and-the-rest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 4 years ago - 580 downloads - 233 dependencies
intelliseqngs/task_vcf-select-transc 1.0.1

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 1,026 downloads - 315 dependencies
intelliseqngs/task_vcf-tag-inheritance 1.0.2

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 707 downloads - 333 dependencies
intelliseqngs/annotsv GRCh38_1.0.0

  • version: 1.9-10
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-19.10
Latest release: over 4 years ago - 441 downloads - 392 dependencies
ctomlins/samtools latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 6,584 downloads - 1,109 dependencies
intelliseqngs/task_vcf-anno-snpeff-grch38.107 1.1.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 4,811 downloads - 492 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 403 downloads - 849 dependencies
intelliseqngs/annotsv-grch38 1.0.8

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 394 downloads - 449 dependencies
almahmoud/bioconductor_docker RELEASE_3_17

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 359 downloads - 1,206 dependencies
vanallenlab/sv-pipeline-qc gnomad_v3_qc

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 338 downloads - 1,373 dependencies
intelliseqngs/task_vcf-split-site-only 1.0.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 308 downloads - 333 dependencies
intelliseqngs/bwa-mem-grch38-no-alt-chr-wise 3.1.0-chrY-and-the-rest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 4 years ago - 306 downloads - 233 dependencies
broadinstitute/dsp-spec-ops SvABA-4a0606e-1509564447

DSP SpecOps

  • version: 1.2.1-2ubuntu1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-16.04
Latest release: about 7 years ago - 298 downloads - 248 dependencies
intelliseqngs/gsort 1.0.1

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 319 downloads - 315 dependencies
tercen/runtime-flowsuite 3.15-4

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 353 downloads - 1,641 dependencies
intelliseqngs/task_fq-bowtie2 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 233 downloads - 317 dependencies
chrshrrs/vcat-master sh

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 228 downloads - 693 dependencies
intelliseqngs/task_vcf-filter-align-errors 1.1.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 260 downloads - 566 dependencies
intelliseqngs/prodia_task_phasing-eagle 1.0.1-chrY-and-the-rest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 337 downloads - 333 dependencies
trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

  • version: 1.2.1-2ubuntu1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-16.04
Latest release: about 4 years ago - 212 downloads - 965 dependencies
intelliseqngs/task_vcf-filter-clinical-test 1.0.2

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 223 downloads - 235 dependencies
koki/sctensor-experiments 20220208

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 206 downloads - 2,071 dependencies
koki/biocdev 20230818

  • version: 1.10.2-3, 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 201 downloads - 1,504 dependencies
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

  • version: 0.2.6-2
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: almost 7 years ago - 246 downloads - 865 dependencies
intelliseqngs/prodia_task_imputing-ldproxy 1.0.4-chrY-and-the-rest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 459 downloads - 252 dependencies
intelliseqngs/task_sv-breaks-pos 1.0.2

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 156 downloads - 254 dependencies
intelliseqngs/lumpy 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 150 downloads - 377 dependencies
broadinstitute/pcawg_full 7

  • version: 0.2.6-2
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: about 7 years ago - 146 downloads - 889 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 131 downloads - 1,081 dependencies
intelliseqngs/task_fq-bowtie 1.1.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 134 downloads - 356 dependencies
intelliseqngs/task_sv-anno-panel 1.1.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 4 years ago - 154 downloads - 354 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 1.2.1-2ubuntu1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-16.04
Latest release: over 4 years ago - 131 downloads - 928 dependencies
intelliseqngs/task_sv-annot-filter 1.0.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 151 downloads - 388 dependencies
mkolmogo/card_harmonize_vcf 0.1

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 2,231 downloads - 223 dependencies
huangnengcsu/nanosnp v2.1-gpu

A deep learning SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 2 years ago - 260 downloads - 208 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 111 downloads - 2,087 dependencies
intelliseqngs/duphold-hg38 1.1.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 108 downloads - 273 dependencies
intelliseqngs/task_simulate-neat-grch38-chr-wise 1.0.0-chrY-and-the-rest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 132 downloads - 291 dependencies
koki/reductdims latest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 106 downloads - 1,081 dependencies
intelliseqngs/anno-frequencies-exome_grch38 1.0.0-chrY-and-the-rest

  • version: 1.9-10
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-19.04
Latest release: over 4 years ago - 126 downloads - 334 dependencies
intelliseqngs/svtyper 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 100 downloads - 299 dependencies
intelliseqngs/simple-repeats v0.1

  • version: 1.9-10
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-19.10
Latest release: almost 5 years ago - 100 downloads - 345 dependencies
intelliseqngs/dragmap-grch38-no-alt 1.1.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 158 downloads - 558 dependencies
intelliseqngs/task_simulate-neat-grch38-no-alt-chr-wise 1.0.0-chrY-and-the-rest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 93 downloads - 291 dependencies
intelliseqngs/task_pdf-merge 1.2.1

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 96 downloads - 357 dependencies
broadinstitute/pcawg_tokens latest

  • version: 0.2.6-2
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: about 8 years ago - 90 downloads - 1,472 dependencies
crukmi/mesa main

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 91 downloads - 1,326 dependencies
testalabgh/downstream signac-1.4.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 485 downloads - 3,517 dependencies
intelliseqngs/variant-descriptor 1.0.0

  • version: 1.9-10
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-19.04
Latest release: over 4 years ago - 87 downloads - 334 dependencies
intelliseqngs/task_sv-cov-plot 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 83 downloads - 597 dependencies
intelliseqngs/task_vcf-anno-civic-evidence 1.0.4

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 514 downloads - 333 dependencies
intelliseqngs/snpsift 1.2.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 78 downloads - 41 dependencies
qdidiscoveryservices/quantiseqr v1

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 65 downloads - 1,201 dependencies
tercen/flowsom_operator 1.6.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 105 downloads - 1,563 dependencies
intelliseqngs/task_bam-exon-depth 1.0.4

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 67 downloads - 547 dependencies
intelliseqngs/survivor merge_v0.1

  • version: 1.9-10
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-19.10
Latest release: almost 5 years ago - 61 downloads - 203 dependencies
koki/annotationhub 20210323

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 73 downloads - 1,250 dependencies
intelliseqngs/duphold-grch38-no-alt 1.1.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 89 downloads - 273 dependencies
koki/tensor-project-plasmids 20211014

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 54 downloads - 1,169 dependencies
intelliseqngs/acmg-ba1 latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 5 years ago - 52 downloads - 266 dependencies
intelliseqngs/pgx-phase-beagle 1.1.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 56 downloads - 396 dependencies
intelliseqngs/mkfastq 0.0.2

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 52 downloads - 505 dependencies
genieusgenomics/pbsv 2.8.0

PacBio structural variant (SV) calling and analysis tools

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 48 downloads - 384 dependencies
dhspence/encode-atac 1

encode atac pipeline docker image

  • version: 1.2.1-2ubuntu1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-16.04
Latest release: almost 6 years ago - 55 downloads - 705 dependencies
koki/trybioworkshop sha-07d5fb0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 49 downloads - 1,175 dependencies
intelliseqngs/reporting-csv-generator v0.1

  • version: 1.9-10
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-19.10
Latest release: over 4 years ago - 49 downloads - 288 dependencies
koki/tensor-projects-vaccine 20221128

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 56 downloads - 1,283 dependencies
amcalejandro/longgwas v2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 593 downloads - 690 dependencies
tipsarin/demuxlet latest

test

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 47 downloads - 244 dependencies
mkolmogo/hapdiff 0.8

  • version: 1.13 ds-2build1, 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 1,465 downloads - 250 dependencies
koki/delayedtensor-experiments 20230818

  • version: 1.13 ds-2build1, 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 57 downloads - 1,295 dependencies
nbutter/gatk_tools latest

GATK and other bioinformatics tools packaged together.

  • version: 1.2.1-2ubuntu1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-16.04
Latest release: over 5 years ago - 44 downloads - 869 dependencies
qdidiscoveryservices/rocker_seurat_seurat_disk latest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 44 downloads - 1,907 dependencies
tercen/debarcoding_cytof_operator 0.3.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 109 downloads - 1,659 dependencies
koki/tensor-projects-machima 20220827

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 49 downloads - 1,441 dependencies
intelliseqngs/clinvar-annotation 2.5.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 47 downloads - 356 dependencies