broadinstitute/genomes-in-the-cloud 2.4.0-1501007820

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

veupathdb/rserve 7

ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c

dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

broadinstitute/terra-jupyter-aou 8bf6b13

ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

rocker/ropensci latest

ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30

nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

nfcore/chipseq dev

A docker image for nf-core/chipseq

180a51c0/gh-action-buildapp latest

nfcore/mag dev

tabbzi/terra-dogagingproject-genomic-reports latest

Low-pass sequencing data processing for the Dog Aging Project

broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

mirekphd/ml-cpu-r36-rs-cust latest

ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c

ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-18

vanallenlab/sv-pipeline filter_gt_029fa3b

nfcore/ampliseq dev

A Docker image for nf-core/ampliseq.

biocontainers/assemblytics v1.0ds-1-deb_cv1

rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

biocontainers/qcumber v1.0.14dfsg-1-deb_cv1

biocontainers/ea-utils v1.1.2dfsg-5-deb_cv1

biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

biocontainers/nanook v1.33dfsg-1-deb_cv1

biocontainers/paleomix v1.2.13.3-1-deb_cv1

biocontainers/roary v3.12.0dfsg-2-deb_cv1

artemklevtsov/r-alpine pkgdev

R docker images based on the alpine:latest

mirekphd/ml-cpu-r36-base latest

gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

hylleraas/singleuser 27

mesosphere/mesosphere-data-toolkit latest

rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c

qdidiscoveryservices/ms_pipeline latest

ocdr/dkube-datascience-rs-sk-cpu-multiuser v1.1.1-tiji-test

ocdr/dkube-datascience-rs-tf-cpu v2.0.0-tiji-test

ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c

ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.9-18

patroonorg/patroondeps latest

ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-18

rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

gesiscss/binder-serhatcevikel-2dbdm-5f2019-e7b363 1239175be24a02ff0e1bcd30f865011dc1fca7d4

bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

snoopycrimecop/training-notebooks master_merge_daily

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO

broadinstitute/terra-jupyter-gatk 8444561

mesosphere/mesosphere-jupyter-service latest

nfcore/bcellmagic dev

A preliminary container for the bcellmagic pipeline

alligatorcompany/acs-exasol 8.23.0.1

exasol docker image with additional checks

araalinetworks/devproxy master--jenkins--2023-08-11-07-57-01

dragonflyscience/niwaverse 2020-08-11

ccdlstaging/dr_compendia 549216c6fa7f6c80a5d78287c8814330f150428c

rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

dceoy/r-tidyverse latest

R with tidyverse

dragonflyscience/dragonverse-18.04 latest

afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

nfcore/neutronstar latest

A Docker Container for nf-core/neutronstar

kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

kbase/metrics latest

ocdr/dkube-datascience-rs-tf-gpu v2.0.0-tiji-test

nfcore/airrflowreport dev

dragonflyscience/sharknado 2023-07-23

recetox/retip 0.5.4-recetox4

Retention Time prediction for metabolomics

biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

kbase/errorlogging develop

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

afcai2c/python-r-ai latest

Image with Python and R packages

gesiscss/binder-lmartinoty-2dlmartinoty-e3b0bd c626ad4bba1c566a8af5d745f4386d02e9fe9b44

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

nfcore/slamseq dev

A docker image for nf-core/slamseq

prismcmap/reports 94804f34cf31

intelliseqngs/gatk-4.1.7.0 1.0.4

nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

intelliseqngs/task_bam-metrics 1.2.8

nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.

nfcore/proteomicslfq dev

A Docker Container for label free quantification for proteomics data.

nfcore/diaproteomics dev

A Docker container for nf-core/diaproteomics

intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

intelliseqngs/gatk-4.1.6.0 2.0.2

intelliseqngs/task_vcf-uniq 1.0.0

mirekphd/ml-cpu-r35-rs 20190201

lucifer001/custom-rs-tf-multiuser gpu