Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
Package Usage : cran : edgeR
Explore the latest package usage data for edgeR in the cran ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 268
Total downloads: 1,749,654
More details on packages.ecosyste.ms - JSON
nfcore/rnaseq dev
Docker Image for nf-core/rnaseq project.
- version: 3.30.0
veupathdb/rserve 7
- version: 3.40.2
broadinstitute/terra-jupyter-aou 8bf6b13
- version: 3.40.0
nfcore/smrnaseq dev
A Docker container for the nf-core/smrnaseq pipeline.
- version: 3.26.5
mirekphd/ml-cpu-r40-rs-cust 20230912
- version: 3.42.4
dhspence/docker-genomic-analysis 122121
From Chris Miller's example
- version: 3.28.1
mirekphd/ml-cpu-r36-rs-cust latest
- version: 3.38.1
mirekphd/ml-cpu-r36-base latest
- version: 3.38.1
kbase/kbase sdkbase.latest
- version: 3.4.2
nfcore/nanoseq dev
Nanopore demultiplexing, QC and alignment pipeline
- version: 3.32.0
mirekphd/ml-cpu-r35-rs 20190201
- version: 3.24.3
prismcmap/depmap_versions dd55695d58fb
- version: 3.32.1
dhspence/docker-homer latest
docker with chip-seq tool homer
- version: 3.22.5
nfcore/exoseq dev
A docker container for the ExoSeq pipeline
- version: 3.22.5
nfcore/lncpipe dev
A Docker image for nf-core/lncpipe
- version: 3.22.5
kbase/kbase_base latest
KBase Base Image containing Core services and runtime
- version: 3.4.2
kbase/sdkbase latest
- version: 3.4.2
prismcmap/drc-module robust_DRC
- version: 3.32.1
dhspence/docker-sicer latest
- version: 3.22.3
qdidiscoveryservices/limma-voom 4.2.0
- version: 3.38.0
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2
- version: 3.36.0
prismcmap/norm-module 26be7aa8ab48
- version: 3.32.1
dhspence/docker-basestation latest
- version: 3.22.3
qdidiscoveryservices/py3_cellranger 6.1.2
- version: 3.30.0
mirekphd/ml-cpu-r35-jnb devel_2b2752c
- version: 3.22.2
koki/pagoda latest
- version: 3.18.1
tercen/runtime-flowsuite 3.15-4
- version: 3.38.4
qdidiscoveryservices/scrna_downstream 1.1
- version: 3.34.1
qdidiscoveryservices/bam_to_10x_counts latest
- version: 3.36.0
chgyi/bio 3.5.1
- version: 3.22.3
biocontainers/bioconductor-edger v3.14.0dfsg-1-deb_cv1
- version: 3.14.0
chgyi/metaware_rna_denovo latest
- version: 3.24.3
mirekphd/ml-cpu-r35-nx devel_fdbf539
- version: 3.22.3
dhspence/docker-manta 1.5.0
- version: 3.22.3
dhspence/docker-hiccompare latest
- version: 3.28.1
atttilacs/dsp_geomxtools latest
- version: 3.36.0
atttilacs/seurat_big latest
- version: 3.36.0
mirekphd/ml-cpu-r35-rdp 20180918
- version: 3.22.3
jafoltz/scclassify latest
- version: 3.36.0
crukmi/mesa main
- version: 3.39.6
testalabgh/downstream signac-1.4.0
- version: 3.36.0
atttilacs/dsp_giotto latest
- version: 3.36.0
mlepetit/ranalysis 3.3.4
- version: 3.34.1
scgfacility/rstudio-course22 v0.11
image used to run the course 2022
- version: 3.40.0
koki/tensor-project-parasite 20211013
- version: 3.34.1
gesiscss/binder-ngs-2ddocs-2d2020-2dggg-2d298-2dfirst-2dday-2drnaseq-c342e4 dca58a4e2661655c1469b51f54f6baafdd836726
- version: 3.28.0
tercen/flowsom_operator 1.6.0
- version: 3.38.0
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520
- version: 3.28.0
dhspence/docker-vep 93
- version: 3.22.3
mirekphd/ml-cpu-r35-guac devel_6f33d1e
- version: 3.22.2
qdidiscoveryservices/bam_to_10x_counts_pandoc latest
- version: 3.36.0
doejgi/trinityrnaseq-wdl 2.11.0b
- version: 3.40.0, 3.28.1
chriswyatt/perl_r_e1071 latest
- version: 3.36.0
tercen/debarcoding_cytof_operator 0.3.0
- version: 3.38.4
koki/tensor-projects-machima 20220827
- version: 3.38.4
mirekphd/ml-gpu-r35-cuda90 devel_00b4e38
- version: 3.22.2
qdidiscoveryservices/batch_correction latest
- version: 3.30.3
crukmi/mesa_dependencies latest
- version: 3.40.2
trust1/rbox v1
Methylation array work toolbox
- version: 3.32.1
koki/urchin_workflow_seurat 20230616
- version: 3.40.2
koki/tensor-projects-parasite 20220819
- version: 3.38.4
mirekphd/ml-cpu-r36-rs 20200131
- version: 3.28.0
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157
- version: 3.22.2
qdidiscoveryservices/glimma 4.2.0
- version: 3.38.0
mattjmeier/r-odaf-hc-prod latest
- version: 3.40.0
recetox/xmsanalyzer 2.0.6.1-recetox1
- version: 3.30.3
koki/velocytor 20221015
- version: 3.38.4
luisas/rdeanalysis latest
- version: 3.28.1
bjornson/st_viewer v1
- version: 3.20.9
porchard/decontx 20230104
- version: 3.40.1
tercen/diffcyt_operator 0.4.2
- version: 3.38.0
tercen/compensate_cytof_operator 0.0.7
- version: 3.38.4
tercen/automated_gating_operator 1.0.0
- version: 3.38.4
mlepetit/rnormalisation 1.0
- version: 3.34.1
koki/bindsc 20220609
- version: 3.38.1
luisas/rde latest
- version: 3.28.1
sheddn/bioinformatics-tools latest
- version: 3.36.0
atttilacs/omardspcode latest
- version: 3.36.0
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5
- version: 3.42.4
qdidiscoveryservices/flowr 1.0
- version: 3.38.1
koki/urchin_workflow_r 20220531
- version: 3.38.1
luisas/r_sc latest
- version: 3.28.1
shl198/sc_ppl 202306
- version: 3.42.2
prismcmap/batch-correct-module v0.0.1
- version: 3.32.1
yiluxiangbei/pumpkin-genomealign-notebook 1.0
- version: 3.36.0
gongx030/ensemblemerge 2.1.24
Docker image for running ensemblemerge package.
- version: 3.40.0
yiluxiangbei/pumpkin-gene-genomealign 20220216
- version: 3.36.0
gnwanne/decontx latest
- version: 3.40.1
entsupml/r-with-libraries latest
- version: 3.40.2
qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest
- version: 3.28.1
tercen/flowsom_mst_operator latest
- version: 3.38.0
chgyi/trinity 2.8.4
- version: 3.20.8
qdidiscoveryservices/sc_pip_r_and_py latest
- version: 3.32.0
prismcmap/biomarker-module 26be7aa8ab48
- version: 3.32.1
tercen/t_test_operator 1.1.3
- version: 3.38.0
tercen/compare_means_operator 0.1.9
- version: 3.38.0