Ecosyste.ms: Docker

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Package Usage : deb : ubuntu/libhtscodecs2

Explore the latest package usage data for ubuntu/libhtscodecs2 in the deb ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 169
Total downloads: 33,628,889

More details on packages.ecosyste.ms - JSON

intelliseqngs/prodia_mosdepth 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 18 downloads - 333 dependencies
intelliseqngs/prodia_task_vcf-change-samplename 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 104 downloads - 333 dependencies
bioconductor/ismb.osca 124cbc0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 299 downloads - 1,422 dependencies
intelliseqngs/prodia_task_vcf-beagle-merge 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 13 downloads - 333 dependencies
intelliseqngs/iseq-bcftools-1.16 1.0.2

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 30 downloads - 333 dependencies
bioconductor/r-ver RELEASE_3_17-R-4.3.2

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 12 months ago - 922 downloads - 1,181 dependencies
koki/guidedpls sha-a0875b7

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 17 downloads - 170 dependencies
intelliseqngs/prodia_task_vcf-to-sites-tsv 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 16 downloads - 333 dependencies
almahmoud/anvilrstudiotest devel-3.17

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 10 downloads - 1,579 dependencies
mjinkm/mtrfind latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 13 downloads - 255 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 60 downloads - 529 dependencies
koki/landscaper pr-19

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 288 downloads - 1,337 dependencies
shashankti/bioc_docker v1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 7 downloads - 1,350 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 15 downloads - 1,562 dependencies
srynobio/diagnostic_rnaseq latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 108 downloads - 1,441 dependencies
jenfisher7/rstudio_sbae latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 8 downloads - 1,604 dependencies
fabianegli/scp-recommendations-2022 1.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 12 downloads - 1,328 dependencies
ntobias85/abe_repo degust_build

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 6 downloads - 1,339 dependencies
jmonlong/terra-rstudio-custom 0.0.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 7 downloads - 1,616 dependencies
intelliseqngs/prodia_task_imputing-ldproxy-without-ref-data 1.0.4

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 5 downloads - 252 dependencies
sgiorgetti/api-build release-109-56

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 8 downloads - 399 dependencies
medicinalgenomics/star latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 9 downloads - 168 dependencies
intelliseqngs/task_sv-filter 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 36 downloads - 333 dependencies
bioxfu/ddngs latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 10 downloads - 1,055 dependencies
streptomyces/reciblast latest

Reciprocal blastp for Ainsley

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 10 downloads - 754 dependencies
wlc27/dcanr v1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 10 downloads - 1,681 dependencies
amcooksey/nal_rna_seq_annotation_pipeline testing

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 10 downloads - 865 dependencies
hugtools/primer4hugbuild 0.4.2

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 12 downloads - 470 dependencies
intelliseqngs/task_pgx-phase-beagle 1.1.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 172 downloads - 450 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 9 downloads - 1,604 dependencies
nilesh0404/st_visualizer m1_0.1.2

  • version: 1.1.1-3
  • arch: arm64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 18 downloads - 1,422 dependencies
intelliseqngs/iseq-htslib-1.16 1.0.2

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 11 downloads - 333 dependencies
codechenx/nafld_500_data latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 10 downloads - 1,346 dependencies
louisk92/spapros_scpnmf v1.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 10 downloads - 1,422 dependencies
intelliseqngs/cnvkit 1.1.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 242 downloads - 556 dependencies
koki/guidedpls-experiments 20230502

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 10 downloads - 1,263 dependencies
loukaszagkoslcpuk/lcphaomicsplink latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 350 downloads - 691 dependencies
bbeacosta/sctype latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 9 downloads - 1,391 dependencies
jysgro/tidytranstriptomics_arm64 latest

Based on https://github.com/stemangiola/bioc2021_tidytranscriptomics/

  • version: 1.1.1-3
  • arch: arm64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 8 downloads - 1,266 dependencies
mattiaficarellilcpuk/lcphaomicsbioinfotools latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 9 downloads - 727 dependencies
qtulab/miniencode latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 56 downloads - 4,269 dependencies
cbgr/cager261 1.4

Container for the CAGEr tool version 2.6.1.

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 9 months ago - 22 downloads - 1,356 dependencies
mmastert4/metamdbg 7ce646a

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 8 downloads - 258 dependencies
bianca7/clusterprofiler latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 11 downloads - 1,315 dependencies
skchronicles/flair v0.1.0

Docker image for FLAIR: Full-Length Alternative Isoform analysis of RNA

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 9 downloads - 729 dependencies
intelliseqngs/task_vcf-filter-freq 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 4,331 downloads - 333 dependencies
intelliseqngs/task_vcf-filter-snpeff 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 4,324 downloads - 333 dependencies
hailgenetics/vep-grch37-85 0.2.127

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 11 months ago - 1,780 downloads - 367 dependencies
babessell/strling-unofficial main

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 7,235 downloads - 266 dependencies
mparikhbroad/mast_workflow 1.0.2

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 461 downloads - 1,607 dependencies
cgrlab/glnexus cvss

  • version: 1.3.0-4
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-23.04
Latest release: over 1 year ago - 617 downloads - 126 dependencies
eppicenter/mad4hatter latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 191 downloads - 739 dependencies
salvacasani/bwa latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 123 downloads - 235 dependencies
intelliseqngs/task_vcf-select-var 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 180 downloads - 388 dependencies
harrisonjg/freyja v.1.4.7

  • version: 1.2.2-1
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.10
Latest release: about 1 year ago - 125 downloads - 501 dependencies
intelliseqngs/task_vcf-anno-manual-filtering 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 188 downloads - 388 dependencies
intelliseqngs/task_vcf-anno-fda 1.0.6

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 12 months ago - 401 downloads - 388 dependencies
intelliseqngs/task_vcf-filter-qual 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 145 downloads - 388 dependencies
mesti90/ecoli_hgt_all_in 1.1

  • version: 1.3.0-4
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-23.04
Latest release: about 1 year ago - 88 downloads - 1,148 dependencies
intelliseqngs/task_cfdna-tsv-to-excel 1.3.5

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 12 months ago - 278 downloads - 655 dependencies
biodufpa/pp2oa advanced

  • version: 1.2.2-1
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.10
Latest release: over 1 year ago - 29 downloads - 1,124 dependencies
bianca7/deseq2 latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 27 downloads - 1,263 dependencies
skchronicles/genome-seek_trim_map latest

Official docker image for trimming and alignment with genome-seek

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 36 downloads - 1,367 dependencies
weishwu/snikt 0.5.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 23 downloads - 1,253 dependencies
intelliseqngs/task_bam-filter-chimeric 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 24 downloads - 333 dependencies
rosadesa/freec 0.5

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 28 downloads - 662 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 23 downloads - 1,568 dependencies
yunagaoka/ubuntu22.04 0.1.2

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 26 downloads - 1,139 dependencies
ycli1995/bioinfo_dev 1.0.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 11 months ago - 48 downloads - 4,337 dependencies
arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 24 downloads - 1,444 dependencies
mqmnd/bwa_samtools amd

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 20 downloads - 127 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 79 downloads - 1,367 dependencies
mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 25 downloads - 1,332 dependencies
bianca7/mompreprocess latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 53 downloads - 1,340 dependencies
pderouault/bamkin 1.0.3

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 21 downloads - 1,225 dependencies
cgrlab/centos7_bfx 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 20 downloads - 1,457 dependencies
koki/ott 20231012

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 23 downloads - 1,228 dependencies
mferrosantos/epidish 0.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 15 downloads - 1,216 dependencies
almahmoud/shiny-iseehub anvil

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 15 downloads - 1,591 dependencies
fionahak/align_s3p v0.0.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 15 downloads - 120 dependencies
neurogenomicslab/scavenge main

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 15 downloads - 1,305 dependencies
skchronicles/genome-seek_hla v0.1.0

Official docker image for HLA typing steps in genome-seek

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 14 downloads - 1,722 dependencies
natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 14 downloads - 1,392 dependencies
esollier/hmf latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 14 downloads - 1,275 dependencies
bigdatainbiomedicine/inspect-r latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 13 downloads - 643 dependencies
gm088/svm 030723

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 13 downloads - 1,497 dependencies
louisk92/spapros_genebasis v1.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 13 downloads - 1,419 dependencies
streptomyces/stage004 latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 13 downloads - 862 dependencies
medicinalgenomics/bowtie2 latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 13 downloads - 221 dependencies
rtibiocloud/neurogenomicslab_mungesumstats v1.7.10_6e16c82

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 13 downloads - 1,293 dependencies
intelliseqngs/task_vcf-filter-genes 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 13 downloads - 333 dependencies