Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : caTools

Explore the latest package usage data for caTools in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 614
Total downloads: 78,812,590

More details on packages.ecosyste.ms - JSON

broadinstitute/genomes-in-the-cloud 2.4.0-1501007820

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

  • version: 1.17.1
Latest release: over 7 years ago - 40,948,348 downloads - 951 dependencies
broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

  • version: 1.18.2
Latest release: 12 months ago - 31,988,536 downloads - 912 dependencies
coala/base pre

A simple docker image featuring coala and it's dependencies.

  • version: 1.17.1
Latest release: over 7 years ago - 1,940,485 downloads - 1,827 dependencies
broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

  • version: 1.17.1
Latest release: over 6 years ago - 1,387,112 downloads - 498 dependencies
nfcore/rnaseq dev

Docker Image for nf-core/rnaseq project.

  • version: 1.18.0
Latest release: about 4 years ago - 659,186 downloads - 208 dependencies
veupathdb/rserve 7

  • version: 1.18.2
Latest release: almost 1 year ago - 624,940 downloads - 550 dependencies
broadinstitute/viral-core latest

  • version: 1.18.0
Latest release: over 4 years ago - 151,955 downloads - 419 dependencies
dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

  • version: 1.17.1
Latest release: almost 8 years ago - 115,438 downloads - 884 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 1.18.2
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
rocker/ropensci latest

  • version: 1.17.1
Latest release: over 6 years ago - 88,618 downloads - 1,589 dependencies
broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.18.2
Latest release: 11 months ago - 86,066 downloads - 912 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 1.18.2
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
nfcore/smrnaseq dev

A Docker container for the nf-core/smrnaseq pipeline.

  • version: 1.18.2
Latest release: over 3 years ago - 38,754 downloads - 320 dependencies
broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 1.17.1.2
Latest release: over 4 years ago - 24,573 downloads - 417 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.18.2
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.18.2
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.18.2
Latest release: over 2 years ago - 13,673 downloads - 11,684 dependencies
ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-18

  • version: 1.18.0
Latest release: over 1 year ago - 13,462 downloads - 747 dependencies
vanallenlab/sv-pipeline filter_gt_029fa3b

  • version: 1.18.2
Latest release: over 1 year ago - 22,757 downloads - 1,231 dependencies
rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

  • version: 1.17.1.3
Latest release: almost 5 years ago - 12,227 downloads - 534 dependencies
biocontainers/murasaki v1.68.6-8b1-deb_cv1

  • version: 1.17.1.1
Latest release: about 5 years ago - 7,975 downloads - 960 dependencies
biocontainers/murasaki-mpi v1.68.6-8b1-deb_cv1

  • version: 1.17.1.1
Latest release: about 5 years ago - 7,579 downloads - 960 dependencies
biocontainers/murasaki-common v1.68.6-8-deb_cv1

  • version: 1.17.1.1
Latest release: about 5 years ago - 7,560 downloads - 954 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.18.2
Latest release: over 2 years ago - 6,685 downloads - 12,259 dependencies
broadinstitute/viral-assemble latest

  • version: 1.18.0
Latest release: over 4 years ago - 4,464 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: 1.18.0
Latest release: over 4 years ago - 4,426 downloads - 431 dependencies
kbase/kbase sdkbase.latest

  • version: 1.17.1
Latest release: over 6 years ago - 4,258 downloads - 2,934 dependencies
rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

  • version: 1.17.1.2
Latest release: almost 5 years ago - 3,524 downloads - 843 dependencies
ocdr/dkube-datascience-rs-tf-cpu v2.0.0-tiji-test

  • version: 1.18.0
Latest release: over 2 years ago - 3,001 downloads - 722 dependencies
ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.9-18

  • version: 1.18.0
Latest release: over 1 year ago - 3,150 downloads - 747 dependencies
patroonorg/patroondeps latest

  • version: 1.18.2
Latest release: over 1 year ago - 2,754 downloads - 1,677 dependencies
ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-18

  • version: 1.18.0
Latest release: over 1 year ago - 2,777 downloads - 841 dependencies
rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

  • version: 1.17.1.2
Latest release: almost 5 years ago - 2,657 downloads - 591 dependencies
nfcore/bcellmagic dev

A preliminary container for the bcellmagic pipeline

  • version: 1.17.1.4
Latest release: over 3 years ago - 2,594 downloads - 298 dependencies
rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

  • version: 1.17.1.3
Latest release: almost 5 years ago - 1,775 downloads - 581 dependencies
nfcore/smartseq2 dev

A docker container for the nf-core/smartseq2 pipeline.

  • version: 1.18.2
Latest release: over 3 years ago - 1,669 downloads - 257 dependencies
kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

  • version: 1.17.1
Latest release: almost 7 years ago - 1,055 downloads - 1,383 dependencies
kbase/metrics latest

  • version: 1.17.1.2
Latest release: over 3 years ago - 1,027 downloads - 973 dependencies
ocdr/dkube-datascience-rs-tf-gpu v2.0.0-tiji-test

  • version: 1.18.0
Latest release: over 2 years ago - 1,025 downloads - 1,011 dependencies
kbase/errorlogging develop

  • version: 1.17.1.2
Latest release: almost 4 years ago - 948 downloads - 973 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.18.2
Latest release: about 2 years ago - 1,202 downloads - 654 dependencies
intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

  • version: 1.17.1.2
Latest release: over 4 years ago - 38,602 downloads - 842 dependencies
intelliseqngs/task_bam-bsqr 1.2.2

  • version: 1.18.2
Latest release: almost 2 years ago - 30,911 downloads - 1,038 dependencies
intelliseqngs/task_bam-filter-mismatch 1.4.1

  • version: 1.18.2
Latest release: almost 2 years ago - 21,820 downloads - 1,138 dependencies
intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

  • version: 1.18.2
Latest release: almost 3 years ago - 12,626 downloads - 948 dependencies
intelliseqngs/gatk-4.1.7.0 1.0.4

  • version: 1.17.1.2
Latest release: over 4 years ago - 10,089 downloads - 1,006 dependencies
intelliseqngs/task_bam-metrics 1.2.8

  • version: 1.17.1.2
Latest release: about 4 years ago - 7,556 downloads - 1,007 dependencies
nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 1.18.2
Latest release: over 3 years ago - 7,707 downloads - 423 dependencies
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

  • version: 1.18.2
Latest release: almost 2 years ago - 5,097 downloads - 1,140 dependencies
nfcore/proteomicslfq dev

A Docker Container for label free quantification for proteomics data.

  • version: 1.18.2
Latest release: over 2 years ago - 5,384 downloads - 1,124 dependencies
nfcore/diaproteomics dev

A Docker container for nf-core/diaproteomics

  • version: 1.18.2
Latest release: over 3 years ago - 5,499 downloads - 488 dependencies
intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

  • version: 1.17.1.2
Latest release: over 4 years ago - 4,290 downloads - 842 dependencies
intelliseqngs/gatk-4.1.6.0 2.0.2

  • version: 1.17.1.2
Latest release: over 4 years ago - 3,337 downloads - 842 dependencies
intelliseqngs/task_mt-varcall-mutect2 1.1.2

  • version: 1.18.2
Latest release: almost 2 years ago - 2,784 downloads - 1,038 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

  • version: 1.18.2
Latest release: almost 2 years ago - 2,314 downloads - 1,040 dependencies
intelliseqngs/gatk-4.2.0.0 1.0.0

  • version: 1.18.1
Latest release: over 3 years ago - 2,311 downloads - 957 dependencies
intelliseqngs/task_vcf-concat 1.0.4

  • version: 1.18.2
Latest release: over 1 year ago - 2,566 downloads - 1,043 dependencies
intelliseqngs/task_vcf-anno-cosmic 2.0.0

  • version: 1.18.2
Latest release: about 1 year ago - 2,498 downloads - 346 dependencies
intelliseqngs/task_mt-realign 1.1.2

  • version: 1.18.2
Latest release: almost 2 years ago - 2,028 downloads - 1,038 dependencies
intelliseqngs/task_bam-gatk-m2 1.1.2

  • version: 1.18.2
Latest release: almost 2 years ago - 1,949 downloads - 1,038 dependencies
intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

  • version: 1.18.2
Latest release: almost 2 years ago - 1,947 downloads - 1,038 dependencies
intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

  • version: 1.18.1
Latest release: about 3 years ago - 1,698 downloads - 957 dependencies
intelliseqngs/task_vcf-prepare 1.0.3

  • version: 1.18.2
Latest release: almost 2 years ago - 914 downloads - 1,038 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.17.1.1
Latest release: almost 6 years ago - 762 downloads - 9,716 dependencies
lucifer001/custom-rs-tf-multiuser gpu

  • version: 1.18.0
Latest release: almost 4 years ago - 949 downloads - 807 dependencies
ocdr/ds-apps test2

  • version: 1.18.2
Latest release: 12 months ago - 3,555 downloads - 3,778 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 1.17.1.1
Latest release: about 6 years ago - 1,158 downloads - 616 dependencies
tercen/runtime-r35 3.5.3-7

  • version: 1.17.1.2
Latest release: over 2 years ago - 700 downloads - 563 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 1.17.1.1
Latest release: almost 6 years ago - 1,141 downloads - 413 dependencies
intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

  • version: 1.17.1.2
Latest release: over 4 years ago - 640 downloads - 842 dependencies
afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

  • version: 1.18.2
Latest release: over 2 years ago - 635 downloads - 1,650 dependencies
intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

  • version: 1.18.2
Latest release: almost 3 years ago - 614 downloads - 946 dependencies
kbase/kbase_base latest

KBase Base Image containing Core services and runtime

  • version: 1.17.1
Latest release: about 8 years ago - 510 downloads - 3,106 dependencies
kbase/sdkbase latest

  • version: 1.17.1
Latest release: almost 8 years ago - 476 downloads - 2,934 dependencies
dhspence/docker-sicer latest

  • version: 1.17.1
Latest release: almost 6 years ago - 765 downloads - 1,147 dependencies
tercen/operator_base 1.0.5

  • version: 1.17.1
Latest release: about 6 years ago - 393 downloads - 699 dependencies
recetox/aplcms latest

  • version: 1.18.0
Latest release: over 3 years ago - 386 downloads - 458 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.18.2
Latest release: about 1 year ago - 2,811 downloads - 1,464 dependencies
nuest/ten-simple-rules-dockerfiles latest

  • version: 1.18.0
Latest release: about 4 years ago - 361 downloads - 752 dependencies
intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

  • version: 1.18.2
Latest release: almost 3 years ago - 362 downloads - 946 dependencies
intelliseqngs/task_vcf-concat-beagle 1.1.3

  • version: 1.18.2
Latest release: over 1 year ago - 364 downloads - 1,041 dependencies
intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

  • version: 1.18.2
Latest release: almost 2 years ago - 312 downloads - 1,038 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 1.17.1
Latest release: over 4 years ago - 312 downloads - 1,305 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

  • version: 1.18.2
Latest release: almost 2 years ago - 308 downloads - 1,040 dependencies
dhspence/docker-basestation latest

  • version: 1.17.1
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

  • version: 1.18.2
Latest release: almost 2 years ago - 304 downloads - 1,142 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 1.18.0
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
ocdr/dkube-datascience-rs-sk-cpu test-py

  • version: 1.17.1.3
Latest release: about 4 years ago - 299 downloads - 714 dependencies
nuest/rockerverse-paper latest

  • version: 1.17.1.2
Latest release: about 4 years ago - 286 downloads - 1,133 dependencies
rapporteket/rap-dev-data nodata

Tailor-made

  • version: 1.18.0
Latest release: over 3 years ago - 281 downloads - 1,372 dependencies
mirekphd/ml-cpu-r35-jnb devel_2b2752c

  • version: 1.17.1
Latest release: over 6 years ago - 271 downloads - 9,222 dependencies
rapporteket/rap-dev latest

  • version: 1.18.0
Latest release: about 3 years ago - 257 downloads - 1,362 dependencies
veitveit/polystest release-1.3.4

  • version: 1.18.2
Latest release: over 1 year ago - 245 downloads - 838 dependencies
nuest/rocker-lightgbm latest

A rocker/verse images with Microsoft's LightGBM

  • version: 1.17.1.2
Latest release: over 5 years ago - 252 downloads - 799 dependencies