Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : optparse

Explore the latest package usage data for optparse in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 369
Total downloads: 35,024,330

More details on packages.ecosyste.ms - JSON

intelliseqngs/collect-hs-metrics 1.0.0

  • version: 1.3.2
Latest release: over 4 years ago - 131 downloads - 928 dependencies
intelliseqngs/gatk-4.2.4.1 1.0.1

  • version: 1.6.4
Latest release: almost 2 years ago - 161 downloads - 1,118 dependencies
dmiller15/sequenza 3.0.0

  • version: 1.7.1
Latest release: almost 2 years ago - 118 downloads - 448 dependencies
peterdjames/r_base_with_packs_incl_rkdb r-base

  • version: 1.6.6
Latest release: almost 2 years ago - 614 downloads - 1,721 dependencies
broadinstitute/pcawg_tokens latest

  • version: 1.3.2
Latest release: about 8 years ago - 90 downloads - 1,472 dependencies
mirekphd/ml-cpu-r35-rdp 20180918

  • version: 1.6.0
Latest release: about 6 years ago - 93 downloads - 9,486 dependencies
evolbioinfo/pathphynder b8532c

https://github.com/ruidlpm/pathPhynder

  • version: 1.6.6
Latest release: over 3 years ago - 87 downloads - 358 dependencies
intelliseqngs/resources-pgx-polygenic 1.2.4

  • version: 1.6.4
Latest release: about 1 year ago - 300 downloads - 1,059 dependencies
hoonbiolab/cnvkit v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 83 downloads - 817 dependencies
gene110/reportnipt550 latest

  • version: 1.6.4
Latest release: over 3 years ago - 88 downloads - 577 dependencies
intelliseqngs/task_bam-metrics-hg38 1.0.2

  • version: 1.6.4
Latest release: almost 2 years ago - 79 downloads - 1,144 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 1.7.3
Latest release: almost 2 years ago - 80 downloads - 494 dependencies
luisas/gatk latest

  • version: 1.3.2
Latest release: over 6 years ago - 75 downloads - 374 dependencies
ocdr/inf-multimodel latest

  • version: 1.6.6
Latest release: over 3 years ago - 81 downloads - 464 dependencies
hoonbiolab/cnvpytor v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 52 downloads - 807 dependencies
luisas/gatk-haplotypecaller latest

  • version: 1.3.2
Latest release: over 6 years ago - 48 downloads - 734 dependencies
amcalejandro/longgwas v2

  • version: 1.7.3
Latest release: over 1 year ago - 593 downloads - 690 dependencies
evolbioinfo/finestructure v4.1.1

FineSTRUCTURE is software to perform population assignment

  • version: 1.7.1
Latest release: about 3 years ago - 46 downloads - 354 dependencies
nbutter/gatk_tools latest

GATK and other bioinformatics tools packaged together.

  • version: 1.3.2
Latest release: over 5 years ago - 44 downloads - 869 dependencies
khoulaha/jabba v1.0.0

  • version: 1.7.3
Latest release: almost 2 years ago - 42 downloads - 2,527 dependencies
koki/tensor-projects-machima 20220827

  • version: 1.7.3
Latest release: over 2 years ago - 49 downloads - 1,441 dependencies
mbwali/jupyterlab qiime2023

  • version: 1.7.3
Latest release: over 1 year ago - 56 downloads - 1,941 dependencies
broadcptacdev/panoply_so_nmf_report 9bb503e

  • version: 1.6.6
Latest release: over 1 year ago - 95 downloads - 725 dependencies
hoonbiolab/kallisto v1.2

  • version: 1.6.6
Latest release: over 2 years ago - 43 downloads - 817 dependencies
hoonbiolab/mutect2 v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 42 downloads - 811 dependencies
hoonbiolab/gatk4 v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 44 downloads - 907 dependencies
hoonbiolab/amplicon_architect v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 39 downloads - 804 dependencies
dmiller15/gatk 4.1.7.0R0.1

  • version: 1.6.6
Latest release: over 4 years ago - 41 downloads - 866 dependencies
hoonbiolab/glass v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 37 downloads - 811 dependencies
hoonbiolab/fastqc v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 39 downloads - 799 dependencies
dmiller15/minfi 4.2.0

  • version: 1.7.1
Latest release: over 2 years ago - 35 downloads - 1,415 dependencies
hoonbiolab/svclone v1.1.1

  • version: 1.7.3
Latest release: about 2 years ago - 34 downloads - 420 dependencies
mirekphd/ml-cpu-r36-rs 20200131

  • version: 1.4.4
Latest release: almost 5 years ago - 34 downloads - 10,669 dependencies
hoonbiolab/multiqc v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 33 downloads - 819 dependencies
ctomlins/score latest

  • version: 1.6.4
Latest release: almost 2 years ago - 33 downloads - 799 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 36 downloads - 828 dependencies
hoonbiolab/delly v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 31 downloads - 800 dependencies
hoonbiolab/vcf-kit v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 29 downloads - 840 dependencies
hoonbiolab/gatk4_scnv v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 29 downloads - 811 dependencies
hoonbiolab/ascat v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 32 downloads - 792 dependencies
ztamayo/nbridge-os latest

  • version: 1.6.1
Latest release: over 5 years ago - 28 downloads - 827 dependencies
intelliseqngs/pharmcat-resources 1.1.0

  • version: 1.6.4
Latest release: almost 3 years ago - 31 downloads - 964 dependencies
hoonbiolab/mixcr v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 30 downloads - 710 dependencies
hoonbiolab/lohhla v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 30 downloads - 708 dependencies
hoonbiolab/imagemagick v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 29 downloads - 681 dependencies
hoonbiolab/pvacseq v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 29 downloads - 682 dependencies
hoonbiolab/svaba r4

  • version: 1.7.3
Latest release: about 2 years ago - 28 downloads - 742 dependencies
skoyamamd/grab latest

  • version: 1.6.6
Latest release: about 2 years ago - 26 downloads - 625 dependencies
hoonbiolab/ensembl_vep v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 28 downloads - 682 dependencies
ocdr/r-server rcitox

  • version: 1.6.6
Latest release: about 4 years ago - 26 downloads - 507 dependencies
hoonbiolab/optitype v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 28 downloads - 776 dependencies
hoonbiolab/titan v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 29 downloads - 754 dependencies
hoonbiolab/funcotate v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 28 downloads - 777 dependencies
hoonbiolab/test2 v1.0

  • version: 1.6.6
Latest release: over 3 years ago - 24 downloads - 759 dependencies
porchard/decontx 20230104

  • version: 1.7.3
Latest release: almost 2 years ago - 28 downloads - 830 dependencies
hoonbiolab/star v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 28 downloads - 782 dependencies
hoonbiolab/prada v1.2

  • version: 1.6.6
Latest release: almost 3 years ago - 28 downloads - 699 dependencies
peterdjames/r_base_with_packs_inlc_rkdb latest

  • version: 1.6.6
Latest release: almost 2 years ago - 83 downloads - 1,630 dependencies
drazend/r-sample 0.01

  • version: 1.6.6
Latest release: over 4 years ago - 24 downloads - 359 dependencies
hoonbiolab/revertsam v1.1

  • version: 1.6.6, 1.6.2
Latest release: about 3 years ago - 26 downloads - 884 dependencies
hoonbiolab/vep v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 26 downloads - 682 dependencies
intelliseqngs/task_gvcf-genotype-by-vcf 0.0.3

  • version: 1.3.2
Latest release: over 4 years ago - 23 downloads - 844 dependencies
intelliseqngs/task_vcf-varcall-metrics-grch38-no-alt 1.1.2

  • version: 1.6.4
Latest release: almost 2 years ago - 26 downloads - 1,038 dependencies
hoonbiolab/test v1.0

  • version: 1.6.6
Latest release: over 3 years ago - 23 downloads - 779 dependencies
hoonbiolab/sequenza v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 25 downloads - 801 dependencies
hoonbiolab/freebayes v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 24 downloads - 682 dependencies
intelliseqngs/prodia_gatk-4.2.0.0 1.0.1

  • version: 1.6.4
Latest release: almost 2 years ago - 25 downloads - 1,014 dependencies
hoonbiolab/bcftools v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 23 downloads - 681 dependencies
koki/bindsc 20220609

  • version: 1.7.1
Latest release: over 2 years ago - 22 downloads - 2,060 dependencies
markshill/clustering_tree_building-env latest

  • version: 1.7.1
Latest release: almost 2 years ago - 20 downloads - 1,416 dependencies
hoonbiolab/fastq v1.0

  • version: 1.6.6
Latest release: over 3 years ago - 19 downloads - 822 dependencies
intelliseqngs/prodia_task_vcf-qc 1.0.7

  • version: 1.7.3
Latest release: almost 2 years ago - 30 downloads - 692 dependencies
hoonbiolab/telomeasure v1.1

  • version: 1.6.6
Latest release: almost 3 years ago - 22 downloads - 814 dependencies
mrkevindc/varscan latest

  • version: 1.6.4
Latest release: almost 2 years ago - 66 downloads - 924 dependencies
mrkevindc/mutect2 latest

  • version: 1.6.4
Latest release: almost 2 years ago - 36 downloads - 912 dependencies
hoonbiolab/svtools v0.4.0

  • version: 1.6.6
Latest release: 11 months ago - 23 downloads - 681 dependencies
h836472/cs_mainimage test

  • version: 1.7.3
Latest release: almost 2 years ago - 14 downloads - 769 dependencies
ocdr/r_server.mak latest

  • version: 1.6.6
Latest release: about 4 years ago - 15 downloads - 507 dependencies
hoonbiolab/annovar v1.0

  • version: 1.6.6
Latest release: almost 3 years ago - 18 downloads - 810 dependencies
hoonbiolab/testbase v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 15 downloads - 617 dependencies
hoonbiolab/fastp v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 16 downloads - 792 dependencies
intelliseqngs/gatk_4.1.6.0 1.1.0

  • version: 1.3.2
Latest release: over 4 years ago - 13 downloads - 842 dependencies
byjin/sqtl 2.0

r docker for sqtl-seeker2( try )

  • version: 1.7.3
Latest release: almost 2 years ago - 27 downloads - 557 dependencies
hoonbiolab/chromothripsis v1.0

  • version: 1.7.1
Latest release: almost 3 years ago - 14 downloads - 505 dependencies
biocontainers/batman phenomenal-v1.2.12.0_cv1.1.72

Bayesian Automated Metabolite Analyser for NMR spectra (BATMAN).

  • version: 1.4.4
Latest release: almost 7 years ago - 1,000 downloads - 264 dependencies
ilariap/taxonomizr_p latest

Tazonomizr + optparse + stringr

  • version: 1.7.3
Latest release: almost 2 years ago - 197 downloads - 636 dependencies
hoonbiolab/ccle-cga v0.2

  • version: 1.6.2
Latest release: almost 2 years ago - 72 downloads - 586 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 1.7.3
Latest release: over 1 year ago - 60 downloads - 571 dependencies
broadcptacdev/activedriver latest

  • version: 1.6.6
Latest release: over 1 year ago - 27 downloads - 720 dependencies
albertea/numbat_light 02

  • version: 1.7.3
Latest release: over 1 year ago - 42 downloads - 301 dependencies
hongminc1/tskit_test latest

  • version: 1.7.3
Latest release: almost 2 years ago - 20 downloads - 897 dependencies
crpeters/r-methylkit 4.2.1

  • version: 1.7.3
Latest release: almost 2 years ago - 12 downloads - 383 dependencies
intelliseqngs/prodia_task_vcf-concat-beagle 1.0.0

  • version: 1.6.4
Latest release: about 2 years ago - 14 downloads - 1,019 dependencies
gene110/nipt_combinereport_wcx v0

  • version: 1.6.6
Latest release: almost 2 years ago - 25 downloads - 674 dependencies
alexthiery/archr 3.1

  • version: 1.7.1, 1.7.3
Latest release: over 1 year ago - 133 downloads - 819 dependencies
njjtemp/scrattch-mapping 2.9

  • version: 1.7.1, 1.7.3
Latest release: over 1 year ago - 315 downloads - 850 dependencies
intelliseqngs/gatk-4.1.9.0-hg38 1.0.0

  • version: 1.6.4
Latest release: over 3 years ago - 11 downloads - 677 dependencies