broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

nfcore/rnaseq dev

Docker Image for nf-core/rnaseq project.

broadinstitute/viral-core latest

rocker/ropensci latest

broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

nfcore/smrnaseq dev

A Docker container for the nf-core/smrnaseq pipeline.

broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

mirekphd/ml-cpu-r40-rs-cust 20230912

mirekphd/ml-cpu-r36-rs-cust latest

biocontainers/murasaki v1.68.6-8b1-deb_cv1

biocontainers/murasaki-mpi v1.68.6-8b1-deb_cv1

biocontainers/murasaki-common v1.68.6-8-deb_cv1

mirekphd/ml-cpu-r36-base latest

broadinstitute/viral-assemble latest

broadinstitute/viral-phylo 2.0.21.5

kbase/kbase sdkbase.latest

nfcore/bcellmagic dev

A preliminary container for the bcellmagic pipeline

kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

kbase/metrics latest

kbase/errorlogging develop

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

intelliseqngs/task_bam-bsqr 1.2.2

intelliseqngs/task_bam-filter-mismatch 1.4.1

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

intelliseqngs/gatk-4.1.7.0 1.0.4

intelliseqngs/task_bam-metrics 1.2.8

intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

nfcore/diaproteomics dev

A Docker container for nf-core/diaproteomics

intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

intelliseqngs/gatk-4.1.6.0 2.0.2

intelliseqngs/task_mt-varcall-mutect2 1.1.2

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

intelliseqngs/gatk-4.2.0.0 1.0.0

intelliseqngs/task_vcf-concat 1.0.4

intelliseqngs/task_vcf-anno-cosmic 2.0.0

intelliseqngs/task_mt-realign 1.1.2

intelliseqngs/task_bam-gatk-m2 1.1.2

intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

intelliseqngs/task_vcf-prepare 1.0.3

mirekphd/ml-cpu-r35-rs 20190201

prismcmap/depmap_versions dd55695d58fb

nfcore/exoseq dev

A docker container for the ExoSeq pipeline

nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

kbase/kbase_base latest

KBase Base Image containing Core services and runtime

kbase/sdkbase latest

prismcmap/drc-module robust_DRC

dhspence/docker-sicer latest

recetox/aplcms latest

prismcmap/norm-module 26be7aa8ab48

intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

cristaniguti/onemap_git 2.8.0

R package to build linkage map for outcrossing, F2, backcross and RILs populations

kraigerl95/jupyternotebook-r stable

Jupyter Notebook wiht personal changes

intelliseqngs/task_vcf-concat-beagle 1.1.3

intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

intelliseqngs/resources longranger_v0.1

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

dhspence/docker-basestation latest

intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

qdidiscoveryservices/py3_cellranger 6.1.2

nuest/rockerverse-paper latest

mirekphd/ml-cpu-r35-jnb devel_2b2752c

intelliseqngs/task_pileup-merge 1.0.2

trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

gesiscss/binder-benmarwick-2drrtools-9a1629 3f830bce55e733f17e599a632a4e930ee82b8edb

recetox/ramclustr 1.1.0-recetox0

intelliseqngs/astrolabe 1.0.0

prismcmap/sushi develop

gesiscss/binder-wlandau-2ddrake-2dexamples-d960ed 73134a125630b10d47c10b5c038ba7d3af6fec16

intelliseqngs/bcl-to-fq 1.0.2

intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

biocontainers/bioconductor-ebseq v1.14.0-1-deb_cv1

nuest/reproducible-research-at-giscience latest

biocontainers/bioconductor-metagenomeseq v1.16.0-2-deb_cv1

chgyi/metaware_rna_denovo latest

mirekphd/ml-cpu-r35-nx devel_fdbf539

intelliseqngs/collect-hs-metrics 1.0.0

intelliseqngs/gatk-4.2.4.1 1.0.1

dhspence/docker-manta 1.5.0

dragonflyscience/antips-tracks 2022-12-19

inseefrlab/onyxia-r ds-r4.1.2-gpu-2022.09.08

A R environment with a collection of standard data science packages.

kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

vnmd/afni_20.1.18 latest

mirekphd/ml-cpu-r35-rdp 20180918

intelliseqngs/resources-pgx-polygenic 1.2.4

intelliseqngs/task_bam-metrics-hg38 1.0.2

iandennismiller/analyzer latest

Contains Python, Gephi, and RStudio Desktop. Based on /r/iandennismiller/vnc-desktop

gesiscss/binder-darribas-2dgds-5fucm19-a1b96e 27cbafcf6a865910a18b835a4efc47e9fd532696

gesiscss/binder-wlandau-2dlearndrake-4eaf31 37504de3434ab3b0fedf8680a95efeeb605bef4d

gesiscss/binder-tlbbd-2dspring2018-2dlab-5f10-b89db5 85cb00a8af28ec9af53e79e947b0f4ff648544a6