rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

broadinstitute/fungal_gatk4 latest

tercen/dartrusttidy travis-17

gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

gesiscss/binder-palmoreck-2ddockerfiles-2dfor-2dbinder-f98a72 e6751152f3669d7fa6b0892ed229918a75b153df

dceoy/r-tidyverse latest

R with tidyverse

dragonflyscience/dragonverse-18.04 latest

afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

nfcore/neutronstar latest

A Docker Container for nf-core/neutronstar

kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

kbase/metrics latest

ocdr/dkube-datascience-rs-tf-gpu v2.0.0-tiji-test

nfcore/airrflowreport dev

dragonflyscience/sharknado 2023-07-23

recetox/retip 0.5.4-recetox4

Retention Time prediction for metabolomics

biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

kbase/errorlogging develop

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

afcai2c/python-r-ai latest

Image with Python and R packages

gesiscss/binder-lmartinoty-2dlmartinoty-e3b0bd c626ad4bba1c566a8af5d745f4386d02e9fe9b44

tercen/runtime-r40 4.0.4-6

nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

intelliseqngs/task_bam-bsqr 1.2.2

nfcore/slamseq dev

A docker image for nf-core/slamseq

intelliseqngs/task_bam-filter-mismatch 1.4.1

prismcmap/reports 94804f34cf31

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

intelliseqngs/gatk-4.1.7.0 1.0.4

nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

intelliseqngs/task_bam-metrics 1.2.8

ebsproject/ba-worker 23.06.30.184-DEV

nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.

biocontainers/oncocnv v7.0_cv2

intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

databrewllc/anomaly-detection acf56fc

This repository is used for forms anomaly detection

nfcore/proteomicslfq dev

A Docker Container for label free quantification for proteomics data.

nfcore/diaproteomics dev

A Docker container for nf-core/diaproteomics

intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

intelliseqngs/gatk-4.1.6.0 2.0.2

intelliseqngs/task_mt-varcall-mutect2 1.1.2

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

intelliseqngs/gatk-4.2.0.0 1.0.0

intelliseqngs/task_vcf-concat 1.0.4

intelliseqngs/task_vcf-anno-cosmic 2.0.0

intelliseqngs/task_vcf-uniq 1.0.0

intelliseqngs/task_mt-realign 1.1.2

intelliseqngs/task_bam-gatk-m2 1.1.2

intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

prismcmap/landing v0.2.2

intelliseqngs/task_vcf-qc 1.4.0

hoonbiolab/cellranger v1.0

intelliseqngs/task_vcf-prepare 1.0.3

dg520/rsimple 1.1

mirekphd/ml-cpu-r35-rs 20190201

lucifer001/custom-rs-tf-multiuser gpu

ocdr/ds-apps test2

alexwaldrop/metaxcan 75065864afcec43181f17ef00c8518a2d29fe8a7

Metaxcan v.0.6.6 integrative gene mapping software

veitveit/isolabeledprotocol latest

Discontinued, see github.com/ProtProtocols/IsoProt for updates

prismcmap/depmap_versions dd55695d58fb

dhspence/docker-homer latest

docker with chip-seq tool homer

nfcore/exoseq dev

A docker container for the ExoSeq pipeline

tercen/runtime-r35 3.5.3-7

davidspek/kubeflow-datascience-notebook kale-dev-0.0.1

This image contains the regular jupyter/datascience-notebook edited for it to work in kubeflow.

nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

gesiscss/singleuser-orc r2d-49e91d9

intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

ctomlins/mblast latest

gesiscss/binder-matjesg-2dais-5f2019-df9f9f c588d97bc20b1345ea549a5260d2ec36137e911b

seglh/exomedepth f4716ad

intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

beakernotebook/beaker-base latest

Base image for building beaker docker image

afcai2c/r-studio rebuild

Basic installation of R Studio.

gene110/nipt_report latest

dragonflyscience/shellington 2021-09-14

gesiscss/binder-numeconcopenhagen-2dlectures-2d2020-a504cd 3037261943dce17c68a5d932223d3724580e1671

nextgenusfs/funannotate-slim v1.8.15

Base funannotate image (no databases)

ashish1981/z-reference-implementation latest

dragonflyscience/wfm-reports-20.04 2022-10-14

nfcore/ddamsproteomics dev

A Docker image for the nf-core/ddamsproteomics pipeline.

kbase/kbase_base latest

KBase Base Image containing Core services and runtime

afcai2c/r-shiny pc22

R Shiniy - Build interactive web applications that can execute R code

tercen/tercen_studio 4.0.4-1

kbase/sdkbase latest

gesiscss/binder-arnim-2dstmdemo-166b8a 3c29f7eaee928ba308137abb0effe5998f8ffa52

rapporteket/base-r 4.2.2

rocker/gdal latest

Build gdal separately to avoid timeouts

gesiscss/binder-pablobernabeu-2dmodality-2dswitch-2deffects-2demerge-2dearly-2dand-2dincrease-2dthroughout-2dconceptual-2dprocessing-e2667d 3173ddce2b5cc44e37c810c654f4cc84c147c45b

anzaika/selectoscope_base latest

Base image with all pipeline parts for selectoscope.

prismcmap/drc-module robust_DRC

ferlabcrsj/all-spark-notebook 3.2.0

Spark notebook images

databrewllc/data-anonymization production

veitveit/vsclust release-1.2.1

For more details, see https://bitbucket.org/veitveit/vsclust

dhspence/docker-sicer latest